CB293077

Overview
NameCB293077
Unique NameCB293077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: HINT1_PONAB (Histidine triad nucleotide-binding protein 1 OS=Pongo abelii GN=HINT1 PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 4.799e-30
Identity = 58/112 (51.79%), Postives = 85/112 (75.89%), Query Frame = 1
Query:   16 TIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL*GRQMNWPPG 351
            TIF KII K+IP+K+++EDD+ L+F D+ PQAPTH L+IPK +  ++ +S AE+ +  +LG L+   K  A   GL  G+R+V+N+G +GGQSV+H+H+H+L GRQM+WPPG
Sbjct:   17 TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH--ISQISVAEDDNESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 126          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: HINT1_HUMAN (Histidine triad nucleotide-binding protein 1 OS=Homo sapiens GN=HINT1 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 8.185e-30
Identity = 58/112 (51.79%), Postives = 84/112 (75.00%), Query Frame = 1
Query:   16 TIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL*GRQMNWPPG 351
            TIF KII K+IP+K+++EDD+ L+F D+ PQAPTH L+IPK +  ++ +S AE+    +LG L+   K  A   GL  G+R+V+N+G +GGQSV+H+H+H+L GRQM+WPPG
Sbjct:   17 TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH--ISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 126          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: HINT_CAEEL (Histidine triad nucleotide-binding protein 1 OS=Caenorhabditis elegans GN=hint-1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.823e-29
Identity = 57/112 (50.89%), Postives = 83/112 (74.11%), Query Frame = 1
Query:   16 TIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL*GRQMNWPPG 351
            T+F KII K+IP+K+++EDD+ L+F DV PQAP H L+IPK    +  L  A +    ++G+L+ TA  VAKQ G+ +G+R+V+N+G +G QSVFH+H+H+L GRQ+ WPPG
Sbjct:   21 TLFGKIIRKEIPAKIIFEDDEALAFHDVSPQAPIHFLVIPKRRIDM--LENAVDSDAALIGKLMVTASKVAKQLGMANGYRVVVNNGKDGAQSVFHLHLHVLGGRQLQWPPG 130          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: YHIT_SYNY3 (Uncharacterized HIT-like protein slr1234 OS=Synechocystis sp. (strain PCC 6803) GN=slr1234 PE=4 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.470e-27
Identity = 60/112 (53.57%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   16 TIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL*GRQMNWPPG 351
            TIF KII ++IP+ +VYEDD  L+F+DV PQAP H+L+IPK    L  LS A      +LG LL  AK VA   G+ D FR+VIN+G   GQ+VFH+H+H+L GR  +WPPG
Sbjct:    5 TIFSKIIRREIPAAIVYEDDLCLAFKDVNPQAPVHVLLIPK--KPLPQLSAATPEDHALLGHLLLKAKEVAADLGIGDQFRLVINNGAEVGQTVFHLHLHILGGRPFSWPPG 114          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: YHIT_AQUAE (Uncharacterized HIT-like protein aq_141 OS=Aquifex aeolicus GN=aq_141 PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.070e-25
Identity = 55/117 (47.01%), Postives = 78/117 (66.67%), Query Frame = 1
Query:   19 IFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQ------EGLEDGFRIVINDGPNGGQSVFHIHVHLL*GRQMNWPPG 351
            IF KI+  ++P+K VYEDDKVL+F D+ P AP HILIIPK +  + G+   E     ++G + Y A+ +A+       E L  G+R+V N G + GQSVFH+H+HL+ GR+M+WPPG
Sbjct:    7 IFCKIVRGEVPAKKVYEDDKVLAFHDINPVAPVHILIIPKKH--IMGIQTLEPEDECLVGHMFYVARKIAEDLGIAPDENLNKGYRLVFNVGKDAGQSVFHLHLHLIGGREMSWPPG 121          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: HINT_SHIFL (HIT-like protein hinT OS=Shigella flexneri GN=hinT PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.035e-24
Identity = 54/108 (50.00%), Postives = 78/108 (72.22%), Query Frame = 1
Query:   16 TIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLL*GRQM 336
            TIF KII ++IPS +VY+DD V +FRD+ PQAPTHILIIP +   +  ++     H + LGR++  A  +A+QEG+ EDG+R+++N   +GGQ V+HIH+HLL GR +
Sbjct:    5 TIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNIL--IPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: HINT_ECOLI (HIT-like protein hinT OS=Escherichia coli (strain K12) GN=hinT PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.035e-24
Identity = 54/108 (50.00%), Postives = 78/108 (72.22%), Query Frame = 1
Query:   16 TIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLL*GRQM 336
            TIF KII ++IPS +VY+DD V +FRD+ PQAPTHILIIP +   +  ++     H + LGR++  A  +A+QEG+ EDG+R+++N   +GGQ V+HIH+HLL GR +
Sbjct:    5 TIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNIL--IPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: HINT_ECO57 (HIT-like protein hinT OS=Escherichia coli O157:H7 GN=hinT PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.035e-24
Identity = 54/108 (50.00%), Postives = 78/108 (72.22%), Query Frame = 1
Query:   16 TIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLL*GRQM 336
            TIF KII ++IPS +VY+DD V +FRD+ PQAPTHILIIP +   +  ++     H + LGR++  A  +A+QEG+ EDG+R+++N   +GGQ V+HIH+HLL GR +
Sbjct:    5 TIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNIL--IPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: Y961_HAEIN (HIT-like protein HI0961 OS=Haemophilus influenzae GN=HI0961 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.282e-22
Identity = 52/108 (48.15%), Postives = 75/108 (69.44%), Query Frame = 1
Query:   16 TIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLL*GRQM 336
            TIF KII K+IP+ +VY+D+ V +FRD+ PQA THILIIP  N  +  ++   E+    LGRL   A  +AK+EG+ EDG+R+++N   +GGQ VFH+H+HL+ G  +
Sbjct:    5 TIFSKIIRKEIPANIVYQDELVTAFRDISPQAKTHILIIP--NKVIPTVNDVTEQDEVALGRLFSVAAKLAKEEGVAEDGYRLIVNCNKHGGQEVFHLHMHLVGGEPL 110          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: PKIA_DICDI (Protein pkiA OS=Dictyostelium discoideum GN=pkiA PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 5.318e-21
Identity = 51/114 (44.74%), Postives = 77/114 (67.54%), Query Frame = 1
Query:   16 TIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVN-DGLTGLSKAE-ERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL*GRQMNWPPG 351
            TIF KII+  IPSK  Y+D+  ++  D+ PQAP H+L+IPK+   GL+ ++  + E++ E +G ++     +A  +G  D +R+VIN+G  G QSV  +H+H+L GRQMNWPPG
Sbjct:   15 TIFAKIISGAIPSKKFYDDEYCIAIEDINPQAPVHLLVIPKLAVGGLSDVANVDLEKYKESMGHIMSKIHHIASLKGA-DSYRLVINEGVLGQQSVRWLHIHILGGRQMNWPPG 127          
The following BLAST results are available for this feature:
BLAST of CB293077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
HINT1_PONAB4.799e-3051.79Histidine triad nucleotide-binding protein 1 OS=Po... [more]
HINT1_HUMAN8.185e-3051.79Histidine triad nucleotide-binding protein 1 OS=Ho... [more]
HINT_CAEEL1.823e-2950.89Histidine triad nucleotide-binding protein 1 OS=Ca... [more]
YHIT_SYNY38.470e-2753.57Uncharacterized HIT-like protein slr1234 OS=Synech... [more]
YHIT_AQUAE6.070e-2547.01Uncharacterized HIT-like protein aq_141 OS=Aquifex... [more]
HINT_SHIFL1.035e-2450.00HIT-like protein hinT OS=Shigella flexneri GN=hinT... [more]
HINT_ECOLI1.035e-2450.00HIT-like protein hinT OS=Escherichia coli (strain ... [more]
HINT_ECO571.035e-2450.00HIT-like protein hinT OS=Escherichia coli O157:H7 ... [more]
Y961_HAEIN6.282e-2248.15HIT-like protein HI0961 OS=Haemophilus influenzae ... [more]
PKIA_DICDI5.318e-2144.74Protein pkiA OS=Dictyostelium discoideum GN=pkiA P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05cb06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05cb06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293077 ID=CB293077; Name=CB293077; organism=Citrus sinensis; type=EST; length=540bp
CCTTCTGATTCGCCCACCATATTTGACAAAATAATTAACAAAAAAATCCC
ATCTAAAGTTGTTTATGAGGATGATAAGGTCTTATCCTTTAGGGACGTAG
AGCCCCAAGCTCCTACACACATTCTAATTATTCCCAAAGTGAATGATGGC
TTGACTGGACTTTCAAAGGCTGAGGAAAGGCATTGCGAAATTCTTGGCCG
CCTTCTTTACACTGCTAAGCTTGTTGCTAAACAGGAAGGACTAGAAGACG
GCTTTAGGATTGTGATTAATGATGGGCCAAATGGAGGTCAATCAGTTTTT
CACATCCACGTCCACCTCCTATGAGGACGACAAATGAACTGGCCCCCGGG
CTAAGATGAAGTATTTTGGGTGCCAAATTCTCTTATGAAAAAATGATTAC
GCCCTTTGTACTTTAATATGCATCAAGCTTCAAATAACAAATTACTTGGT
GGTTGCTCTGAACCACATTATTTGATATGATGTGAAATGACATTGTGCTG
GAAGGAGAAAAAGACCTTCAATAATAAGGGTGTGGTTTGT
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