CB293217

Overview
NameCB293217
Unique NameCB293217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: PPI2_SYNY3 (Peptidyl-prolyl cis-trans isomerase slr1251 OS=Synechocystis sp. (strain PCC 6803) GN=slr1251 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.550e-47
Identity = 91/167 (54.49%), Postives = 117/167 (70.06%), Query Frame = 3
Query:  273 KVYFDIEVGGKPIGRIVMGLFGKAVPKTV--------GEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 749
            KV+FDI +G    GRIVM LF +  PKT         GEKG+GK+GK L++KGS FHR+I  FM Q            ESI+GE FADENF+LKH  PG+LSMANAGP+TNGSQFF+T V   WLDG+HVVFG+V+ G++++ ++EA G QSG+ K  +VIS+ GE+
Sbjct:    4 KVFFDITIGSDTAGRIVMELFDEVTPKTAENFRALCTGEKGVGKAGKPLHFKGSHFHRVITDFMAQGGDFTRGNGTGGESIYGEKFADENFQLKHDRPGLLSMANAGPNTNGSQFFLTFVPCPWLDGKHVVFGEVVEGLEILEQLEANGSQSGQTKQAIVISDCGEI 170          
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.550e-47
Identity = 90/168 (53.57%), Postives = 117/168 (69.64%), Query Frame = 3
Query:  273 KVYFDIEVGGKPIGRIVMGLFGKAVPKTV--------GEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 752
            KVYFD+ + G+P GRIVM L+    P+T         GEKG+G +GK L++KGS FHR+IP+FM Q            ESI+G  F DENF+ KHTGPG+LSMANAG +TNGSQFFI TV T WLDG+HVVFG+V+ G+DVV+ IE  G  SG+P   VV+++ G+++
Sbjct:    5 KVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQLS 172          
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.629e-46
Identity = 95/165 (57.58%), Postives = 120/165 (72.73%), Query Frame = 3
Query:  261 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVGE-KGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEM 749
            +VT KV+FD+E+GG+P+G+IV+GLFG+ VPKTV     + +  +   Y GS FHR+I +FMIQ             SI+GE F DENFKL+H GPG LSMANAG DTNGSQFFITT  TSWLDG+HVVFGK+L GMDVVR+IEA  + +G+ P   VVI+N+G +
Sbjct:   23 RVTDKVFFDMEIGGRPVGKIVIGLFGEVVPKTVKNFVELAQRAEGEGYVGSKFHRVIENFMIQGGDFTRGDGTGGRSIYGERFEDENFKLQHYGPGWLSMANAGEDTNGSQFFITTAKTSWLDGKHVVFGKILEGMDVVREIEATPKGAGDRPIEDVVIANAGHI 187          
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.127e-46
Identity = 99/181 (54.70%), Postives = 123/181 (67.96%), Query Frame = 3
Query:  249 EELEKVTHKVYFDIEVG---GKPIGRIVMGLFGKAVPKTV--------GEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEMAL 755
            E   K+THKVYFDI VG   GK  GRIV+GL+G  VP+TV        GEKG G       YKGS+FHR+I  FMIQ            +S++G +F DENFKL H GPGVLSMANAGP+TNGSQFFI T+ TSWLDGRHVVFG+V+ GM+VV+ IE +    G+ P+ KVVI++ G++ +
Sbjct:   83 EPQSKITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFG-------YKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQLPM 256          
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.629e-46
Identity = 92/168 (54.76%), Postives = 114/168 (67.86%), Query Frame = 3
Query:  273 KVYFDIEVGGKPIGRIVMGLFGKAVPKTV--------GEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 752
            +V+FD+ VGG P GRIVM L+   VPKT         GEKG+GKSGK L+YKGS+FHR+IP FM Q            ESI+GE F DE F  K   PGVLSMANAGP+TNGSQFFI TV T WLDG+HVVFG+V+ GMDVV+ IE  G ++G     V +++ G+++
Sbjct:    5 RVFFDMTVGGAPAGRIVMELYANEVPKTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQLS 172          
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.190e-46
Identity = 91/168 (54.17%), Postives = 114/168 (67.86%), Query Frame = 3
Query:  273 KVYFDIEVGGKPIGRIVMGLFGKAVPKTV--------GEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 752
            KV+FD+ + G P GRIVM L+    P+T         GEKG+G+SGK L+YKGS+FHR+IP+FM Q            ESI+G  FADENF  +HTGPG+LSMANAG  TNGSQFFI T  T WLDG+HVVFGKV+ GM+VVR IE  G  SG+    V I++ G+++
Sbjct:    5 KVFFDMAIAGNPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQLS 172          
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 183.726 bits (465), Expect = 1.056e-45
Identity = 100/174 (57.47%), Postives = 119/174 (68.39%), Query Frame = 3
Query:  261 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTV--------GEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEA---EGRQSGEPKSKVVISNSGEM 749
            KVT KVYFD+ +G + IGR+V+GLFGK VPKTV        GEKG G       YK S FHR+I  FMIQ            +SI+GE F DENFKLKH GPG +SMANAG DTNGSQFFITTV T+WLDG+HVVFGKVL GMDVVRK+E+   +GR   +P   V I++ G++
Sbjct:   41 KVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVESTKTDGRD--KPLKDVTIADCGKI 205          
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.379e-45
Identity = 100/172 (58.14%), Postives = 116/172 (67.44%), Query Frame = 3
Query:  264 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVGE-----KGIGKSGKTLYY--KGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEMAL 755
            +T+KVYFDIE GGKP+GRIVMGL+GK VPKT         G    G+ L Y  +GSSFHRII +FMIQ            +SI+G  F DENFKLKHTGPGVLSMANAG DTNGSQFFI TV T+WLD RHVVFG VL GMDVV  +E      G+ P   + I+ SGE+ +
Sbjct:   43 ITNKVYFDIEHGGKPLGRIVMGLYGKTVPKTAENFRALATGKNSDGEDLGYGYEGSSFHRIIKNFMIQGGDFTKGDGTGGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIAASGELPI 214          
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.379e-45
Identity = 96/177 (54.24%), Postives = 118/177 (66.67%), Query Frame = 3
Query:  234 EGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVGE-KGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAE--GRQSGEPKSKVVISNSGEMAL 755
            +G   E   KVT K++FDIE+GG+  GRIV+GLFG AVPKTV   K +    K   Y+GS FHRIIP+FMIQ             SI+G  F DE+F LKH GPGVLSMANAGP+TNGSQFFI TV T WLD RHVVFG V+ G+DVV+++E++   +    PK    I+ SGE+ L
Sbjct:   70 QGEVAELQAKVTSKIFFDIEIGGESAGRIVIGLFGDAVPKTVENFKTLSTGAKGYGYQGSFFHRIIPNFMIQGGDFTEGNGTGGVSIYGSKFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDVVKQLESQETSKLDNSPKKPCKIAKSGELPL 246          
BLAST of CB293217 vs. ExPASy Swiss-Prot
Match: PPIB_HUMAN (Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.801e-45
Identity = 96/172 (55.81%), Postives = 117/172 (68.02%), Query Frame = 3
Query:  261 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTV--------GEKGIGKSGKTLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS-GEPKSKVVISNSGEM 749
            KVT KVYFD+ +G + +GR++ GLFGK VPKTV        GEKG G       YK S FHR+I  FMIQ            +SI+GE F DENFKLKH GPG +SMANAG DTNGSQFFITTV T+WLDG+HVVFGKVL GM+VVRK+E+    S  +P   V+I++ G++
Sbjct:   41 KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 205          
The following BLAST results are available for this feature:
BLAST of CB293217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
PPI2_SYNY39.550e-4754.49Peptidyl-prolyl cis-trans isomerase slr1251 OS=Syn... [more]
CP18C_ARATH9.550e-4753.57Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
CYP6_CAEEL1.629e-4657.58Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
CP20B_ARATH2.127e-4654.70Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
CYPH_MAIZE3.629e-4654.76Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
CYPH_LUPLU6.190e-4654.17Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
PPIB_BOVIN1.056e-4557.47Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]
PPIB_CRYNE1.379e-4558.14Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
CYPB_VICFA1.379e-4554.24Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
PPIB_HUMAN1.801e-4555.81Peptidyl-prolyl cis-trans isomerase B OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05da06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05da06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293217 ID=CB293217; Name=CB293217; organism=Citrus sinensis; type=EST; length=822bp
GCCCGTGGGATCTTTCATGTTTCAGTTCACTCTCAAGTCTCACAAGAAAC
CAAGCAGCGGTTTCATCTGAACACGACAACAACAATCATCATCGGAGAGA
GATGGCTACAAAGACAAGATTGGTCTCAGTCGCTCTTTTGTGGGCTCTGG
TTCTTTTTCTAACCCTAGCTTTCATTCAGAATCGTTTAAGCGATGTTGGG
ATCTCATCACAGAAGAAAATTCATAACAGTGAGGAAGGCAACTCAAGAGA
GGAATTGGAAAAAGTGACCCACAAAGTTTACTTTGATATCGAGGTTGGTG
GGAAACCCATTGGTCGCATAGTTATGGGCCTATTTGGGAAGGCTGTCCCT
AAAACTGTAGGGGAGAAAGGAATTGGGAAGAGTGGGAAAACACTTTATTA
TAAAGGGAGCTCATTTCACAGGATTATTCCAAGCTTTATGATCCAGGGCG
GTGATTTTACTCTTGGTGATGGGCGTGGTGGAGAGTCAATATTTGGGGAA
AGTTTTGCTGATGAGAACTTTAAACTGAAGCACACTGGACCAGGAGTTCT
GTCGATGGCAAATGCTGGGCCAGACACCAATGGGTCACAGTTCTTCATTA
CGACTGTCATAACTAGCTGGTTGGATGGCCGCCATGTTGTGTTTGGCAAA
GTGCTCTCTGGGATGGACGTTGTCCGCAAAATTGAAGCGGAAGGAAGGCA
GAGTGGGGAGCCCAAAAGTAAAGTTGTTATATCTAACAGTGGTGAAATGG
CTTTGTGACAGACCATCCTTATTAAATTTTTATATGGAAATTGATAACTT
GTCCTATATTTGTGCTATCTGT
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