CB292868

Overview
NameCB292868
Unique NameCB292868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_SALHS (Cysteine desulfurase OS=Salmonella heidelberg (strain SL476) GN=iscS PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.135e-61
Identity = 109/198 (55.05%), Postives = 154/198 (77.78%), Query Frame = 2
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMS 706
            P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIA+L+GA P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TYL    +GI++L+EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q++GK+P+D+ +    LMS
Sbjct:    4 PIYLDYSATTPVDPRVAEKMMQFLTLDGTFGNPASRSHRFGWQAEEAVDIARNQIAELVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLNELEAAMRDDTILVSIMHVNNEIGVVQDIATIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 201          
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_SALG2 (Cysteine desulfurase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=iscS PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.135e-61
Identity = 109/198 (55.05%), Postives = 154/198 (77.78%), Query Frame = 2
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMS 706
            P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIA+L+GA P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TYL    +GI++L+EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q++GK+P+D+ +    LMS
Sbjct:    4 PIYLDYSATTPVDPRVAEKMMQFLTLDGTFGNPASRSHRFGWQAEEAVDIARNQIAELVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLNELEAAMRDDTILVSIMHVNNEIGVVQDIATIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 201          
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_SALEP (Cysteine desulfurase OS=Salmonella enteritidis PT4 (strain P125109) GN=iscS PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.135e-61
Identity = 109/198 (55.05%), Postives = 154/198 (77.78%), Query Frame = 2
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMS 706
            P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIA+L+GA P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TYL    +GI++L+EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q++GK+P+D+ +    LMS
Sbjct:    4 PIYLDYSATTPVDPRVAEKMMQFLTLDGTFGNPASRSHRFGWQAEEAVDIARNQIAELVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLNELEAAMRDDTILVSIMHVNNEIGVVQDIATIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 201          
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_SALDC (Cysteine desulfurase OS=Salmonella dublin (strain CT_02021853) GN=iscS PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.135e-61
Identity = 109/198 (55.05%), Postives = 154/198 (77.78%), Query Frame = 2
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMS 706
            P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIA+L+GA P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TYL    +GI++L+EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q++GK+P+D+ +    LMS
Sbjct:    4 PIYLDYSATTPVDPRVAEKMMQFLTLDGTFGNPASRSHRFGWQAEEAVDIARNQIAELVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLNELEAAMRDDTILVSIMHVNNEIGVVQDIATIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 201          
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_SALCH (Cysteine desulfurase OS=Salmonella choleraesuis GN=iscS PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.135e-61
Identity = 109/198 (55.05%), Postives = 154/198 (77.78%), Query Frame = 2
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMS 706
            P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIA+L+GA P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TYL    +GI++L+EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q++GK+P+D+ +    LMS
Sbjct:    4 PIYLDYSATTPVDPRVAEKMMQFLTLDGTFGNPASRSHRFGWQAEEAVDIARNQIAELVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLNELEAAMRDDTILVSIMHVNNEIGVVQDIATIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 201          
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_SALA4 (Cysteine desulfurase OS=Salmonella agona (strain SL483) GN=iscS PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.135e-61
Identity = 109/198 (55.05%), Postives = 154/198 (77.78%), Query Frame = 2
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMS 706
            P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIA+L+GA P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TYL    +GI++L+EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q++GK+P+D+ +    LMS
Sbjct:    4 PIYLDYSATTPVDPRVAEKMMQFLTLDGTFGNPASRSHRFGWQAEEAVDIARNQIAELVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLNELEAAMRDDTILVSIMHVNNEIGVVQDIATIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 201          
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_KLEP7 (Cysteine desulfurase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=iscS PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.135e-61
Identity = 109/198 (55.05%), Postives = 154/198 (77.78%), Query Frame = 2
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMS 706
            P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIA+L+GA P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TYL   ++GI++L EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q++GK+P+D+ +    LMS
Sbjct:    4 PIYLDYSATTPVDPRVAEKMMQFLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIAELVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQSNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIATIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 201          
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_ACTSZ (Cysteine desulfurase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=iscS PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.135e-61
Identity = 112/199 (56.28%), Postives = 152/199 (76.38%), Query Frame = 2
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMSL 709
            P+YLD  AT PVD RV + M+ +      +GNP SR+H FGW++E AV+ AR+QIADLIGA  +EI+FTSGATES+N++IKG  HFY+ K +H+IT +TEHK VLD+CR L++EGFE+TYL    DG+++LDE +AAIRPDT L S+M VNNEIGVIQ +  IG+IC+  KI FH DA Q++GKI +++ + +  L+S+
Sbjct:    4 PIYLDYAATCPVDERVAEKMMNYLTIDGVFGNPASRSHKFGWQAEEAVDIARNQIADLIGADSREIVFTSGATESDNLAIKGAAHFYQTKGKHIITCKTEHKAVLDTCRQLEREGFEVTYLSPKCDGLIDLDEFKAAIRPDTILASIMHVNNEIGVIQDIRAIGEICRAHKIIFHVDATQSVGKIAINLAELSVDLLSM 202          
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_SHESR (Cysteine desulfurase OS=Shewanella sp. (strain MR-7) GN=iscS PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.095e-61
Identity = 111/199 (55.78%), Postives = 151/199 (75.88%), Query Frame = 2
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYLSR--YGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMSL 709
            P+YLD  ATTPVDPRV + M  +      +GNP SR+H +GW++E AV+ ARSQ+ADLI A  +EI+FTSGATESNN++IKGV HFY  K +H+IT++TEHK VLD+CR L++EGFE+TYL   A+GI+ ++ L AA+R DT L+S+M VNNEIGVI  ++ IG++C+   I FH DAAQ+ GK+P+DV+     L+S+
Sbjct:    4 PIYLDYAATTPVDPRVAEKMFQYMTMDGIFGNPASRSHRYGWQAEEAVDVARSQVADLINADHREIVFTSGATESNNLAIKGVAHFYNKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLEPEANGIIPMERLEAAMRDDTILVSIMHVNNEIGVIHDVDAIGELCRSKGIIFHMDAAQSAGKLPIDVQTTKVDLISI 202          
BLAST of CB292868 vs. ExPASy Swiss-Prot
Match: ISCS_SHESA (Cysteine desulfurase OS=Shewanella sp. (strain ANA-3) GN=iscS PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.095e-61
Identity = 111/199 (55.78%), Postives = 151/199 (75.88%), Query Frame = 2
Query:  119 PLYLDMQATTPVDPRVLDAMLPFYLSR--YGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNASLMSL 709
            P+YLD  ATTPVDPRV + M  +      +GNP SR+H +GW++E AV+ ARSQ+ADLI A  +EI+FTSGATESNN++IKGV HFY  K +H+IT++TEHK VLD+CR L++EGFE+TYL   A+GI+ ++ L AA+R DT L+S+M VNNEIGVI  ++ IG++C+   I FH DAAQ+ GK+P+DV+     L+S+
Sbjct:    4 PIYLDYAATTPVDPRVAEKMFQYMTMDGIFGNPASRSHRYGWQAEEAVDVARSQVADLINADHREIVFTSGATESNNLAIKGVAHFYNKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLEPEANGIIPMERLEAAMRDDTILVSIMHVNNEIGVIHDVDAIGELCRSKGIIFHMDAAQSAGKLPIDVQTTKVDLISI 202          
The following BLAST results are available for this feature:
BLAST of CB292868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 289
Match NameE-valueIdentityDescription
ISCS_SALHS3.135e-6155.05Cysteine desulfurase OS=Salmonella heidelberg (str... [more]
ISCS_SALG23.135e-6155.05Cysteine desulfurase OS=Salmonella gallinarum (str... [more]
ISCS_SALEP3.135e-6155.05Cysteine desulfurase OS=Salmonella enteritidis PT4... [more]
ISCS_SALDC3.135e-6155.05Cysteine desulfurase OS=Salmonella dublin (strain ... [more]
ISCS_SALCH3.135e-6155.05Cysteine desulfurase OS=Salmonella choleraesuis GN... [more]
ISCS_SALA43.135e-6155.05Cysteine desulfurase OS=Salmonella agona (strain S... [more]
ISCS_KLEP73.135e-6155.05Cysteine desulfurase OS=Klebsiella pneumoniae subs... [more]
ISCS_ACTSZ3.135e-6156.28Cysteine desulfurase OS=Actinobacillus succinogene... [more]
ISCS_SHESR4.095e-6155.78Cysteine desulfurase OS=Shewanella sp. (strain MR-... [more]
ISCS_SHESA4.095e-6155.78Cysteine desulfurase OS=Shewanella sp. (strain ANA... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ag02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ag02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292868 ID=CB292868; Name=CB292868; organism=Citrus sinensis; type=EST; length=711bp
GCACGATGCCGGCGTCCGCTCCCTTTCCAACGCCACAGCCGCCGCGGTTT
CTACGGCGTATGAACCTCAGGAGGACCAAAACGGAATCACCTTGAAAGGC
GTGAGAATCGCGGGCCGCCCTCTCTACCTCGATATGCAAGCAACCACTCC
AGTCGACCCACGTGTCCTCGATGCCATGCTCCCTTTCTATCTTTCTCGTT
ACGGTAACCCCCACTCCCGGACCCACCTCTTCGGGTGGGAATCCGAAGTC
GCCGTCGAAACCGCCCGCTCTCAAATCGCCGATCTTATCGGCGCTTCTCC
TAAAGAGATAATTTTCACTTCCGGCGCAACGGAATCGAATAATGTCTCCA
TCAAAGGAGTCATGCACTTTTACAAGGATAAAAAGCGCCACGTCATCACC
ACTCAGACCGAGCACAAGTGCGTTCTCGATTCGTGCCGGCATCTTCAGCA
GGAAGGTTTTGAAATTACTTATTTACCTGTTGGAGCTGATGGGATTGTTA
ATTTAGATGAATTGCGAGCTGCTATTAGGCCTGACACCGGCTTGATTTCT
GTTATGGCGGTTAACAACGAAATTGGCGTGATTCAGCCTATGGAAGAAAT
CGGGCAAATTTGTAAAGAATTTAAAATCCCGTTTCACACTGATGCTGCCC
AGGCGTTGGGGAAGATTCCGGTTGATGTCGAGAAATGGAATGCGAGTTTG
ATGTCGTTGAG
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