CB293316

Overview
NameCB293316
Unique NameCB293316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_ECO55 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain 55989 / EAEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.724e-32
Identity = 80/234 (34.19%), Postives = 121/234 (51.71%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+    H I A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+ +  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K
Sbjct:  360 VRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNSAAHTIFASNTSSLPIGDIAAHATRPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAVLVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_YERPP (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis (strain Pestoides F) GN=fadJ PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.270e-31
Identity = 71/217 (32.72%), Postives = 113/217 (52.07%), Query Frame = 1
Query:   94 LKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            + ++ G  DY  F+ VD+V+EAV E + LKQ++ +++E+    H I A+NTS++ ++ +       +++IG H+FSP   MPL+E++  E+TS + I   +              +  GF VNR   PY   A   +  G  +  +D+A+  FG P+GP  LLD  G  VA        +    R    P  D++LK GR G+ NG+G Y Y   +K
Sbjct:  408 MMLISGSTDYRGFERVDIVVEAVFEDLSLKQQMVADIERFGAAHTIFASNTSSLPISQIAALAQRPEQVIGLHYFSPVDKMPLVEVIPHEKTSEETIATTVALARKQGKTAIVVADRAGFYVNRILAPYINEAARCLLDGEPIESVDNALVDFGFPVGPMMLLDEVGIDVATKIMPILVEQLGPRFAAPPSFDVILKDGRKGRKNGRGFYLYSNPTK 624          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_YERPN (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadJ PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.270e-31
Identity = 71/217 (32.72%), Postives = 113/217 (52.07%), Query Frame = 1
Query:   94 LKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            + ++ G  DY  F+ VD+V+EAV E + LKQ++ +++E+    H I A+NTS++ ++ +       +++IG H+FSP   MPL+E++  E+TS + I   +              +  GF VNR   PY   A   +  G  +  +D+A+  FG P+GP  LLD  G  VA        +    R    P  D++LK GR G+ NG+G Y Y   +K
Sbjct:  381 MMLISGSTDYRGFERVDIVVEAVFEDLSLKQQMVADIERFGAAHTIFASNTSSLPISQIAALAQRPEQVIGLHYFSPVDKMPLVEVIPHEKTSEETIATTVALARKQGKTAIVVADRAGFYVNRILAPYINEAARCLLDGEPIESVDNALVDFGFPVGPMMLLDEVGIDVATKIMPILVEQLGPRFAAPPSFDVILKDGRKGRKNGRGFYLYSNPTK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_YERPE (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis GN=fadJ PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.270e-31
Identity = 71/217 (32.72%), Postives = 113/217 (52.07%), Query Frame = 1
Query:   94 LKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            + ++ G  DY  F+ VD+V+EAV E + LKQ++ +++E+    H I A+NTS++ ++ +       +++IG H+FSP   MPL+E++  E+TS + I   +              +  GF VNR   PY   A   +  G  +  +D+A+  FG P+GP  LLD  G  VA        +    R    P  D++LK GR G+ NG+G Y Y   +K
Sbjct:  381 MMLISGSTDYRGFERVDIVVEAVFEDLSLKQQMVADIERFGAAHTIFASNTSSLPISQIAALAQRPEQVIGLHYFSPVDKMPLVEVIPHEKTSEETIATTVALARKQGKTAIVVADRAGFYVNRILAPYINEAARCLLDGEPIESVDNALVDFGFPVGPMMLLDEVGIDVATKIMPILVEQLGPRFAAPPSFDVILKDGRKGRKNGRGFYLYSNPTK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_YERPA (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadJ PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.270e-31
Identity = 71/217 (32.72%), Postives = 113/217 (52.07%), Query Frame = 1
Query:   94 LKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            + ++ G  DY  F+ VD+V+EAV E + LKQ++ +++E+    H I A+NTS++ ++ +       +++IG H+FSP   MPL+E++  E+TS + I   +              +  GF VNR   PY   A   +  G  +  +D+A+  FG P+GP  LLD  G  VA        +    R    P  D++LK GR G+ NG+G Y Y   +K
Sbjct:  381 MMLISGSTDYRGFERVDIVVEAVFEDLSLKQQMVADIERFGAAHTIFASNTSSLPISQIAALAQRPEQVIGLHYFSPVDKMPLVEVIPHEKTSEETIATTVALARKQGKTAIVVADRAGFYVNRILAPYINEAARCLLDGEPIESVDNALVDFGFPVGPMMLLDEVGIDVATKIMPILVEQLGPRFAAPPSFDVILKDGRKGRKNGRGFYLYSNPTK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_YERP3 (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadJ PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.270e-31
Identity = 71/217 (32.72%), Postives = 113/217 (52.07%), Query Frame = 1
Query:   94 LKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            + ++ G  DY  F+ VD+V+EAV E + LKQ++ +++E+    H I A+NTS++ ++ +       +++IG H+FSP   MPL+E++  E+TS + I   +              +  GF VNR   PY   A   +  G  +  +D+A+  FG P+GP  LLD  G  VA        +    R    P  D++LK GR G+ NG+G Y Y   +K
Sbjct:  381 MMLISGSTDYRGFERVDIVVEAVFEDLSLKQQMVADIERFGAAHTIFASNTSSLPISQIAALAQRPEQVIGLHYFSPVDKMPLVEVIPHEKTSEETIATTVALARKQGKTAIVVADRAGFYVNRILAPYINEAARCLLDGEPIESVDNALVDFGFPVGPMMLLDEVGIDVATKIMPILVEQLGPRFAAPPSFDVILKDGRKGRKNGRGFYLYSNPTK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHEPW (Fatty acid oxidation complex subunit alpha OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=fadB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.270e-31
Identity = 75/237 (31.65%), Postives = 121/237 (51.05%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTY--EKGSKP 747
            V RG+    K    L  +   LDY+  K  D+V+EAV+E   +K  + +E+E+      I+ +NTSTI +N++ +     +R  G HFF+P H MPL+E++R E +S + +  ++              +C GF VNR  FPY      L++ G D   ID  + + FG P+GP  LLD+ G            + FP+R  ++    +D++ ++ R G+ N KG Y Y  ++  KP
Sbjct:  364 VKRGRSNPAKMAAVLNNITPALDYAPVKAADVVVEAVVEHPKVKSMVLAEVEEHVSEDAIITSNTSTISINLLAKSLKKPERFCGMHFFNPVHKMPLVEVIRGEHSSDETVASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSGLLADGADFAAIDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPERMGKTGKDAIDVMFEAERFGQKNNKGFYQYSVDRRGKP 600          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: ECHP_RAT (Peroxisomal bifunctional enzyme OS=Rattus norvegicus GN=Ehhadh PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.270e-31
Identity = 78/214 (36.45%), Postives = 107/214 (50.00%), Query Frame = 1
Query:  127 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVA-------AATSKEFDKAFPDR----SFQSPLVDLLLKSGRNGKANGKGLYTYEK 735
            E   VD+V+EAV E + LK+K+F+EL   C P   L TNTS ++++ +   T     +IG HFFSPAHVM LLE++ +  +S   I  +M+             NC GF  NR   PY      L+  G     +D  +  FG  +GPF++ DLAG  V          T        P R    S  SPL D+L ++GR G+  GKG Y Y+K
Sbjct:  370 ELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDK 583          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: ECHA_HUMAN (Trifunctional enzyme subunit alpha, mitochondrial OS=Homo sapiens GN=HADHA PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.270e-31
Identity = 76/233 (32.62%), Postives = 116/233 (49.79%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V +  LT  + ++    L G LDY  F+  DMVIEAV E + LK ++  E+E   P HCI A+NTS + ++ +   +   +++IG H+FSP   M LLEI+ TE+TS       +              +  GF   R   P       ++  GVD  ++DS   SFG P+G   L+D  G  VA   +++  K F +R       L+  ++  G  G+ +GKG Y Y++G K
Sbjct:  412 VKKKALTSFERDSIFSNLTGQLDYQGFEKADMVIEAVFEDLSLKHRVLKEVEAVIPDHCIFASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDTSASAVAVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVIRILQEGVDPKKLDSLTTSFGFPVGAATLVDEVGVDVAKHVAEDLGKVFGERFGGGNPELLTQMVSKGFLGRKSGKGFYIYQEGVK 644          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_VIBSL (Fatty acid oxidation complex subunit alpha OS=Vibrio splendidus (strain LGP32) GN=fadB PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.166e-31
Identity = 78/237 (32.91%), Postives = 121/237 (51.05%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTY--EKGSKP 747
            ++RG+L   K    L  +   L Y+  +  D+++EAV+E+  +K  + SE+E       +L +NTSTI +N++ +     +   G HFF+P H MPL+EI+R E TS + I  ++              +C GF VNR  FPY     +L+  G D  +ID  + R FG P+GP  LLD+ G   A        + FP+R  +     +D L  + + G+ NG G YTY  +K  +P
Sbjct:  365 LSRGRLDGFKMAGILSSITPSLHYAGVEQSDVIVEAVVENPKVKAAVLSEVEGLVGEDTVLTSNTSTIPINLLAKSLKRPENFCGMHFFNPVHRMPLVEIIRGEHTSEETINRVVAYAAKMGKSPIVVNDCPGFFVNRVLFPYFGGFSMLLRDGADFTKIDKVMERKFGWPMGPAYLLDVVGLDTAHHAQAVMAQGFPERMGKEGRDAIDALYVAEKYGQKNGSGFYTYSVDKRGRP 601          
The following BLAST results are available for this feature:
BLAST of CB293316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
FADJ_ECO559.724e-3234.19Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_YERPP1.270e-3132.72Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPN1.270e-3132.72Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPE1.270e-3132.72Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPA1.270e-3132.72Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERP31.270e-3132.72Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_SHEPW1.270e-3131.65Fatty acid oxidation complex subunit alpha OS=Shew... [more]
ECHP_RAT1.270e-3136.45Peroxisomal bifunctional enzyme OS=Rattus norvegic... [more]
ECHA_HUMAN1.270e-3132.62Trifunctional enzyme subunit alpha, mitochondrial ... [more]
FADB_VIBSL2.166e-3132.91Fatty acid oxidation complex subunit alpha OS=Vibr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05df09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05df09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293316 ID=CB293316; Name=CB293316; organism=Citrus sinensis; type=EST; length=749bp
GCCATTTAAGGGACAGGGATAAAAACAATAGAAGCAAATGTTCCATGATT
GGTAACAAGAGGAAAATTGACACAGGATAAAGCAAACAATGCCCTCAAAA
TGCTTAAAGGAGTGCTGGACTACTCAGAATTTAAAGATGTTGACATGGTC
ATAGAGGCAGTCATTGAAAGTGTTCCTCTGAAACAAAAAATATTCAGCGA
ACTAGAGAAAGCTTGCCCTCCTCACTGCATTTTGGCAACAAACACTTCTA
CTATTGACCTGAACATAGTTGGAGAAAAGACCAGCTCTCAGGATCGAATT
ATAGGGGCACATTTTTTCAGTCCTGCTCATGTGATGCCACTTTTGGAGAT
TGTTCGGACAGAGAGAACTTCTGCACAAGTAATTCTTGATCTCATGACAG
TCGGGAAAATCATAAAGAAAGTTCCTGTTGTGGTGGGTAACTGCACTGGC
TTTGCAGTCAATCGAGCGTTCTTCCCATATTCACAAAGTGCTCGCTTGCT
GGTTAGTTTAGGTGTGGATGTGTTCAGAATTGACAGTGCAATCAGAAGTT
TTGGCCTCCCCATCGGCCCTTTCCAGCTTCTGGACTTAGCAGGCTACGGA
GTCGCTGCTGCAACTTCAAAAGAATTTGACAAGGCATTCCCTGACCGTTC
ATTCCAGTCTCCTTTGGTTGATCTTTTGTTGAAAAGTGGACGAAATGGTA
AAGCCAATGGAAAAGGATTATATACATATGAAAAGGGAAGCAAGCCAAA
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