CB292825

Overview
NameCB292825
Unique NameCB292825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_METS5 (Putative thiazole biosynthetic enzyme OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_2221 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 40/102 (39.22%), Postives = 59/102 (57.84%), Query Frame = 2
Query:   89 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 394
            +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE   V  + EV PG+   GM V EI   PRMGP FGAM++SG+K A   +K+L
Sbjct:  159 VDPLFISAKAVVDATGHDAEVISVASRKIPELGIV--IPGEKSAYSEIAEQLTVEQSGEVAPGLYAAGMAVTEIKAIPRMGPIFGAMLLSGKKVAEDIIKNL 258          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_NATPD (Putative thiazole biosynthetic enzyme OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=NP5174A PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 49/140 (35.00%), Postives = 71/140 (50.71%), Query Frame = 2
Query:   47 NWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 397
            NW  V       +C+DP  +EA +V+ + GHD          G   A G++     + GM +           + PG  ++ +  +EDA+V  T     G+I+TGM  A   G PRMGPTFGAM++SG++AA  AL  LG
Sbjct:  153 NWTPVHALPREITCVDPIAVEADLVIDATGHDAVAVSKLQERGVLNAPGIEHADEHNTGMDQTGDDSYGAPGHDSPGHDSMWVGQSEDAVVEHTGLAHEGLIVTGMATATTYGLPRMGPTFGAMLLSGKRAAQAALDELG 292          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_HALMA (Putative thiazole biosynthetic enzyme OS=Haloarcula marismortui GN=rrnAC1782 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 47/140 (33.57%), Postives = 70/140 (50.00%), Query Frame = 2
Query:   47 NWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIE------------------------EVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 394
            NW  V       +C+DP  +EA +V+ + GHD    A  VK+L   G++                         + PG  ++ +  +EDA+V  T     G+++TGM  A   G PRMGPTFGAM++SG++AA +AL  L
Sbjct:  156 NWTPVHALPREITCVDPIAVEADLVIDATGHD----AMAVKKLDERGVLNAPGLEDEASGMDQTDDDTYGAPGHDSPGHDSMWVGESEDAVVEHTGLAHDGLVVTGMATATTYGLPRMGPTFGAMLVSGKRAAQVALDEL 291          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_METTP (Putative thiazole biosynthetic enzyme OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1121 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 2
Query:   89 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSI-----GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 400
            +DP  + A+VV+   GHD        K++        G+I E P   AL     E  +V  TREV PG+I+ GM    +   PRMGP FG M++SG+KAA +AL+ L Q
Sbjct:  155 VDPLAIRARVVIDGTGHDAAVCRVVQKKIPGAIVGESGVIGEKPMWAAL----GEKIVVDATREVYPGLIVAGMAATTVAAGPRMGPIFGGMLLSGEKAASIALEKLAQ 259          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_METVS (Putative thiazole biosynthetic enzyme OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0663 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 2
Query:   89 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 400
            +DP  + AK V+ S GHD    +T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ + GM         RMG  FG M +SG+K A L L+ L +
Sbjct:  160 VDPITISAKYVIDSTGHDASVVSTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLFVCGMTANAYHAGYRMGAIFGGMYLSGKKCAELILEKLNK 261          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_SULSO (Putative thiazole biosynthetic enzyme OS=Sulfolobus solfataricus GN=SSO0436 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 2
Query:   89 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 394
            +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+  TGM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  161 VDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYATGMAVTEVKGLPRMGPIFGAMVLSGKAVAGEITKDL 260          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_PYRIL (Putative thiazole biosynthetic enzyme OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=Pisl_1998 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 2
Query:   50 WALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 394
            W  + M+    S +DP   +AK V+ + GHD    +   +++  +G+  EV G K+     +E  +V  T  V PG+ + GM V  + G PRMGP FG M++SG++AA +  K L
Sbjct:  143 WTPIQMSG---SHVDPLYTQAKAVLDATGHDAEVISIAARKVPELGI--EVRGEKSAWAEVSEKLVVEHTGRVAPGLYVAGMAVCTVHGLPRMGPIFGGMLLSGRRAAEIIHKDL 252          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_METMP (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis GN=MMP1352 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 2
Query:   89 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 394
            +DP  + AK V+ S GHD     T  ++ K +G+  EVPG K++  +  E+++ R TREV PG+ + GM         RMG  FG M +SG+K A L L+ L
Sbjct:  160 IDPITISAKYVIDSTGHDASVINTLARKNKDLGI--EVPGEKSMWADKGENSLTRNTREVFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAELILEKL 259          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_SULIY (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=YG5714_1786 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = 2
Query:   89 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 394
            +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  161 VDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CB292825 vs. ExPASy Swiss-Prot
Match: THI4_SULIM (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=M1425_1670 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = 2
Query:   89 MDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIITGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 394
            +DP  + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  161 VDPIFISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
The following BLAST results are available for this feature:
BLAST of CB292825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
THI4_METS56.302e-1439.22Putative thiazole biosynthetic enzyme OS=Metallosp... [more]
THI4_NATPD8.230e-1435.00Putative thiazole biosynthetic enzyme OS=Natronomo... [more]
THI4_HALMA8.230e-1433.57Putative thiazole biosynthetic enzyme OS=Haloarcul... [more]
THI4_METTP1.833e-1339.45Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_METVS3.127e-1337.50Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_SULSO6.967e-1338.24Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_PYRIL9.099e-1334.78Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_METMP9.099e-1339.22Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_SULIY1.552e-1237.25Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_SULIM1.552e-1237.25Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ae01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ae01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292825 ID=CB292825; Name=CB292825; organism=Citrus sinensis; type=EST; length=705bp
GCACCTTGTGATAGTCAAAGGCGGCAGAGTTGGTGGTGTGGTGACCAACT
GGGCGTTGGTGTCAATGAATCACGATACACAGTCTTGCATGGATCCCAAT
GTAATGGAAGCGAAGGTGGTTGTGAGCTCTTGTGGCCATGATGGGCCTTT
TGGGGCCACTGGAGTAAAGAGGTTGAAGAGTATCGGAATGATTGAGGAAG
TGCCTGGAATGAAGGCACTGGACATGAACTCTGCAGAAGATGCTATTGTG
AGGCTGACCAGGGAGGTTGTGCCTGGTATGATAATTACCGGCATGGAAGT
TGCCGAGATTGATGGTGCTCCTCGAATGGGGCCAACATTTGGAGCAATGA
TGATATCGGGGCAGAAGGCTGCGCATTTGGCGTTGAAGTCACTGGGCCAG
CCGAATGCATTAGACGGTACATATGTGGGAGGCGTTCACCCTGAGCTGAT
CTTAGCTGCAGCTGATTCTGCTGAGACTGCTGATGCTTAATTTGGTAATA
ACAGGCATCATCACTCATCAGCTGTGTGCATGCAAATAAACTCTGGCAAA
AAAGTAGTTGTATTTAGGTGGTTGTGATGGATGGTTGATGCGAATAATGA
GATAATGTTGTGAGGTTTTGTGAATAAAGTGTTTGTTTCCGGTCCATCAT
GGAACCTTTAATTTTAATTTCTTTCTCCTCTTGTAAGAAACCGTTGTGAG
TTTTT
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