CB293260

Overview
NameCB293260
Unique NameCB293260
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RHLB_ECOSE (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain SE11) GN=rhlB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.226e-32
Identity = 76/201 (37.81%), Postives = 118/201 (58.71%), Query Frame = 2 
Query:  128 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 730
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PTRELA Q+H D +    A GL     YGG  Y  Q   L+ G+D++IGT GR+ D+ ++ +I+L +++  VLDEAD M  +GF++D+  +  ++  AN+   +LFSATL   V+ ++
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELA 209
[Close]
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RHLB_ECOLU (ATP-dependent RNA helicase rhlB OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.226e-32
Identity = 76/201 (37.81%), Postives = 118/201 (58.71%), Query Frame = 2 
Query:  128 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 730
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PTRELA Q+H D +    A GL     YGG  Y  Q   L+ G+D++IGT GR+ D+ ++ +I+L +++  VLDEAD M  +GF++D+  +  ++  AN+   +LFSATL   V+ ++
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELA 209
[Close]
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RHLB_ECOLI (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain K12) GN=rhlB PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.226e-32
Identity = 76/201 (37.81%), Postives = 118/201 (58.71%), Query Frame = 2 
Query:  128 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 730
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PTRELA Q+H D +    A GL     YGG  Y  Q   L+ G+D++IGT GR+ D+ ++ +I+L +++  VLDEAD M  +GF++D+  +  ++  AN+   +LFSATL   V+ ++
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELA 209
[Close]
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RHLB_ECOLC (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rhlB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.226e-32
Identity = 76/201 (37.81%), Postives = 118/201 (58.71%), Query Frame = 2 
Query:  128 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 730
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PTRELA Q+H D +    A GL     YGG  Y  Q   L+ G+D++IGT GR+ D+ ++ +I+L +++  VLDEAD M  +GF++D+  +  ++  AN+   +LFSATL   V+ ++
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELA 209
[Close]
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RHLB_ECOL6 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O6 GN=rhlB PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.226e-32
Identity = 76/201 (37.81%), Postives = 118/201 (58.71%), Query Frame = 2 
Query:  128 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 730
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PTRELA Q+H D +    A GL     YGG  Y  Q   L+ G+D++IGT GR+ D+ ++ +I+L +++  VLDEAD M  +GF++D+  +  ++  AN+   +LFSATL   V+ ++
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELA 209
[Close]
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RHLB_ECOL5 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.226e-32
Identity = 76/201 (37.81%), Postives = 118/201 (58.71%), Query Frame = 2 
Query:  128 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 730
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PTRELA Q+H D +    A GL     YGG  Y  Q   L+ G+D++IGT GR+ D+ ++ +I+L +++  VLDEAD M  +GF++D+  +  ++  AN+   +LFSATL   V+ ++
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELA 209
[Close]
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RHLB_ECOK1 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O1:K1 / APEC GN=rhlB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.226e-32
Identity = 76/201 (37.81%), Postives = 118/201 (58.71%), Query Frame = 2 
Query:  128 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 730
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PTRELA Q+H D +    A GL     YGG  Y  Q   L+ G+D++IGT GR+ D+ ++ +I+L +++  VLDEAD M  +GF++D+  +  ++  AN+   +LFSATL   V+ ++
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELA 209
[Close]
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RHLB_ECOHS (ATP-dependent RNA helicase rhlB OS=Escherichia coli O9:H4 (strain HS) GN=rhlB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.226e-32
Identity = 76/201 (37.81%), Postives = 118/201 (58.71%), Query Frame = 2 
Query:  128 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 730
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PTRELA Q+H D +    A GL     YGG  Y  Q   L+ G+D++IGT GR+ D+ ++ +I+L +++  VLDEAD M  +GF++D+  +  ++  AN+   +LFSATL   V+ ++
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELA 209
[Close]
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RHLB_ECODH (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain K12 / DH10B) GN=rhlB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.226e-32
Identity = 76/201 (37.81%), Postives = 118/201 (58.71%), Query Frame = 2 
Query:  128 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 730
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PTRELA Q+H D +    A GL     YGG  Y  Q   L+ G+D++IGT GR+ D+ ++ +I+L +++  VLDEAD M  +GF++D+  +  ++  AN+   +LFSATL   V+ ++
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELA 209
[Close]
BLAST of CB293260 vs. ExPASy Swiss-Prot
Match: RHLB_ECOBW (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain K12 / BW2952) GN=rhlB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.226e-32
Identity = 76/201 (37.81%), Postives = 118/201 (58.71%), Query Frame = 2 
Query:  128 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTRELAKQVHEDFDVYGGAVGLTSCCLYGGAPYHAQEFKLKKGIDVVIGTPGRIKDHIERGNIDLSSLKFRVLDEADEMLRMGFVEDVELILGKVEDANKVQTLLFSATLPSWVKHIS 730
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PTRELA Q+H D +    A GL     YGG  Y  Q   L+ G+D++IGT GR+ D+ ++ +I+L +++  VLDEAD M  +GF++D+  +  ++  AN+   +LFSATL   V+ ++
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELA 209
The following BLAST results are available for this feature:
BLAST of CB293260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_ECOSE2.226e-3237.81ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOLU2.226e-3237.81ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOLI2.226e-3237.81ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOLC2.226e-3237.81ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOL62.226e-3237.81ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOL52.226e-3237.81ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOK12.226e-3237.81ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOHS2.226e-3237.81ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECODH2.226e-3237.81ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOBW2.226e-3237.81ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05dc09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dc09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293260 ID=CB293260; Name=CB293260; organism=Citrus sinensis; type=EST; length=810bp
GCCCATAGAAGAGCCGGTGAATTTGAAATCGGAGAAGGAGAACCATAAGA
AGAAGAAAGCGAAAGTTGAGCCTGAGGCTGGAGTGGAAGAGCAGGAGAGG
GGTGAAAGCGAACATCCGAATGCGGTTTCGAGGTTTAGAATATCGGTGCC
ATTAAGGGAAAAGCTCAAGTCCAAGGGGATTGAGTCTTTGTTTCCTATTC
AAGCTATGACTTTTGATATGGTTCTTGATGGCTCTGATTTAGTCGGACGT
GCACGGACCGGTCAGGGTAAAACTTTAGCCTTTGTGTTGCCAATTTTAGA
GTCTCTAACGAATGGGCCAACAAAAGCGTCCAAGAAGACTGGATATGGCA
GGGCTCCAAGTGTTTTGGTGCTTTTGCCTACTAGGGAATTGGCCAAACAG
GTTCATGAGGACTTTGATGTCTATGGCGGGGCAGTGGGACTGACCTCATG
TTGCTTATATGGAGGAGCTCCTTATCATGCTCAGGAGTTTAAATTAAAGA
AAGGGATTGATGTAGTCATTGGAACCCCTGGACGTATTAAGGATCACATT
GAGAGGGGCAATATTGACTTGAGTTCATTGAAGTTTCGGGTCCTTGATGA
GGCTGATGAGATGCTTAGGATGGGTTTCGTTGAAGATGTTGAACTTATTC
TGGGTAAAGTCGAGGATGCTAATAAAGTTCAAACACTTCTCTTCAGTGCC
ACCTTGCCAAGCTGGGTGAAGCATATTTCCACCAAGTTTCTTAAATCAGA
CAAGAAAACCATAGATCTTGTTGGGCATGAGAAAATGAAGGCTAGTACCA
ATGTCCGGCA
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