CB292868

Overview
NameCB292868
Unique NameCB292868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_ECOHS (Cysteine desulfurase OS=Escherichia coli O9:H4 (strain HS) GN=iscS PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.838e-61
Identity = 110/198 (55.56%), Postives = 153/198 (77.27%), Query Frame = 2 
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMS 706
            P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIADL+GA P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TYL    +GI++L EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q++GK+P+D+ +    LMS
Sbjct:    4 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 201
[Close]
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_ECODH (Cysteine desulfurase OS=Escherichia coli (strain K12 / DH10B) GN=iscS PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.838e-61
Identity = 110/198 (55.56%), Postives = 153/198 (77.27%), Query Frame = 2 
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMS 706
            P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIADL+GA P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TYL    +GI++L EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q++GK+P+D+ +    LMS
Sbjct:    4 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 201
[Close]
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_ECOBW (Cysteine desulfurase OS=Escherichia coli (strain K12 / BW2952) GN=iscS PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.838e-61
Identity = 110/198 (55.56%), Postives = 153/198 (77.27%), Query Frame = 2 
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMS 706
            P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIADL+GA P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TYL    +GI++L EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q++GK+P+D+ +    LMS
Sbjct:    4 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 201
[Close]
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_ECO8A (Cysteine desulfurase OS=Escherichia coli O8 (strain IAI1) GN=iscS PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.838e-61
Identity = 110/198 (55.56%), Postives = 153/198 (77.27%), Query Frame = 2 
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMS 706
            P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIADL+GA P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TYL    +GI++L EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q++GK+P+D+ +    LMS
Sbjct:    4 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 201
[Close]
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_ECO81 (Cysteine desulfurase OS=Escherichia coli O81 (strain ED1a) GN=iscS PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.838e-61
Identity = 110/198 (55.56%), Postives = 153/198 (77.27%), Query Frame = 2 
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMS 706
            P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIADL+GA P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TYL    +GI++L EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q++GK+P+D+ +    LMS
Sbjct:    4 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 201
[Close]
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_ECO7I (Cysteine desulfurase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=iscS PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.838e-61
Identity = 110/198 (55.56%), Postives = 153/198 (77.27%), Query Frame = 2 
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMS 706
            P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIADL+GA P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TYL    +GI++L EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q++GK+P+D+ +    LMS
Sbjct:    4 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 201
[Close]
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_ECO5E (Cysteine desulfurase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=iscS PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.838e-61
Identity = 110/198 (55.56%), Postives = 153/198 (77.27%), Query Frame = 2 
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMS 706
            P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIADL+GA P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TYL    +GI++L EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q++GK+P+D+ +    LMS
Sbjct:    4 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 201
[Close]
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_ECO57 (Cysteine desulfurase OS=Escherichia coli O157:H7 GN=iscS PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.838e-61
Identity = 110/198 (55.56%), Postives = 153/198 (77.27%), Query Frame = 2 
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMS 706
            P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIADL+GA P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TYL    +GI++L EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q++GK+P+D+ +    LMS
Sbjct:    4 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 201
[Close]
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_ECO55 (Cysteine desulfurase OS=Escherichia coli (strain 55989 / EAEC) GN=iscS PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.838e-61
Identity = 110/198 (55.56%), Postives = 153/198 (77.27%), Query Frame = 2 
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMS 706
            P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIADL+GA P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TYL    +GI++L EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q++GK+P+D+ +    LMS
Sbjct:    4 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 201
[Close]
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_ECO45 (Cysteine desulfurase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=iscS PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.838e-61
Identity = 110/198 (55.56%), Postives = 153/198 (77.27%), Query Frame = 2 
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMS 706
            P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIADL+GA P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TYL    +GI++L EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q++GK+P+D+ +    LMS
Sbjct:    4 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 201
The following BLAST results are available for this feature:
BLAST of CB292868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 289
Match NameE-valueIdentityDescription
ISCS_ECOHS1.838e-6155.56Cysteine desulfurase OS=Escherichia coli O9:H4 (st... [more]
ISCS_ECODH1.838e-6155.56Cysteine desulfurase OS=Escherichia coli (strain K... [more]
ISCS_ECOBW1.838e-6155.56Cysteine desulfurase OS=Escherichia coli (strain K... [more]
ISCS_ECO8A1.838e-6155.56Cysteine desulfurase OS=Escherichia coli O8 (strai... [more]
ISCS_ECO811.838e-6155.56Cysteine desulfurase OS=Escherichia coli O81 (stra... [more]
ISCS_ECO7I1.838e-6155.56Cysteine desulfurase OS=Escherichia coli O7:K1 (st... [more]
ISCS_ECO5E1.838e-6155.56Cysteine desulfurase OS=Escherichia coli O157:H7 (... [more]
ISCS_ECO571.838e-6155.56Cysteine desulfurase OS=Escherichia coli O157:H7 G... [more]
ISCS_ECO551.838e-6155.56Cysteine desulfurase OS=Escherichia coli (strain 5... [more]
ISCS_ECO451.838e-6155.56Cysteine desulfurase OS=Escherichia coli O45:K1 (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_05ag02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ag02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292868 ID=CB292868; Name=CB292868; organism=Citrus sinensis; type=EST; length=711bp
GCACGATGCCGGCGTCCGCTCCCTTTCCAACGCCACAGCCGCCGCGGTTT
CTACGGCGTATGAACCTCAGGAGGACCAAAACGGAATCACCTTGAAAGGC
GTGAGAATCGCGGGCCGCCCTCTCTACCTCGATATGCAAGCAACCACTCC
AGTCGACCCACGTGTCCTCGATGCCATGCTCCCTTTCTATCTTTCTCGTT
ACGGTAACCCCCACTCCCGGACCCACCTCTTCGGGTGGGAATCCGAAGTC
GCCGTCGAAACCGCCCGCTCTCAAATCGCCGATCTTATCGGCGCTTCTCC
TAAAGAGATAATTTTCACTTCCGGCGCAACGGAATCGAATAATGTCTCCA
TCAAAGGAGTCATGCACTTTTACAAGGATAAAAAGCGCCACGTCATCACC
ACTCAGACCGAGCACAAGTGCGTTCTCGATTCGTGCCGGCATCTTCAGCA
GGAAGGTTTTGAAATTACTTATTTACCTGTTGGAGCTGATGGGATTGTTA
ATTTAGATGAATTGCGAGCTGCTATTAGGCCTGACACCGGCTTGATTTCT
GTTATGGCGGTTAACAACGAAATTGGCGTGATTCAGCCTATGGAAGAAAT
CGGGCAAATTTGTAAAGAATTTAAAATCCCGTTTCACACTGATGCTGCCC
AGGCGTTGGGGAAGATTCCGGTTGATGTCGAGAAATGGAATGCGAGTTTG
ATGTCGTTGAG
back to top