CB293158

Overview
NameCB293158
Unique NameCB293158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.023e-31
Identity = 83/203 (40.89%), Postives = 125/203 (61.58%), Query Frame = 3
Query:   12 DLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME----GYQVNTLQLNPSAEDCGYGLKPAQPQGDT 605
            ++KRIEN  N   TF KRRNGLLKKAYELSVLCDAE AL++FSNRG+LYE+ +++S+  T+ERY+K C+  +   +VS  EA     QQE  KL+A+   L    RN++GE L  +  KEL++LE++++  + +IRS + + +   +  +Q +E  L   N+ L+ ++ E     +Q   + L P +    + L P   Q DT
Sbjct:   23 EIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEY-ANNSVKATIERYKKACSDSSNTGSVS--EANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERAQHQHQQMNLMPGSSSNYHELVPPPQQFDT 222          
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.336e-31
Identity = 84/203 (41.38%), Postives = 125/203 (61.58%), Query Frame = 3
Query:   12 DLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME----GYQVNTLQLNPSAEDCGYGLKPAQPQGDT 605
            ++KRIEN  N   TF KRRNGLLKKAYELSVLCDAE ALI+FS+RG+LYE+ +++S+  T+ERY+K C+  +   ++S  EA     QQE  KL+A+   LQ   RN+LGE L  L+ ++L++LE++++  + +IRS + + +   +  +Q +E  L   N+ L+ ++ E      Q    Q+N       Y L P   Q DT
Sbjct:   23 EIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVKATIERYKKACSDSSNTGSIS--EANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERAQQQQQQQQMNLMPGSSSYELVPPPHQFDT 222          
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.336e-31
Identity = 81/197 (41.12%), Postives = 119/197 (60.41%), Query Frame = 3
Query:   12 DLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGD 602
            ++KRIEN  N   TF KRRNGLLKKAYELSVLCDAE ALI+FS+RG+LYE+ +++S+  T+ERY+K    +     S  EA     QQE  KL+A+   LQ   RN LGE L  LN ++L +LE++++  + +IR+ + + +   +  +Q +E  L   N+ L+ ++ E  +   + L P +    Y L P Q   D
Sbjct:   23 EIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVKATIERYKKACSDSSNTG-SIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERSQQMNLMPGSS--SYDLVPPQQSFD 215          
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.887e-31
Identity = 76/170 (44.71%), Postives = 112/170 (65.88%), Query Frame = 3
Query:   12 DLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 518
            ++KRIEN  N   TF KRRNGLLKKAYELSVLCDAE AL+IFS RG+LYE+ +++S+  T+ERY+K C+     P ++  EA     QQE  KL+ +   +Q   R++LGE LG LN KEL++LE +L+  + ++RS + + ++  +  +Q +E  L   N  L+ ++ E
Sbjct:   22 EIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEY-ANNSVRGTIERYKKACSDAVNPPTIT--EANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITE 188          
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.076e-31
Identity = 79/188 (42.02%), Postives = 116/188 (61.70%), Query Frame = 3
Query:   12 DLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQ-VNTLQLNPSAEDCGY 572
            ++KRIEN  N   TF KRR+GLLKKAYELSVLCDAE AL++FS+RG+LYE+ S++S+ +T+ERY+K N      +  A E      QQE  KLK +   LQ S R L+G+ +  +N +EL+ LE +LD  L +IR+ + + +   +  +Q +E  L   N  LK ++ E  + + T+ +  SA    Y
Sbjct:   49 EIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEY-SNNSVKETIERYKKANSDTSNASTVA-EINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAESERGLQTVNMMGSASTSEY 234          
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.131e-30
Identity = 80/167 (47.90%), Postives = 107/167 (64.07%), Query Frame = 3
Query:    9 SDLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 509
            +++KRIEN  +   TF+KRRNGLLKKA+ELSVLCDAE ALIIFS RGKLYEF SSSS+ KT+ERYQK        +   R      S+ E   L  + E L+ S R ++GE L   + +EL+ LE QLD SL +IR+ + Q + +   +L+ KE+ L   NK L ++
Sbjct:    6 TEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNH--KRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEK 170          
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.519e-30
Identity = 83/212 (39.15%), Postives = 127/212 (59.91%), Query Frame = 3
Query:    9 SDLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQ---EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDT---FFHALEC 626
            + +KRIEN  +   TF+KRRNGLLKKA+ELSVLCDAE +LIIFS +GKLYEF +SS+M  T++RY +      +  VS +   E + Q    E   +  + E L+ S+R LLGE +G  + +EL+ +E+QL+ S+K IR+ +TQ   + + +L+ KE+ L+  N+ L ++   G   + +  N + E  G G + + P  +     F  L C
Sbjct:    6 TQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEF-ASSNMQDTIDRYLR----HTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKW--GSHESEVWSNKNQESTGRGDEESSPSSEVETQLFIGLPC 210          
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.297e-30
Identity = 76/185 (41.08%), Postives = 118/185 (63.78%), Query Frame = 3
Query:   12 DLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL--MEGYQVNTLQLNPSAE 560
            ++KRIEN  N   TF KRRNGLLKKAYELSVLCDAE ALI+FS RG+LYE+ +++++  T+ERY+K    +   + + +E      QQE  KL+ + + +Q S RNL+G+ L  L+ KEL+ +E +L+ ++ +IRS + + +L  +   Q +E  L   N  L+ ++  +E YQ +  Q+   +E
Sbjct:    7 EIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEY-ANNNIRSTIERYKKACSDSTNTS-TVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQHHHQMVSGSE 189          
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.785e-29
Identity = 73/165 (44.24%), Postives = 106/165 (64.24%), Query Frame = 3
Query:    9 SDLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLK 503
            ++LKRIEN  +   TF+KRRNGLLKKA+ELSVLCDAE ALI+FS RG+LYEF S+ S+ KT++RY+   Y     N    +      + + L L  + EAL  S+R +LGE L   + +EL  LE +L+ SL +IR  +T+ +   + +L+ KE+ L + N+ L+
Sbjct:    6 TELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKA--YTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDNENLR 168          
BLAST of CB293158 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.751e-29
Identity = 70/177 (39.55%), Postives = 114/177 (64.41%), Query Frame = 3
Query:   12 DLKRIENKINTLETFAKRRNGLLKKAYELSVLCDAEDALIIFSNRGKLYEFCSSSSMLKTLERYQKCN-----YGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQ 527
            ++KRIEN  +   TF KRRNGLLKKAYELSVLCDAE ALI+FS+RG+LYE+ +++++  T++RY+K +      GAP   V+A++      QQE  KL+ + + LQ + ++L+G+ +  L+ KEL+ LE +L+  + +IR+ + + +   +  +  +E  L   N  L+ ++ E  Q
Sbjct:    7 EIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYY----QQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKREIELQNDNMDLRTKIAEEEQ 179          
The following BLAST results are available for this feature:
BLAST of CB293158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
AG_SOLLC1.023e-3140.89Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AG_TOBAC1.336e-3141.38Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_PETHY1.336e-3141.12Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AGL5_ARATH3.887e-3144.71Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
MAD58_ORYSJ5.076e-3142.02MADS-box transcription factor 58 OS=Oryza sativa s... [more]
AGL14_ARATH1.131e-3047.90Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
SOC1_ARATH2.519e-3039.15MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
AGL11_ARATH4.297e-3041.08Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
MAD56_ORYSJ2.785e-2944.24MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD13_ORYSJ4.751e-2939.55MADS-box transcription factor 13 OS=Oryza sativa s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_05cf06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05cf06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293158 ID=CB293158; Name=CB293158; organism=Citrus sinensis; type=EST; length=770bp
GTCGTTAAAGTGACTTGAAGAGGATAGAGAACAAGATCAACACCCTAGAG
ACCTTTGCAAAGAGAAGAAATGGCCTATTGAAGAAAGCTTATGAGCTTTC
CGTTCTTTGTGATGCTGAGGATGCTCTCATCATTTTCTCCAATAGAGGAA
AGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACGCTTGAGAGG
TACCAGAAGTGCAACTATGGAGCACCAGAACCGAATGTGTCCGCAAGGGA
GGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAAGCTTAAAGCACGAT
ATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAGAAGAACTTGGC
CCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGATATGTC
ATTGAAGCAGATCAGATCAACAAGAACTCAGTACATGCTGGATACCCTTA
CTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAAATAAGACCCTC
AAACAAAGGTTGATGGAGGGATACCAAGTGAACACACTTCAATTGAATCC
TAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCTCAGGGCG
ATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAATTGGATAC
CAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTCTGAATAA
TTACATGCAAAGATGGCTACCATGCTAAGAGAGCGGCGGGCATTACCAGT
CAATGTATTGCAGTTGATCC
back to top