CB293316

Overview
NameCB293316
Unique NameCB293316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_ECOUT (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain UTI89 / UPEC) GN=fadB PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.166e-31
Identity = 77/232 (33.19%), Postives = 118/232 (50.86%), Query Frame = 1
Query:   58 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            RGK+   K    +  +   LDY+ F  VD+V+EAV+E+  +K+ + +E E+   P  +LA+NTSTI ++ +       +   G HFF+P H MPL+EI+R E++S + I  ++              +C GF VNR  FPY      L+  G    +ID  + + FG P+GP  LLD+ G   A          FP R  +     +D L  + R G+ NG G + Y++ SK
Sbjct:  366 RGKIDGLKLAGVISTIHPTLDYAGFDRVDVVVEAVVENPKVKKAVLAETEQKVRPDTVLASNTSTIPISELANALERPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGAGFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDALFDANRFGQKNGLGFWRYKEDSK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_ECO81 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O81 (strain ED1a) GN=fadB PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.166e-31
Identity = 77/232 (33.19%), Postives = 118/232 (50.86%), Query Frame = 1
Query:   58 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            RGK+   K    +  +   LDY+ F  VD+V+EAV+E+  +K+ + +E E+   P  +LA+NTSTI ++ +       +   G HFF+P H MPL+EI+R E++S + I  ++              +C GF VNR  FPY      L+  G    +ID  + + FG P+GP  LLD+ G   A          FP R  +     +D L  + R G+ NG G + Y++ SK
Sbjct:  366 RGKIDGLKLAGVISTIHPTLDYAGFDRVDVVVEAVVENPKVKKAVLAETEQKVRPDTVLASNTSTIPISELANALERPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGAGFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDALFDANRFGQKNGLGFWRYKEDSK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_ECO45 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=fadB PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.166e-31
Identity = 77/232 (33.19%), Postives = 118/232 (50.86%), Query Frame = 1
Query:   58 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            RGK+   K    +  +   LDY+ F  VD+V+EAV+E+  +K+ + +E E+   P  +LA+NTSTI ++ +       +   G HFF+P H MPL+EI+R E++S + I  ++              +C GF VNR  FPY      L+  G    +ID  + + FG P+GP  LLD+ G   A          FP R  +     +D L  + R G+ NG G + Y++ SK
Sbjct:  366 RGKIDGLKLAGVISTIHPTLDYAGFDRVDVVVEAVVENPKVKKAVLAETEQKVRPDTVLASNTSTIPISELANALERPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGAGFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDALFDANRFGQKNGLGFWRYKEDSK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SHEFN (Fatty acid oxidation complex subunit alpha OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadJ PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.829e-31
Identity = 75/231 (32.47%), Postives = 113/231 (48.92%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V R  +T    +N + ++    +Y+  KD D+V+EAV E + LK K+  ++E+ C  + I A+NTS++ +  +    S  + +IG H+FSP   MPL+E++  + TS + I   +              +  GF VNR    Y   A  L+  G  +  +D A+  FG P+GP  LLD  G  V A  S   +K   DR       D LL   R G+ NGKG Y Y   +K
Sbjct:  364 VKRRHMTPIARDNIMALMTTTTEYTGIKDADIVVEAVFEDLALKHKMVQDVERECGENTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIAHKTTSPETIATTVAFARKQGKTPIVVQDGAGFYVNRILALYMNEAAQLLLEGQRIEHLDRALVKFGFPVGPMTLLDEVGIDVGAKISPILEKELGDRFKAPAAFDKLLADDRKGRKNGKGFYQYGPKAK 594          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_VIBPA (Fatty acid oxidation complex subunit alpha OS=Vibrio parahaemolyticus GN=fadB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.829e-31
Identity = 74/237 (31.22%), Postives = 123/237 (51.90%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTY--EKGSKP 747
            + +G++   K    L  +   L Y+  ++ D+++EAV+E+  +K  + SE+E       ++ +NTSTI +N++ +     +   G HFF+P H MPL+EI+R E+TS + I  ++              +C GF VNR  FPY     +L+  G D  ++D  + R FG P+GP  LLD+ G   A        + FP+R  +     +D L ++ + G+ NG G Y+Y  +K  KP
Sbjct:  365 LAQGRIDGFKMAGILASITPSLHYAGIENSDVIVEAVVENPKVKATVLSEVESHVGEDTVITSNTSTIPINLLAQSLKRPENFCGMHFFNPVHRMPLVEIIRGEKTSDETINRVVAYAAKMGKSPIVVNDCPGFFVNRVLFPYFGGFSMLLRDGADFTKVDKVMERKFGWPMGPAYLLDVVGIDTAHHAQAVMAEGFPERMGKQGRDAIDALFEANKYGQKNGNGFYSYTIDKKGKP 601          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_VIBHB (Fatty acid oxidation complex subunit alpha OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=fadB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.829e-31
Identity = 75/237 (31.65%), Postives = 123/237 (51.90%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTY--EKGSKP 747
            ++RG++   K    L  +   L Y+  ++ D+++EAV+E+  +K  + SE+E       ++ +NTSTI +N++ +     +   G HFF+P H MPL+EI+R E TS + I  ++              +C GF VNR  FPY     +L+  G D  +ID  + R FG P+GP  LLD+ G   A        + FP+R  +     +D L ++ + G+ NG G Y+Y  ++  KP
Sbjct:  365 LSRGRIDGFKMAGILASITPSLHYTGIEESDVIVEAVVENPKVKAAVLSEVESHVGEDTVITSNTSTIPINLLAKSLKRPENFCGMHFFNPVHRMPLVEIIRGEHTSDETINRVVAYAAKMGKSPIVVNDCPGFFVNRVLFPYFGGFSMLLRDGADFTKIDKIMERKFGWPMGPAYLLDVVGIDTAHHAQAVMAQGFPERMGKQGRDAIDALFEASKYGQKNGSGFYSYTIDRKGKP 601          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHISS (Fatty acid oxidation complex subunit alpha OS=Shigella sonnei (strain Ss046) GN=fadB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.829e-31
Identity = 77/232 (33.19%), Postives = 118/232 (50.86%), Query Frame = 1
Query:   58 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            RGK+   K    +  +   LDY+ F  VD+V+EAV+E+  +K+ + +E E+      +LA+NTSTI ++ +       +   G HFF+P H MPL+EI+R E++S + I  ++              +C GF VNR  FPY      L+  G D  +ID  + + FG P+GP  LLD+ G   A          FP R  +     +D L  + R G+ NG G + Y++ SK
Sbjct:  366 RGKIDGLKLAGVISTIHPTLDYAGFDRVDIVVEAVVENPKVKKAVLAETEQKVRQDTVLASNTSTIPISELANALERPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDALFDANRFGQKNGLGFWRYKEDSK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHIFL (Fatty acid oxidation complex subunit alpha OS=Shigella flexneri GN=fadB PE=3 SV=4)

HSP 1 Score: 135.576 bits (340), Expect = 2.829e-31
Identity = 77/232 (33.19%), Postives = 118/232 (50.86%), Query Frame = 1
Query:   58 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            RGK+   K    +  +   LDY+ F  VD+V+EAV+E+  +K+ + +E E+      +LA+NTSTI ++ +       +   G HFF+P H MPL+EI+R E++S + I  ++              +C GF VNR  FPY      L+  G D  +ID  + + FG P+GP  LLD+ G   A          FP R  +     +D L  + R G+ NG G + Y++ SK
Sbjct:  366 RGKIDGLKLAGVISTIHPTLDYAGFDRVDIVVEAVVENPKVKKAVLAETEQKVRQDTVLASNTSTIPISELANALERPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDALFDANRFGQKNGLGFWRYKEDSK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHIF8 (Fatty acid oxidation complex subunit alpha OS=Shigella flexneri serotype 5b (strain 8401) GN=fadB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.829e-31
Identity = 77/232 (33.19%), Postives = 118/232 (50.86%), Query Frame = 1
Query:   58 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            RGK+   K    +  +   LDY+ F  VD+V+EAV+E+  +K+ + +E E+      +LA+NTSTI ++ +       +   G HFF+P H MPL+EI+R E++S + I  ++              +C GF VNR  FPY      L+  G D  +ID  + + FG P+GP  LLD+ G   A          FP R  +     +D L  + R G+ NG G + Y++ SK
Sbjct:  366 RGKIDGLKLAGVISTIHPTLDYAGFDRVDIVVEAVVENPKVKKAVLAETEQKVRQDTVLASNTSTIPISELANALERPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDALFDANRFGQKNGLGFWRYKEDSK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_IDILO (Fatty acid oxidation complex subunit alpha OS=Idiomarina loihiensis GN=fadB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.829e-31
Identity = 81/237 (34.18%), Postives = 118/237 (49.79%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTY--EKGSKP 747
            V RGK+  +K    L  +   L     KDVD+V+EAV+E+  +K  + +E+E       IL +NTSTI +  + +     ++  G HFF+P H MPL+EI+R E+TS   +  ++              +C GF VNR  FPY      +V  GVD   ID  + + FG P+GP  L D+ G   A   +   +  FP R    +S  +  L  + R G+ NGKG Y Y  +K  KP
Sbjct:  364 VERGKVNNEKMIKILSSITPTLLNDAVKDVDIVVEAVVENPKVKGSVLAEIEGVIGDDAILTSNTSTISITELAKNLKRPEKFCGMHFFNPVHKMPLVEIIRGEKTSDDTVNAVVAYALKLGKTPIVVNDCPGFLVNRVLFPYLAGFAGMVDEGVDFVGIDKVMEKQFGWPMGPAYLSDVVGIDTADHCTVVMEAGFPTRMKRDESSAIAKLAAAERYGQKNGKGFYVYGTDKKGKP 600          
The following BLAST results are available for this feature:
BLAST of CB293316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
FADB_ECOUT2.166e-3133.19Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADB_ECO812.166e-3133.19Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADB_ECO452.166e-3133.19Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_SHEFN2.829e-3132.47Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_VIBPA2.829e-3131.22Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADB_VIBHB2.829e-3131.65Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADB_SHISS2.829e-3133.19Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADB_SHIFL2.829e-3133.19Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADB_SHIF82.829e-3133.19Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADB_IDILO2.829e-3134.18Fatty acid oxidation complex subunit alpha OS=Idio... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05df09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05df09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293316 ID=CB293316; Name=CB293316; organism=Citrus sinensis; type=EST; length=749bp
GCCATTTAAGGGACAGGGATAAAAACAATAGAAGCAAATGTTCCATGATT
GGTAACAAGAGGAAAATTGACACAGGATAAAGCAAACAATGCCCTCAAAA
TGCTTAAAGGAGTGCTGGACTACTCAGAATTTAAAGATGTTGACATGGTC
ATAGAGGCAGTCATTGAAAGTGTTCCTCTGAAACAAAAAATATTCAGCGA
ACTAGAGAAAGCTTGCCCTCCTCACTGCATTTTGGCAACAAACACTTCTA
CTATTGACCTGAACATAGTTGGAGAAAAGACCAGCTCTCAGGATCGAATT
ATAGGGGCACATTTTTTCAGTCCTGCTCATGTGATGCCACTTTTGGAGAT
TGTTCGGACAGAGAGAACTTCTGCACAAGTAATTCTTGATCTCATGACAG
TCGGGAAAATCATAAAGAAAGTTCCTGTTGTGGTGGGTAACTGCACTGGC
TTTGCAGTCAATCGAGCGTTCTTCCCATATTCACAAAGTGCTCGCTTGCT
GGTTAGTTTAGGTGTGGATGTGTTCAGAATTGACAGTGCAATCAGAAGTT
TTGGCCTCCCCATCGGCCCTTTCCAGCTTCTGGACTTAGCAGGCTACGGA
GTCGCTGCTGCAACTTCAAAAGAATTTGACAAGGCATTCCCTGACCGTTC
ATTCCAGTCTCCTTTGGTTGATCTTTTGTTGAAAAGTGGACGAAATGGTA
AAGCCAATGGAAAAGGATTATATACATATGAAAAGGGAAGCAAGCCAAA
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