CB293077

Overview
NameCB293077
Unique NameCB293077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: HITA_NEIGO (Protein hitA OS=Neisseria gonorrhoeae GN=hitA PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 45/101 (44.55%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   19 IFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL 321
            IF KI  K+IP++ VYED +++ F+D+ P AP H+L+IPKV+     L+ A   H  +LG+++     +AK  GL DGF+ +IN G  GGQ VFH+H+H++
Sbjct:    5 IFCKIAAKEIPAQTVYEDGEMVCFKDINPAAPLHLLLIPKVH--FDSLAHAAPEHQPLLGKMMLKVPEIAKASGLTDGFKTLINTGKGGGQEVFHLHIHIM 103          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: YHIT_BUCBP (Uncharacterized HIT-like protein bbp_327 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=bbp_327 PE=4 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 43/108 (39.81%), Postives = 73/108 (67.59%), Query Frame = 1
Query:   19 IFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLE-DGFRIVINDGPNGGQSVFHIHVHLL*GRQMN 339
            IF KII   IPSK++Y+D ++ +F D+ P AP HIL++P  N  +  L++  E +  ILG +LY +  +AK+  ++ +G+R++IN   +G Q + H+H+HLL G+++N
Sbjct:    5 IFQKIIKGIIPSKIIYQDKEITAFHDINPIAPIHILVVP--NLLIKSLNEINENNKHILGNMLYISIKIAKKFKIDKNGYRLIINCNQHGRQEIQHLHLHLLGGKKLN 110          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: YHIT_BUCAI (Uncharacterized HIT-like protein BU357 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=BU357 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.601e-17
Identity = 42/108 (38.89%), Postives = 74/108 (68.52%), Query Frame = 1
Query:   16 TIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLL*GRQM 336
            +IF  II +KIP+ +VY+D K+ +F D++P+AP HILIIP  N  ++  +   +++  I+  + Y A  +AKQ+ + ++G+RI+IN    GGQ + ++H+HLL G+++
Sbjct:    5 SIFKNIIQRKIPANIVYQDKKITAFEDIKPKAPVHILIIP--NFFISSSNDINKKNKWIMSHMFYIAVKIAKQKKINQEGYRIIINCNEYGGQEINYLHMHLLGGKKL 110          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: Y664_CHLMU (Uncharacterized HIT-like protein TC_0664 OS=Chlamydia muridarum GN=TC_0664 PE=4 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.770e-16
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 1
Query:   16 TIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL*G 327
            TIF++II   +    V+ED+  +  +D  PQAP H+LIIPK +  +  L   +     +L       +L+A+  G+E+G+R+VIN+G  GGQSVFH+H+HLL G
Sbjct:   18 TIFERIIEGAVECDKVFEDENFIVIKDKFPQAPVHLLIIPKKH--IEKLQDMQSDDFSLLSEAGKIIQLMARDFGIENGYRVVINNGLEGGQSVFHLHIHLLGG 119          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: YHIT_CHLTR (Uncharacterized HIT-like protein CT_385 OS=Chlamydia trachomatis GN=CT_385 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.786e-16
Identity = 42/104 (40.38%), Postives = 65/104 (62.50%), Query Frame = 1
Query:   16 TIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL*G 327
            TIF++II   +    V+ED+  +  +D  PQAP H+LIIPK +  +  L   +     +L       +L+A+  G+E+G+R+V+N+G  GGQSVFH+H+HLL G
Sbjct:    3 TIFERIIEGAVECDKVFEDENFIVIKDKFPQAPVHLLIIPKKH--IEKLQDIQGDDFLLLAEAGKIIQLMARNFGIENGYRVVVNNGLEGGQSVFHLHIHLLGG 104          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: YHIT_BUCAP (Uncharacterized HIT-like protein BUsg_345 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=BUsg_345 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.147e-15
Identity = 40/107 (37.38%), Postives = 69/107 (64.49%), Query Frame = 1
Query:   19 IFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGQSVFHIHVHLL*GRQM 336
            IF KII ++  + ++Y+D  V +F D+ P+AP HI++IP  N  +  L+   +++  I   +LY A  +AK + + EDG++IV+N   NGGQ + ++H+HLL G ++
Sbjct:    7 IFQKIIKRETSTHIIYQDKIVTAFEDIAPKAPIHIIVIP--NIFIKTLNDINQKNKNIFAHMLYIAVKIAKNKKISEDGYKIVMNCNKNGGQEINYLHMHLLGGEKL 111          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: YHIT_RICPR (Uncharacterized HIT-like protein RP317 OS=Rickettsia prowazekii GN=RP317 PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.438e-15
Identity = 35/107 (32.71%), Postives = 66/107 (61.68%), Query Frame = 1
Query:   19 IFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLED-GFRIVINDGPNGGQSVFHIHVHLL*GRQM 336
            +F KII K +P++++YED ++L+F+D+ P AP HI++IPK N+ +       +   + +         +A + GL+  G+R++ N G   GQ++FH H H++ G+++
Sbjct:    7 VFAKIITKNLPAEIIYEDKQILAFKDIAPIAPVHIIVIPK-NEYIDYTDFISKASIDEIKHFFSKIADIANEAGLDKVGYRLITNKGEKSGQTIFHFHFHIIGGKKL 112          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: YHIT_CHLPN (HIT-like protein CPn_0488/CP_0266/CPj0488/CpB0508 OS=Chlamydia pneumoniae GN=CPn_0488 PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1
Query:   16 TIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGR----LLYTAKLV---AKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL*GRQM 336
            T+F +II+  I  + V+E++  ++ +D  PQAP H+LIIPK         K   R  +I G     +    K+V   A + G+ DG+R+VIN+G  GGQ+VFH+H+HLL GR +
Sbjct:    2 TVFKQIIDGLIDCEKVFENENFIAIKDRFPQAPVHLLIIPK---------KPIPRFQDIPGDEMILMAEAGKIVQELAAEFGIADGYRVVINNGAEGGQAVFHLHIHLLGGRPL 106          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: YHIT_AZOBR (Uncharacterized 13.2 kDa HIT-like protein in hisE 3'region OS=Azospirillum brasilense PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.092e-13
Identity = 39/110 (35.45%), Postives = 57/110 (51.82%), Query Frame = 1
Query:    7 DSPTIFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPKVNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL*GRQM 336
            D   +F +I+  +IP K V E +  L+F D+ PQAPTHIL+IPK          A     EI G      ++       E G+RI+ N G +  Q V H+H+H+  GR++
Sbjct:    6 DPNNVFARILRGEIPCKKVLETEHALAFHDINPQAPTHILVIPKGAYVDMDDFSARATEAEIAGLFRAVGEVARGAGAAEPGYRILSNCGEDANQEVPHLHIHVFAGRRL 115          
BLAST of CB293077 vs. ExPASy Swiss-Prot
Match: Y866_METJA (Uncharacterized HIT-like protein MJ0866 OS=Methanocaldococcus jannaschii GN=MJ0866 PE=4 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.512e-12
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 1
Query:   19 IFDKIINKKIPSKVVYEDDKVLSFRDVEPQAPTHILIIPK---------VNDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL 321
            IF KIIN +IP+KVVYED+ VL+F D+ P+   H L++PK          +D L    K  ++  E+L +L +            DG+ IV N+G   GQ V H+H H++
Sbjct:    3 IFCKIINGEIPAKVVYEDEHVLAFLDINPRNKGHTLVVPKKHYERFDEMPDDELCNFIKGVKKTVEVLKKLGF------------DGYNIVNNNGRVAGQEVNHVHFHII 100          
The following BLAST results are available for this feature:
BLAST of CB293077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
HITA_NEIGO9.071e-2144.55Protein hitA OS=Neisseria gonorrhoeae GN=hitA PE=4... [more]
YHIT_BUCBP1.226e-1739.81Uncharacterized HIT-like protein bbp_327 OS=Buchne... [more]
YHIT_BUCAI1.601e-1738.89Uncharacterized HIT-like protein BU357 OS=Buchnera... [more]
Y664_CHLMU1.770e-1641.35Uncharacterized HIT-like protein TC_0664 OS=Chlamy... [more]
YHIT_CHLTR8.786e-1640.38Uncharacterized HIT-like protein CT_385 OS=Chlamyd... [more]
YHIT_BUCAP1.147e-1537.38Uncharacterized HIT-like protein BUsg_345 OS=Buchn... [more]
YHIT_RICPR7.438e-1532.71Uncharacterized HIT-like protein RP317 OS=Ricketts... [more]
YHIT_CHLPN3.691e-1439.47HIT-like protein CPn_0488/CP_0266/CPj0488/CpB0508 ... [more]
YHIT_AZOBR9.092e-1335.45Uncharacterized 13.2 kDa HIT-like protein in hisE ... [more]
Y866_METJA4.512e-1237.27Uncharacterized HIT-like protein MJ0866 OS=Methano... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_05cb06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05cb06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293077 ID=CB293077; Name=CB293077; organism=Citrus sinensis; type=EST; length=540bp
CCTTCTGATTCGCCCACCATATTTGACAAAATAATTAACAAAAAAATCCC
ATCTAAAGTTGTTTATGAGGATGATAAGGTCTTATCCTTTAGGGACGTAG
AGCCCCAAGCTCCTACACACATTCTAATTATTCCCAAAGTGAATGATGGC
TTGACTGGACTTTCAAAGGCTGAGGAAAGGCATTGCGAAATTCTTGGCCG
CCTTCTTTACACTGCTAAGCTTGTTGCTAAACAGGAAGGACTAGAAGACG
GCTTTAGGATTGTGATTAATGATGGGCCAAATGGAGGTCAATCAGTTTTT
CACATCCACGTCCACCTCCTATGAGGACGACAAATGAACTGGCCCCCGGG
CTAAGATGAAGTATTTTGGGTGCCAAATTCTCTTATGAAAAAATGATTAC
GCCCTTTGTACTTTAATATGCATCAAGCTTCAAATAACAAATTACTTGGT
GGTTGCTCTGAACCACATTATTTGATATGATGTGAAATGACATTGTGCTG
GAAGGAGAAAAAGACCTTCAATAATAAGGGTGTGGTTTGT
back to top