CB293224

Overview
NameCB293224
Unique NameCB293224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA7 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain PA7) GN=lldD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.239e-34
Identity = 74/143 (51.75%), Postives = 96/143 (67.13%), Query Frame = -3
Query:  230 DGFLSWKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIS 658
            D  +SWKDLEW+R   N P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LAA GE GVR ++E+++ E  + M LTG  S+  IS
Sbjct:  229 DPSISWKDLEWIREFWNGPMVIKGILDPEDAKDAVKFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELAILADSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTGAKSIGEIS 371          
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: CYB2_HANAN (Cytochrome b2, mitochondrial OS=Hansenula anomala GN=CYB2 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.819e-34
Identity = 69/149 (46.31%), Postives = 104/149 (69.80%), Query Frame = -3
Query:  230 MDGFLSWKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGR-----VPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIS 661
            +D  LSWKD+ +++SIT +PI+IKG+  +ED + A E G+ G+++SNHG RQLDY+ A +  L EV+  +K R     + I +DGGVRRGTDV KAL LGA+ V +GRP +Y +++ G+ GV + I++LKDE E+ M L G   ++ ++
Sbjct:  385 IDPSLSWKDIAFIKSITKMPIVIKGVQRKEDVLLAAEHGLQGVVLSNHGGRQLDYTRAPVEVLAEVMPILKERGLDQKIDIFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYAMSSYGDKGVTKAIQLLKDEIEMNMRLLGVNKIEELT 533          
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAE (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa GN=lldD PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.508e-34
Identity = 73/143 (51.05%), Postives = 96/143 (67.13%), Query Frame = -3
Query:  230 DGFLSWKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIS 658
            D  +SWKDLEW+R   + P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LAA GE GVR ++E+++ E  + M LTG  S+  IS
Sbjct:  229 DPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVKFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELAILADSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTGAKSIGEIS 371          
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA8 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain LESB58) GN=lldD PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.508e-34
Identity = 73/143 (51.05%), Postives = 96/143 (67.13%), Query Frame = -3
Query:  230 DGFLSWKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIS 658
            D  +SWKDLEW+R   + P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LAA GE GVR ++E+++ E  + M LTG  S+  IS
Sbjct:  229 DPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVKFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELAILADSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTGAKSIGEIS 371          
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAB (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lldD PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.895e-33
Identity = 72/143 (50.35%), Postives = 96/143 (67.13%), Query Frame = -3
Query:  230 DGFLSWKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHIS 658
            D  ++WKDLEW+R   + P++IKGIL  EDA  AV+ G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  VY LAA GE GVR ++E+++ E  + M LTG  S+  IS
Sbjct:  229 DPSIAWKDLEWIREFWDGPMVIKGILDPEDARDAVKFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELAILADSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTGAKSIGEIS 371          
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: CYB2_YEAST (Cytochrome b2, mitochondrial OS=Saccharomyces cerevisiae GN=CYB2 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.233e-33
Identity = 70/148 (47.30%), Postives = 100/148 (67.57%), Query Frame = -3
Query:  233 MDGFLSWKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVV-----HAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHI 661
            +D  L+WKD+E ++  T LPI+IKG+   ED IKA E+GV+G+++SNHG RQLD+S A I  L E +       +K ++ + +DGGVRRGTDV KAL LGA+ V +GRP +Y  +  G  GV + IE+L+DE E++M L G  S+  +
Sbjct:  406 IDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAEL 553          
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: LLDD_VIBCM (L-lactate dehydrogenase [cytochrome] OS=Vibrio cholerae serotype O1 (strain M66-2) GN=lldD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.223e-33
Identity = 69/144 (47.92%), Postives = 94/144 (65.28%), Query Frame = -3
Query:  227 DGFLSWKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHISR 658
            D  +SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   +T+ AL  +  AVKG + IL+D G+R G DV + LALGA   ++GR  +Y LAA+G  GV  ++++ + E  + M LTG  S+  +SR
Sbjct:  229 DPSISWKDLEWIRDFWDGPMIIKGILDTEDAKDAVRFGADGIVVSNHGGRQLDGVLSTVQALPAIADAVKGDLKILVDSGIRTGLDVVRMLALGADCTMLGRSFIYALAAQGRAGVENLLDLYEKEMRVAMTLTGAKSIAELSR 372          
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: LLDD_VIBCH (L-lactate dehydrogenase [cytochrome] OS=Vibrio cholerae GN=lldD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.223e-33
Identity = 69/144 (47.92%), Postives = 94/144 (65.28%), Query Frame = -3
Query:  227 DGFLSWKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHISR 658
            D  +SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   +T+ AL  +  AVKG + IL+D G+R G DV + LALGA   ++GR  +Y LAA+G  GV  ++++ + E  + M LTG  S+  +SR
Sbjct:  229 DPSISWKDLEWIRDFWDGPMIIKGILDTEDAKDAVRFGADGIVVSNHGGRQLDGVLSTVQALPAIADAVKGDLKILVDSGIRTGLDVVRMLALGADCTMLGRSFIYALAAQGRAGVENLLDLYEKEMRVAMTLTGAKSIAELSR 372          
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: LLDD_ENTS8 (L-lactate dehydrogenase [cytochrome] OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.203e-33
Identity = 70/145 (48.28%), Postives = 95/145 (65.52%), Query Frame = -3
Query:  224 DGFLSWKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHISRK 658
            D  +SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  +Y LA  GE GV  ++ +++ E  + M LTG  S+K I+R+
Sbjct:  229 DPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGEKGVANLLNLIEKEMRVAMTLTGAKSIKEITRE 373          
BLAST of CB293224 vs. ExPASy Swiss-Prot
Match: LLDD_ENT38 (L-lactate dehydrogenase [cytochrome] OS=Enterobacter sp. (strain 638) GN=lldD PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.407e-33
Identity = 72/158 (45.57%), Postives = 100/158 (63.29%), Query Frame = -3
Query:  185 DGFLSWKDLEWVRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQAVLIGRPVVYGLAAKGEYGVRRVIEMLKDEFELTMALTGCPSVKHISRKHVRTEQERIHSML 658
            D  +SWKDLEW+R   + P++IKGIL  EDA  AV  G  GI+VSNHG RQLD   ++  AL  +  AVKG + IL D G+R G DV + +ALGA +VL+GR  +Y LA  G+ GV  ++ +++ E ++ M LTG  ++  IS+  +  E  RI S L
Sbjct:  229 DPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGQAGVANLLNLIEKEMKVAMTLTGAKTISEISKDSLVQELSRIPSGL 386          
The following BLAST results are available for this feature:
BLAST of CB293224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_PSEA72.239e-3451.75L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
CYB2_HANAN3.819e-3446.31Cytochrome b2, mitochondrial OS=Hansenula anomala ... [more]
LLDD_PSEAE8.508e-3451.05L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEA88.508e-3451.05L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEAB1.895e-3350.35L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
CYB2_YEAST3.233e-3347.30Cytochrome b2, mitochondrial OS=Saccharomyces cere... [more]
LLDD_VIBCM4.223e-3347.92L-lactate dehydrogenase [cytochrome] OS=Vibrio cho... [more]
LLDD_VIBCH4.223e-3347.92L-lactate dehydrogenase [cytochrome] OS=Vibrio cho... [more]
LLDD_ENTS87.203e-3348.28L-lactate dehydrogenase [cytochrome] OS=Enterobact... [more]
LLDD_ENT389.407e-3345.57L-lactate dehydrogenase [cytochrome] OS=Enterobact... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05da12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05da12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293224 ID=CB293224; Name=CB293224; organism=Citrus sinensis; type=EST; length=783bp
CTTGCTAGAATTAAAAATTAATCCATTACAATGCAATACCCAATGTTGTA
TCATATTATTATAATTCCATACTATTACAATACAAAATAATACAATACAA
CTGTATTAAAATAATACAATACAACATAATATAATAGAGTGTGTCAAACA
CACCCTTAAACATTTCTGCAACAAAATAATATTACAGCATCGAATGGATT
CTCTCCTGCTCAGTTCTCACATGCTTCCTGGAAATATGTTTCACACTAGG
ACAGCCAGTAAGGGCCATGGTCAACTCAAACTCATCCTTCAGCATTTCGA
TGACGCGTCTCACCCCATATTCCCCTTTTGCAGCAAGGCCGTAAACTACA
GGCCTTCCAATAAGTACAGCTTGTGCACCGAGGGCCAATGCCTTGAAAAC
ATCTGTTCCTCGCCGCACTCCTCCATCCATAAGAATTGGAACTCTTCCTT
TAACGGCATGAACCACCTCTTCCAGAGCAGAAATAGTGGCAGGACTATAA
TCTAACTGTCGAGCTCCGTGATTGGAGACAATAATCCCAGCAACACCTAC
TTCCACAGCTTTTATTGCATCTTCACGAGTAAGTATCCCCTTGATCAAAA
TTGGTAAGTTTGTAATAGATCTTACCCATTCTAAATCCTTCCAACTTAAA
AAACCATCCATGGTCTCGTTGGCATCAGCTTCAAAATTCGAACCTGTATC
AAAGCTGACTTTGGTTGATAAGAGGCCTTCCAAATTCTTCAACGGCGGCG
TAATCATTTTGTTCTTTATATCTGCCTCCCTTC
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