CB292825

Overview
NameCB292825
Unique NameCB292825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 63/132 (47.73%), Postives = 76/132 (57.58%), Query Frame = 2
Query:   44 TNWALVSMNHDTQSCMDPNVMEAK---------------VVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREV--VPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 388
            TNW LV+  H TQ CMDPNV+E                 V++S+ GHDGPFGA   KR+  I   +++ GMK LDMN AE  +V  +     V  M   GMEVAE+DG  RMGPTFGAM +SG  AA   LK
Sbjct:  191 TNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILK 322          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.953e-17
Identity = 51/117 (43.59%), Postives = 66/117 (56.41%), Query Frame = 2
Query:   47 NWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 397
            NW  V M   T   +DP  +EAK V+ S GH    GA   + L   G+IE++PG  A+     E   V  T+EV PG+ +TGM    + GAPRMGP FG M +SG+KAA   L+ LG
Sbjct:  142 NWTPVKM---TGLHVDPLTVEAKYVIDSTGH----GAQVTQFLLKRGLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 48/117 (41.03%), Postives = 71/117 (60.68%), Query Frame = 2
Query:   47 NWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 397
            NW+ V       +C+DP  + A+ VV + GHD    A   ++L   GM+E    +  + +  +ED +V  T EV PG+++ G+ VAE+ G PRMGPTFGAM++SG+KAA L  + LG
Sbjct:  146 NWSPVQGLPRQITCVDPVGLRAEYVVDATGHD----AVVTRKLAERGMVE-ASKLGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 257          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 47/102 (46.08%), Postives = 60/102 (58.82%), Query Frame = 2
Query:   89 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 394
            +DP  +EAK V+ S GH        VKR    G+++E+PG  A+     E   V+ TREV PG+ +TGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct:  153 VDPLTIEAKYVIDSTGHGAQVAQFLVKR----GLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 52/116 (44.83%), Postives = 64/116 (55.17%), Query Frame = 2
Query:   47 NWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 394
            NW  V M   T   +DP  +EAK V+ S GH    GA   + L   G+IE +PG  A+     E   V  TREV PG+ +TGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct:  142 NWTPVLM---TGLHVDPLTVEAKYVIDSTGH----GAQVAQFLLKRGLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.793e-16
Identity = 51/118 (43.22%), Postives = 66/118 (55.93%), Query Frame = 2
Query:   47 NWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 400
            NW  V M   T   +DP  +EAK VV S GH    GA   + L   G+I+ +PG   +     E+  V  TREV PG+  TGM    + GAPRMGP FG M++SG+KAA   L+ LG+
Sbjct:  141 NWTPVMM---TGLHVDPLTVEAKFVVDSTGH----GAQISQHLLKRGLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGPIFGGMLLSGRKAALEILQKLGK 251          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 49/141 (34.75%), Postives = 73/141 (51.77%), Query Frame = 2
Query:   47 NWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 400
            NW  V       +C+DP  +E+ +VV S GHD          G   A G++     + GM             + PG  ++ ++ +ED +V  T  V PG++ TGM VA ++G PRMGPTFGAM++SG++ A   L  LG+
Sbjct:  152 NWTPVHALPRELTCVDPVAVESDLVVDSTGHDAVVISKLSERGVLNAPGIEHANEHNTGMDNTADDEYGAPGHDSPGHDSMWVSRSEDQVVEHTGVVHPGVVATGMAVATVEGLPRMGPTFGAMLLSGKRGAQACLNELGR 292          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_PYRAR (Putative thiazole biosynthetic enzyme OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1498 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 39/104 (37.50%), Postives = 61/104 (58.65%), Query Frame = 2
Query:   89 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 400
            +DP    AK V+ + GHD    +   +++  +G+  ++PG K+     +E  +V  T +V PG+ +TGM VA + G PRMGP FG MM+SG+K A +  K L +
Sbjct:  153 VDPLYTMAKAVIDATGHDAEVISVAARKVPELGI--QLPGEKSAWSEVSEKLVVEYTGKVAPGLYVTGMAVAAVHGLPRMGPIFGGMMLSGKKIAEIVAKDLAE 254          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_SULTO (Putative thiazole biosynthetic enzyme OS=Sulfolobus tokodaii GN=ST0361 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = 2
Query:   89 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 394
            +DP  + AK VV + GHD    +   +++  + ++  +PG K+    +AE+  V  T  V PG+   GM V E+ G PRMGP FGAM++SG++ A + +K L
Sbjct:  164 VDPLFISAKAVVDATGHDAEVISVAARKIPELNIV--IPGEKSAYSETAEELTVENTGMVAPGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKRVAEIIIKDL 263          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_SULAC (Putative thiazole biosynthetic enzyme OS=Sulfolobus acidocaldarius GN=Saci_0854 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 2
Query:   89 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 394
            +DP  + AK VV + GHD    A   +++  +G++  +PG ++     AE   V  T  V PG+ + GM V E+ G PRMGP FG+M++SG+K A   +K L
Sbjct:  163 VDPVFISAKAVVDATGHDAEVVAVASRKIPELGIV--IPGERSAYSEMAEKLTVEQTGVVAPGLYVAGMSVTEVRGLPRMGPIFGSMVLSGKKVAEDIIKDL 262          
The following BLAST results are available for this feature:
BLAST of CB292825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
THI4_YEAST1.496e-2347.73Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_PYRFU7.953e-1743.59Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_AERPE1.357e-1641.03Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_PYRHO1.772e-1646.08Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB3.022e-1644.83Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRKO8.793e-1643.22Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_HALWD5.699e-1534.75Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_PYRAR7.444e-1537.50Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_SULTO2.829e-1437.25Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULAC3.694e-1438.24Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ae01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ae01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292825 ID=CB292825; Name=CB292825; organism=Citrus sinensis; type=EST; length=705bp
GCACCTTGTGATAGTCAAAGGCGGCAGAGTTGGTGGTGTGGTGACCAACT
GGGCGTTGGTGTCAATGAATCACGATACACAGTCTTGCATGGATCCCAAT
GTAATGGAAGCGAAGGTGGTTGTGAGCTCTTGTGGCCATGATGGGCCTTT
TGGGGCCACTGGAGTAAAGAGGTTGAAGAGTATCGGAATGATTGAGGAAG
TGCCTGGAATGAAGGCACTGGACATGAACTCTGCAGAAGATGCTATTGTG
AGGCTGACCAGGGAGGTTGTGCCTGGTATGATAATTACCGGCATGGAAGT
TGCCGAGATTGATGGTGCTCCTCGAATGGGGCCAACATTTGGAGCAATGA
TGATATCGGGGCAGAAGGCTGCGCATTTGGCGTTGAAGTCACTGGGCCAG
CCGAATGCATTAGACGGTACATATGTGGGAGGCGTTCACCCTGAGCTGAT
CTTAGCTGCAGCTGATTCTGCTGAGACTGCTGATGCTTAATTTGGTAATA
ACAGGCATCATCACTCATCAGCTGTGTGCATGCAAATAAACTCTGGCAAA
AAAGTAGTTGTATTTAGGTGGTTGTGATGGATGGTTGATGCGAATAATGA
GATAATGTTGTGAGGTTTTGTGAATAAAGTGTTTGTTTCCGGTCCATCAT
GGAACCTTTAATTTTAATTTCTTTCTCCTCTTGTAAGAAACCGTTGTGAG
TTTTT
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