CB293198

Overview
NameCB293198
Unique NameCB293198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODM1_STAAR (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MRSA252) GN=sodA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 45/133 (33.83%), Postives = 60/133 (45.11%), Query Frame = 3 
Query:  210 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPPFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 602
            F+L   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132
[Close]
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODM1_STAAN (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain N315) GN=sodA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 45/133 (33.83%), Postives = 60/133 (45.11%), Query Frame = 3 
Query:  210 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPPFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 602
            F+L   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132
[Close]
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODM1_STAAM (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sodA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 45/133 (33.83%), Postives = 60/133 (45.11%), Query Frame = 3 
Query:  210 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPPFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 602
            F+L   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132
[Close]
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODM1_STAAC (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain COL) GN=sodA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 45/133 (33.83%), Postives = 60/133 (45.11%), Query Frame = 3 
Query:  210 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPPFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 602
            F+L   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132
[Close]
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODM1_STAAB (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 45/133 (33.83%), Postives = 60/133 (45.11%), Query Frame = 3 
Query:  210 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPPFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 602
            F+L   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132
[Close]
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODM1_STAA8 (Superoxide dismutase [Mn] 1 OS=Staphylococcus aureus (strain NCTC 8325) GN=sodA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 45/133 (33.83%), Postives = 60/133 (45.11%), Query Frame = 3 
Query:  210 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPPFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 602
            F+L   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132
[Close]
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODM1_STAA3 (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain USA300) GN=sodA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 45/133 (33.83%), Postives = 60/133 (45.11%), Query Frame = 3 
Query:  210 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPPFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 602
            F+L   PY  +ALEPH  K+T+E H  +HH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEK--IKEQWGSLEEFKKEFADKAAARFGSGWAWLV 132
[Close]
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODM_SALTY (Superoxide dismutase [Mn] OS=Salmonella typhimurium GN=sodA PE=3 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 48/139 (34.53%), Postives = 60/139 (43.17%), Query Frame = 3 
Query:  210 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPP------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 608
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D +P        NNA    NH  FW                  IERDFGS             T+FGSGWAWLV K
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENLPEFASLPVEELI----TKLDQVPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLK 135
[Close]
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODM_HAEIN (Superoxide dismutase [Mn] OS=Haemophilus influenzae GN=sodA PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 48/130 (36.92%), Postives = 59/130 (45.38%), Query Frame = 3 
Query:  231 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-----TELGDGKSLEDV-VIASYNKGDLLPPFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 602
            Y  NALEPH    T+E H  KHH+AYV+N N  + G      E+  G  + ++  I +  +G L    NNA    NH  FW                  IERDFGS             T+FGSGWAWLV
Sbjct:   10 YAYNALEPHFDAQTMEIHHSKHHQAYVNNANAALEGLPAELVEMYPGHLISNLDKIPAEKRGALR---NNAGGHTNHSLFW--KSLKKGTTLQGALKDAIERDFGSVDAFKAEFEKAAATRFGSGWAWLV 134
[Close]
BLAST of CB293198 vs. ExPASy Swiss-Prot
Match: SODM_SHIFL (Superoxide dismutase [Mn] OS=Shigella flexneri GN=sodA PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 48/139 (34.53%), Postives = 60/139 (43.17%), Query Frame = 3 
Query:  210 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPP------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 608
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D LP        NNA    NH  FW                  IERDFGS             ++FGSGWAWLV K
Sbjct:    3 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI----TKLDQLPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLK 135
The following BLAST results are available for this feature:
BLAST of CB293198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
SODM1_STAAR2.414e-1333.83Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAN2.414e-1333.83Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAM2.414e-1333.83Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAC2.414e-1333.83Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAB2.414e-1333.83Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAA82.414e-1333.83Superoxide dismutase [Mn] 1 OS=Staphylococcus aure... [more]
SODM1_STAA32.414e-1333.83Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM_SALTY5.379e-1334.53Superoxide dismutase [Mn] OS=Salmonella typhimuriu... [more]
SODM_HAEIN5.379e-1336.92Superoxide dismutase [Mn] OS=Haemophilus influenza... [more]
SODM_SHIFL7.025e-1334.53Superoxide dismutase [Mn] OS=Shigella flexneri GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ch07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ch07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293198 ID=CB293198; Name=CB293198; organism=Citrus sinensis; type=EST; length=709bp
ACACACAGAGTTGATCAGGCTTTGCTCCCCTCTGCTATAACCAAAGCTGT
AATATATAAGGCATGGCATCGGCGGCAGCAGCAGCTTCATCTGCTCCAAC
AATTTGGTTGACTGGCCAAGGACTTGGTGGAAGGAGTACGCGATTGCCTT
TTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGGCCGAATT
TCTGCGAAATTTGATTTGAAGCCTCCACCTTATCCACTGAATGCTCTGGA
GCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAAGCACCACA
GAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTGAGCTTGGT
GATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAACAAGGGTGA
CTTGCTTCCACCTTTCAATAATGCTGCACAGGCGTGGAACCATGACTTCT
TCTGGGAATCCATGAAACCGGGTGGTGGCGGAAAGCCGTCTGGTGAACTT
CTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTCTTGAGGA
ATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCCTGGCTTG
TATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGAATCCTCTT
CCATCGGAGAAGGACAAGAGCCTTTTAGTGGAGAAGACTCCCAATGCTGT
CAATCCTCT
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