CB293316

Overview
NameCB293316
Unique NameCB293316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSEE4 (Fatty acid oxidation complex subunit alpha OS=Pseudomonas entomophila (strain L48) GN=fadB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.355e-40
Identity = 88/236 (37.29%), Postives = 128/236 (54.24%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYE--KGSKP 747
            V +G+LT  K   AL  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E       ILA+NTSTI +N++ +     +  +G HFF+P H+MPL+E++R E++S   +   +              +C GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L+D+ G            + FPDR    +   VD L ++ R G+ NGKG Y YE  K  KP
Sbjct:  365 VEKGRLTPAKMAEALNAIRPTLSYGDFGNVDIVVEAVVENPKVKQAVLAEVEGQVKEDAILASNTSTISINLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSEVAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAVDALYEANRLGQKNGKGFYAYETDKRGKP 600          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSESM (Fatty acid oxidation complex subunit alpha OS=Pseudomonas syringae pv. tomato GN=fadB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.688e-40
Identity = 84/231 (36.36%), Postives = 127/231 (54.98%), Query Frame = 1
Query:   58 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            +G+LT  K   AL  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E     + ILA+NTSTI ++++ +     +  +G HFF+P H+MPL+E++R E++S + +   +              +C GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L+D+ G            + FPDR    +   VD L ++ R G+ NGKG Y YE   K
Sbjct:  367 KGRLTAAKMAEALNAIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVEANVGENTILASNTSTISISLLAQALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSEEAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFARLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAVDALYEANRLGQKNGKGFYVYETDKK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSEU2 (Fatty acid oxidation complex subunit alpha OS=Pseudomonas syringae pv. syringae (strain B728a) GN=fadB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.161e-39
Identity = 83/231 (35.93%), Postives = 126/231 (54.55%), Query Frame = 1
Query:   58 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            +G+LT  K   AL  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E     + ILA+NTSTI ++++ +     +  +G HFF+P H+MPL+E++R E++S + +   +              +C GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L+D+ G            + FPDR    +   +D L  + R G+ NGKG Y YE   K
Sbjct:  367 KGRLTAAKMAEALNAIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVEANVGENTILASNTSTISISLLAQALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSEEAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFARLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYDAKRLGQKNGKGFYAYETDKK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSEPF (Fatty acid oxidation complex subunit alpha OS=Pseudomonas fluorescens (strain Pf0-1) GN=fadB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.830e-38
Identity = 83/233 (35.62%), Postives = 125/233 (53.65%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V +G++T  K    L  ++  L Y +F  VD+V+EAV+E+  +KQ + +E+E       ILA+NTSTI ++++ +     +  +G HFF+P H+MPL+E++R E++S   I   +              +C GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L+D+ G            + FPDR    +   +D+L ++ R G+ NGKG Y YE   K
Sbjct:  365 VDKGRMTAAKMAEVLNGIRPTLSYGDFGHVDLVVEAVVENPKVKQAVLAEVEDKVKEDTILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSELAIATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKIMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDVLYEAKRLGQKNGKGFYAYEADKK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSEFR (Fatty acid oxidation complex subunit alpha OS=Pseudomonas fragi GN=fadB PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.390e-38
Identity = 82/233 (35.19%), Postives = 125/233 (53.65%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V +G++T  K    L  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E       ILA+NTSTI ++++ +     +  +G HFF+P H+MPL+E++R E++S   +   +              +C GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L+D+ G            + FPDR    +   +D L ++ R G+ NGKG Y YE   K
Sbjct:  365 VDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSEF5 (Fatty acid oxidation complex subunit alpha OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=fadB PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.390e-38
Identity = 83/233 (35.62%), Postives = 126/233 (54.08%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V +G++T  K    L  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E       ILA+NTSTI ++++ +     +  +G HFF+P H+MPL+E++R E++S   +   +              +C GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L+D+ G            + FPDR    +   VD+L ++ R G+ NGKG Y YE   K
Sbjct:  365 VDKGRMTAAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQIVLAEVEGQVKEDTILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSELAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKIMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAVDVLYEAKRLGQKNGKGFYAYETDKK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSEAE (Fatty acid oxidation complex subunit alpha OS=Pseudomonas aeruginosa GN=fadB PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.390e-38
Identity = 85/236 (36.02%), Postives = 126/236 (53.39%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYE--KGSKP 747
            V +G+LT  K   AL  ++  + Y +F +VD+V+EAV+E+  +KQ + +E+E A     I+A+NTSTI ++++ +     +   G HFF+P H+MPL+E++R E+T    I   +              +C GF VNR  FPY      L+S GVD  RID  +  FG P+GP  L D+ G            + FPDR        VD++ ++ R G+ NGKG Y YE  K  KP
Sbjct:  365 VEKGRLTPAKMAEALNGIRPTMSYGDFGNVDIVVEAVVENPKVKQAVLAEVEGAVKEDAIIASNTSTISISLLAQALKRPENFCGMHFFNPVHMMPLVEVIRGEKTGETAIATTVAYAKKMGKSPIVVNDCPGFLVNRVLFPYFGGFAKLLSFGVDFVRIDKVMEKFGWPMGPAYLSDVVGIDTGHHGRDVMAEGFPDRMAVEGKTAVDVMYEANRLGQKNGKGFYAYETDKRGKP 600          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSEAB (Fatty acid oxidation complex subunit alpha OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=fadB PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.390e-38
Identity = 85/236 (36.02%), Postives = 126/236 (53.39%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYE--KGSKP 747
            V +G+LT  K   AL  ++  + Y +F +VD+V+EAV+E+  +KQ + +E+E A     I+A+NTSTI ++++ +     +   G HFF+P H+MPL+E++R E+T    I   +              +C GF VNR  FPY      L+S GVD  RID  +  FG P+GP  L D+ G            + FPDR        VD++ ++ R G+ NGKG Y YE  K  KP
Sbjct:  365 VEKGRLTPAKMAEALNGIRPTMSYGDFGNVDIVVEAVVENPKVKQAVLAEVEGAVKEDAIIASNTSTISISLLAQALKRPENFCGMHFFNPVHMMPLVEVIRGEKTGETAIATTVAYAKKMGKSPIVVNDCPGFLVNRVLFPYFGGFAKLLSFGVDFVRIDKVMEKFGWPMGPAYLSDVVGIDTGHHGRDVMAEGFPDRMAVEGKTAVDVMYEANRLGQKNGKGFYAYETDKRGKP 600          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSEA8 (Fatty acid oxidation complex subunit alpha OS=Pseudomonas aeruginosa (strain LESB58) GN=fadB PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.390e-38
Identity = 85/236 (36.02%), Postives = 126/236 (53.39%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYE--KGSKP 747
            V +G+LT  K   AL  ++  + Y +F +VD+V+EAV+E+  +KQ + +E+E A     I+A+NTSTI ++++ +     +   G HFF+P H+MPL+E++R E+T    I   +              +C GF VNR  FPY      L+S GVD  RID  +  FG P+GP  L D+ G            + FPDR        VD++ ++ R G+ NGKG Y YE  K  KP
Sbjct:  365 VEKGRLTPAKMAEALNGIRPTMSYGDFGNVDIVVEAVVENPKVKQAVLAEVEGAVKEDAIIASNTSTISISLLAQALKRPENFCGMHFFNPVHMMPLVEVIRGEKTGETAIATTVAYAKKMGKSPIVVNDCPGFLVNRVLFPYFGGFAKLLSFGVDFVRIDKVMEKFGWPMGPAYLSDVVGIDTGHHGRDVMAEGFPDRMAVEGKTAVDVMYEANRLGQKNGKGFYAYETDKRGKP 600          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSYA2 (Fatty acid oxidation complex subunit alpha OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=fadB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.121e-38
Identity = 83/237 (35.02%), Postives = 126/237 (53.16%), Query Frame = 1
Query:   49 LVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYE--KGSKP 747
            +V RGK+T  K    L  ++  L+Y +F + D+VIEAV+E+  +K+ +  E+E      CILA+NTSTI +  + E     +  +G HFF+P H MPL+E++R E++S + I   +              +C GF VNR  FPY  +  LL+  G D   +D  +  FG P+GP  L+D+ G       ++   + FPDR        ++LL ++ R G+ NG G Y YE  K  KP
Sbjct:  365 MVDRGKMTPAKMGETLSRIRPTLNYGDFAETDIVIEAVVENPNVKRAVLKEVEGLVKDDCILASNTSTISITFLAEALERPENFVGMHFFNPVHRMPLVEVIRGEKSSEEAIATTVALASKMGKVPVVVNDCPGFLVNRVLFPYFGAFDLLLKQGADFAHVDKVMEKFGWPMGPAYLIDVVGLDTGVHGAEVMAEGFPDRMKPDYKGAIELLYENKRLGQKNGVGFYKYEMDKRGKP 601          
The following BLAST results are available for this feature:
BLAST of CB293316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
FADB_PSEE44.355e-4037.29Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSESM5.688e-4036.36Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEU22.161e-3935.93Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEPF1.830e-3835.62Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEFR2.390e-3835.19Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEF52.390e-3835.62Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEAE2.390e-3836.02Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEAB2.390e-3836.02Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEA82.390e-3836.02Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSYA23.121e-3835.02Fatty acid oxidation complex subunit alpha OS=Psyc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05df09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05df09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293316 ID=CB293316; Name=CB293316; organism=Citrus sinensis; type=EST; length=749bp
GCCATTTAAGGGACAGGGATAAAAACAATAGAAGCAAATGTTCCATGATT
GGTAACAAGAGGAAAATTGACACAGGATAAAGCAAACAATGCCCTCAAAA
TGCTTAAAGGAGTGCTGGACTACTCAGAATTTAAAGATGTTGACATGGTC
ATAGAGGCAGTCATTGAAAGTGTTCCTCTGAAACAAAAAATATTCAGCGA
ACTAGAGAAAGCTTGCCCTCCTCACTGCATTTTGGCAACAAACACTTCTA
CTATTGACCTGAACATAGTTGGAGAAAAGACCAGCTCTCAGGATCGAATT
ATAGGGGCACATTTTTTCAGTCCTGCTCATGTGATGCCACTTTTGGAGAT
TGTTCGGACAGAGAGAACTTCTGCACAAGTAATTCTTGATCTCATGACAG
TCGGGAAAATCATAAAGAAAGTTCCTGTTGTGGTGGGTAACTGCACTGGC
TTTGCAGTCAATCGAGCGTTCTTCCCATATTCACAAAGTGCTCGCTTGCT
GGTTAGTTTAGGTGTGGATGTGTTCAGAATTGACAGTGCAATCAGAAGTT
TTGGCCTCCCCATCGGCCCTTTCCAGCTTCTGGACTTAGCAGGCTACGGA
GTCGCTGCTGCAACTTCAAAAGAATTTGACAAGGCATTCCCTGACCGTTC
ATTCCAGTCTCCTTTGGTTGATCTTTTGTTGAAAAGTGGACGAAATGGTA
AAGCCAATGGAAAAGGATTATATACATATGAAAAGGGAAGCAAGCCAAA
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