CB292832

Overview
NameCB292832
Unique NameCB292832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: DBP2_CANAL (ATP-dependent RNA helicase DBP2 OS=Candida albicans GN=DBP2 PE=3 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.657e-43
Identity = 89/151 (58.94%), Postives = 109/151 (72.19%), Query Frame = 3
Query:  345 DLCFFQVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            D    +V + GF  PTPIQ Q WP+AL  RD++ IA TGSGKTL Y LP  +H+      P+L    GP VLVL+PTRELA QIQ E  KFGKSSRI  TC+YGGAPKGPQ++D+ RGV+I +ATPGRL D+LE  + +L +V+YLVLDEA
Sbjct:  136 DYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINA---QPQLQYGDGPIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEA 283          
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: DBP2_COCIM (ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.010e-42
Identity = 85/143 (59.44%), Postives = 108/143 (75.52%), Query Frame = 3
Query:  360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLK-RCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            +V   GF+ PTPIQ+Q WP+AL  RD+V IA+TGSGKTL Y LP  +H+  +    P  GP VLVL+PTRELA QIQ E  KFGKSSRI  TC+YGG P+GPQ++D+ RGV++ +ATPGRL D+LE  + +L +V+YLVLDEA
Sbjct:  139 EVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLGPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEA 281          
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: DBP2_ASPCL (ATP-dependent RNA helicase dbp2 OS=Aspergillus clavatus GN=dbp2 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.319e-42
Identity = 86/143 (60.14%), Postives = 107/143 (74.83%), Query Frame = 3
Query:  360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLK-RCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            +V + GF  PT IQ+Q WP+AL  RD+V IA+TGSGKTL Y LP  +H+  +    P  GP VLVL+PTRELA QIQ E  KFGKSSRI  TC+YGG PKGPQ++D+ RGV++ +ATPGRL D+LE  R +L +V+YLVLDEA
Sbjct:  139 EVKSQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEA 281          
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: DBP2_PICST (ATP-dependent RNA helicase DBP2 OS=Pichia stipitis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.722e-42
Identity = 88/143 (61.54%), Postives = 106/143 (74.13%), Query Frame = 3
Query:  360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLK-RCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            +V   GF SPT IQ Q WP+AL  RD+V IA TGSGKTL Y LP  +H+  +    P  GP VLVL+PTRELA QIQ E  KFG SSRI  TC+YGGAPKG Q++D+ RGV+IV+ATPGRL D+LEM + +L +V+YLVLDEA
Sbjct:  111 EVKAQGFPSPTAIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPAIVHINAQPLLSPGDGPVVLVLAPTRELAVQIQQECSKFGSSSRIRNTCVYGGAPKGQQIRDLARGVEIVIATPGRLIDMLEMGKTNLKRVTYLVLDEA 253          
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: DBP2_ASPOR (ATP-dependent RNA helicase dbp2 OS=Aspergillus oryzae GN=dbp2 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.249e-42
Identity = 86/143 (60.14%), Postives = 106/143 (74.13%), Query Frame = 3
Query:  360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLK-RCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            +V   GF  PT IQ+Q WP+AL  RD+V IA+TGSGKTL Y LP  +H+  +    P  GP VLVL+PTRELA QIQ E  KFGKSSRI  TC+YGG PKGPQ++D+ RGV++ +ATPGRL D+LE  R +L +V+YLVLDEA
Sbjct:  144 EVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEA 286          
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: DBP2_AJECN (ATP-dependent RNA helicase DBP2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.938e-42
Identity = 86/143 (60.14%), Postives = 107/143 (74.83%), Query Frame = 3
Query:  360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLK-RCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            +V   GF+ PT IQAQ WP+AL  RD+V IA+TGSGKTL Y LP  +H+  +    P  GP VLVL+PTRELA QIQ E  KFGKSSRI  TC+YGG PKGPQ++D+ RGV++ +ATPGRL D+LE  + +L +V+YLVLDEA
Sbjct:  139 EVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDLTRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEA 281          
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: DBP2_SCHPO (ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe GN=dbp2 PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.837e-42
Identity = 83/143 (58.04%), Postives = 107/143 (74.83%), Query Frame = 3
Query:  360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLK-RCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            +V   GF +PTPIQ Q+WP+A+  RD+V I+ TGSGKTL Y LP  +H+  +    P  GP VLVL+PTRELA QIQ E  KFGKSSRI  TC+YGG P+GPQ++D+ RGV+I +ATPGRL D+L+  + +L +V+YLVLDEA
Sbjct:  136 EVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEA 278          
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: DBP2_EMENI (ATP-dependent RNA helicase dbp2 OS=Emericella nidulans GN=dbp2 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.837e-42
Identity = 85/143 (59.44%), Postives = 106/143 (74.13%), Query Frame = 3
Query:  360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLK-RCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            +V   GF  PT IQ+Q WP+AL  RD+V IA+TGSGKTL Y LP  +H+  +    P  GP VL+L+PTRELA QIQ E  KFGKSSRI  TC+YGG PKGPQ++D+ RGV++ +ATPGRL D+LE  R +L +V+YLVLDEA
Sbjct:  154 EVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEA 296          
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: DBP2_CHAGB (ATP-dependent RNA helicase DBP2 OS=Chaetomium globosum GN=DBP2 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.837e-42
Identity = 86/143 (60.14%), Postives = 106/143 (74.13%), Query Frame = 3
Query:  360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLK-RCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            +V   GF +PT IQ+Q WP+AL  RD+V IA+TGSGKTL Y LP  +H+  +    P  GP VLVL+PTRELA QIQ E  KFGKSSRI  TC+YGG PKGPQ +D+ RGV++ +ATPGRL D+LE  R +L +V+YLVLDEA
Sbjct:  150 EVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGPQTRDLSRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEA 292          
BLAST of CB292832 vs. ExPASy Swiss-Prot
Match: DBP2_NEOFI (ATP-dependent RNA helicase dbp2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.544e-42
Identity = 85/143 (59.44%), Postives = 106/143 (74.13%), Query Frame = 3
Query:  360 QVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLK-RCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 785
            +V   GF  PT IQ+Q WP+AL  RD+V IA+TGSGKTL Y LP  +H+  +    P  GP VL+L+PTRELA QIQ E  KFGKSSRI  TC+YGG PKGPQ++D+ RGV++ +ATPGRL D+LE  R +L +V+YLVLDEA
Sbjct:  133 EVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQTEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEA 275          
The following BLAST results are available for this feature:
BLAST of CB292832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_CANAL2.657e-4358.94ATP-dependent RNA helicase DBP2 OS=Candida albican... [more]
DBP2_COCIM1.010e-4259.44ATP-dependent RNA helicase DBP2 OS=Coccidioides im... [more]
DBP2_ASPCL1.319e-4260.14ATP-dependent RNA helicase dbp2 OS=Aspergillus cla... [more]
DBP2_PICST1.722e-4261.54ATP-dependent RNA helicase DBP2 OS=Pichia stipitis... [more]
DBP2_ASPOR2.249e-4260.14ATP-dependent RNA helicase dbp2 OS=Aspergillus ory... [more]
DBP2_AJECN2.938e-4260.14ATP-dependent RNA helicase DBP2 OS=Ajellomyces cap... [more]
DBP2_SCHPO3.837e-4258.04ATP-dependent RNA helicase dbp2 OS=Schizosaccharom... [more]
DBP2_EMENI3.837e-4259.44ATP-dependent RNA helicase dbp2 OS=Emericella nidu... [more]
DBP2_CHAGB3.837e-4260.14ATP-dependent RNA helicase DBP2 OS=Chaetomium glob... [more]
DBP2_NEOFI6.544e-4259.44ATP-dependent RNA helicase dbp2 OS=Neosartorya fis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ae05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ae05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292832 ID=CB292832; Name=CB292832; organism=Citrus sinensis; type=EST; length=787bp
GCTCTTTAAGTTGCTCCTCGGAGGAGCTAATGTCGTACGCTGCTTTGCCC
TCTATGGGGGGCCTTGCATATAATTTGGAGCGCCCTTATATGGTGGACCA
ATTAATGGAAGGGCTTTCCGAATCACCCAAGTTCATGGCTGGGACTGCAG
TTGGTGATGATTCAGTCTGCCACTCGGTCCAAACGGAAGAAGAGGTCTCC
TCCTGCTCCAGCTTGCATCAGCAAGCATTGGTCGGCTGCTTATGGAGGAT
GATGCTTCTTCTGGCATTAACCATTTCACTATTAATCCTAAAAGAAACCA
ATCAAAACTCTTGAGGCCAGTACCTCTGCTCACAGTGGTTATTGGATTTG
TGCTTTTTCCAGGTACACAATGCTGGATTCTCTTCCCCAACTCCAATTCA
GGCACAGTCATGGCCGATTGCTTTGCAAAGTAGAGATATTGTGGCCATTG
CAAAGACTGGATCTGGGAAAACATTGGGATATCTACTTCCAGGCTTTATT
CATCTTAAGCGCTGCCGTAATGACCCTCGATTGGGTCCAACGGTCTTGGT
ATTGTCACCGACAAGGGAGTTGGCAACTCAGATACAAGATGAAGCTGTGA
AATTTGGGAAGTCGTCAAGAATATCTTGCACTTGTTTATATGGAGGAGCA
CCAAAGGGTCCTCAGTTGAAAGATATTGACAGAGGAGTGGATATTGTGGT
TGCAACTCCTGGCCGATTAAATGATATTCTTGAGATGAGGAGAATCAGCC
TTAATCAAGTTTCTTACCTTGTACTGGATGAGGCTGA
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