CB293316

Overview
NameCB293316
Unique NameCB293316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSEFS (Fatty acid oxidation complex subunit alpha OS=Pseudomonas fluorescens (strain SBW25) GN=fadB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.121e-38
Identity = 82/233 (35.19%), Postives = 124/233 (53.22%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V +G++T  K    L  ++  L Y +F  VD+V+EAV+E+  +KQ + +E+E       ILA+NTSTI ++++ +     +  +G HFF+P H+MPL+E++R E++S   +   +              +C GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L+D+ G            + FPDR    +   +D L ++ R G+ NGKG Y YE   K
Sbjct:  365 VDKGRMTAAKMAEVLNGIRPTLSYGDFGHVDLVVEAVVENPKVKQAVLAEVEAQVKDDTILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSELAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSEA7 (Fatty acid oxidation complex subunit alpha OS=Pseudomonas aeruginosa (strain PA7) GN=fadB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.953e-38
Identity = 84/236 (35.59%), Postives = 125/236 (52.97%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYE--KGSKP 747
            V +G+LT  K   AL  ++  + Y +F +VD+V+EAV+E+  +KQ + +E+E A     I+A+NTSTI ++++ +     +   G HFF+P H+MPL+E++R E+T    I   +              +C GF VNR  FPY      L+  GVD  RID  +  FG P+GP  L D+ G            + FPDR        VD++ ++ R G+ NGKG Y YE  K  KP
Sbjct:  365 VEKGRLTPAKMAEALNGIRPTMSYGDFGNVDIVVEAVVENPKVKQAVLAEVEGAVKEDAIIASNTSTISISLLAQALKRPENFCGMHFFNPVHMMPLVEVIRGEKTGETAIATTVAYAKKMGKSPIVVNDCPGFLVNRVLFPYFGGFAKLLGFGVDFVRIDKVMEKFGWPMGPAYLSDVVGIDTGHHGRDVMAEGFPDRMAVEGKTAVDVMYEANRLGQKNGKGFYAYETDKRGKP 600          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSEMY (Fatty acid oxidation complex subunit alpha OS=Pseudomonas mendocina (strain ymp) GN=fadB PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.186e-37
Identity = 82/236 (34.75%), Postives = 126/236 (53.39%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYE--KGSKP 747
            V +G++T  K   AL  ++  + Y +F +VD+V+EAV+E+  +KQ + +E+E       ILA+NTSTI ++++ +     +  +G HFF+P H+MPL+E++R E++S   +   +              +C GF VNR  FPY      L+  GVD  RID  +  FG P+GP  L D+ G            + FPDR        VD++ ++ R G+ NGKG Y YE  K  KP
Sbjct:  365 VEKGRMTPAKMAEALNAIRPTMSYGDFGNVDIVVEAVVENPKVKQIVLAEVEDVVREDAILASNTSTISISLLAQALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSEVAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFSKLLGFGVDFVRIDKVMEKFGWPMGPAYLSDVVGIDTGHHGRDVMAEGFPDRMAVEGKTAVDVMYEANRLGQKNGKGFYAYETDKRGKP 600          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSEU5 (Fatty acid oxidation complex subunit alpha OS=Pseudomonas stutzeri (strain A1501) GN=fadB PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.311e-36
Identity = 79/233 (33.91%), Postives = 121/233 (51.93%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V +G+LT +K   AL  ++  + Y +F +VD+V+EAV+E+  +K  + +E+E       I+A+NTSTI ++ + +     +   G HFF+P H+MPL+E++R E+TS   I   +              +C GF VNR  FPY       ++ GVD  R D  +  FG P+GP  L+D+ G            + FPDR        VD++  + R G+ NGKG Y YE   K
Sbjct:  365 VEKGRLTPEKMAQALNAIRPTMSYGDFGNVDIVVEAVVENPKVKHAVLAEVEGHVREDAIIASNTSTISISYLAQALKRPENFCGMHFFNPVHMMPLVEVIRGEKTSETAIATTVAYAKKMGKSPVVVNDCPGFLVNRVLFPYFGGFARAIAHGVDFVRADKVMEKFGWPMGPAYLMDVVGMDTGHHGRDVMAEGFPDRMKDDTRTAVDVMYDANRLGQKNGKGFYAYEMDKK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSYCK (Fatty acid oxidation complex subunit alpha OS=Psychrobacter cryohalolentis (strain K5) GN=fadB PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.713e-36
Identity = 81/237 (34.18%), Postives = 125/237 (52.74%), Query Frame = 1
Query:   49 LVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYE--KGSKP 747
            +V RGK+T  K    L  ++  L+Y +F + D+VIEAV+E+  +K+ +  E+E      CILA+NTSTI +  + E     +  +G HFF+P + MPL+E++R E++S + I   +              +C GF VNR  FPY  +  LL+  G D   +D  +  FG P+GP  L+D+ G       ++   + FPDR        ++ L ++ R G+ NG G Y YE  K  KP
Sbjct:  365 MVDRGKITPAKMGETLSRIRPTLNYGDFAETDIVIEAVVENPNVKRAVLKEVEGLVKDDCILASNTSTISITFLAEALERPENFVGMHFFNPVNRMPLVEVIRGEKSSEEAISTTVALATKMGKVPVVVNDCPGFLVNRVLFPYFGAFDLLLKQGADFAHVDKVMEKFGWPMGPAYLIDVVGLDTGVHGAEVMAEGFPDRMKPDYKGAIEHLYENKRLGQKNGVGFYKYEMDKRGKP 601          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_ENT38 (Fatty acid oxidation complex subunit alpha OS=Enterobacter sp. (strain 638) GN=fadJ PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.815e-36
Identity = 83/234 (35.47%), Postives = 126/234 (53.85%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  +   + + AL ++ G +D+S FK  D+VIEAV E + LKQ++ +++E+ C PH I A+NTS++ +  +    +  +++IG HFFSP   MPL+E++  E TSAQ +  ++              +  GF VNR   PY   A  L++ G  V  +D A+  FG P+GP QLLD  G           + A+ +R F  P  +V  +L   R G+ NG+G Y Y  KG K
Sbjct:  360 VKRRHIKASERDRALALISGTIDFSGFKHRDVVIEAVFEDLQLKQQMVADVEQYCAPHTIFASNTSSLPIGDIAANAARPEQVIGLHFFSPVEKMPLVEVIPHESTSAQTVATVVKLAKRQGKTPIVVADKAGFYVNRILAPYINEAMRLLTEGEKVENVDDALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSPPANVVSAILNDDRKGRKNGRGFYLYAAKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHEAM (Fatty acid oxidation complex subunit alpha OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=fadB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.508e-36
Identity = 82/237 (34.60%), Postives = 127/237 (53.59%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTY--EKGSKP 747
            V RG+ T DK    L  +   LDY+  KDV++V+EAV+E+  +K  + +++E       I+A+NTSTI ++++ +   +  R  G HFF+P H MPL+E++R + TS + +  ++              +C GF VNR  FPY      L++ G D   ID  + + FG P+GP  LLD+ G              FPDR  +S    +D++ ++GR G+ NGKG Y Y  +K  KP
Sbjct:  363 VARGRSTPDKMAKVLNNITPALDYAPLKDVNVVVEAVVENPKVKAMVLADVENVVADDAIIASNTSTISIDLLAKSLKNPARFCGMHFFNPVHKMPLVEVIRGKDTSEETVASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLADGGDFAAIDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMADGFPDRMGKSDKDAIDVMYEAGRLGQKNGKGFYQYSIDKRGKP 599          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHESM (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain MR-4) GN=fadB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.110e-35
Identity = 80/234 (34.19%), Postives = 124/234 (52.99%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V RG+ T +K    L  +   LDY+  K  D+V+EAV+E   +K ++ +E+E+      I+A+NTSTI +N++ +     +R  G HFF+P H MPL+E++R E +S + I  ++              +C GF VNR  FPY      L++ G D   ID  + + FG P+GP  LLD+ G            + FPDR  +S    +D++ ++ R G+ NGKG Y Y   S+
Sbjct:  364 VARGRSTPEKMAKVLNNITPALDYAPVKHADVVVEAVVEHPKVKAQVLAEVEQYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRGEHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGNDAIDVMFENKRLGQKNGKGFYAYSVDSR 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHESA (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain ANA-3) GN=fadB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.110e-35
Identity = 80/234 (34.19%), Postives = 124/234 (52.99%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V RG+ T +K    L  +   LDY+  K  D+V+EAV+E   +K ++ +E+E+      I+A+NTSTI +N++ +     +R  G HFF+P H MPL+E++R E +S + I  ++              +C GF VNR  FPY      L++ G D   ID  + + FG P+GP  LLD+ G            + FPDR  +S    +D++ ++ R G+ NGKG Y Y   S+
Sbjct:  364 VARGRSTPEKMAKVLNNITPALDYAPVKHADVVVEAVVEHPKVKAQVLAEVEQYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRGEHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGNDAIDVMFENKRLGQKNGKGFYAYSVDSR 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: ECHP_DANRE (Peroxisomal bifunctional enzyme OS=Danio rerio GN=ehhadh PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.893e-35
Identity = 84/226 (37.17%), Postives = 120/226 (53.10%), Query Frame = 1
Query:   91 ALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGV-------AAATSKEFDKAFPDRSFQS----PLVDLLLKSGRNGKANGKGLYTYEK 735
            +L +LK  L   + KDVD+VIEAV E + LK++IF EL + C P  +L +NTS +D++ + + T     + G HFFSPAHVM LLE+V   R+S + I   M+             NC GF  NR   PY + A  L+  G    +ID A+  FG  +G F++ DLAG  V       +  T  + D   P R  Q     P+ D++ + GR G+  G+G Y Y+K
Sbjct:  354 SLNLLKFSLSLQDLKDVDLVIEAVFEDMALKKQIFRELSRVCRPATLLCSNTSGLDVDALADVTDRPQLVAGMHFFSPAHVMKLLEVVCGPRSSKEAIATAMSLGKRMGKVSVAVGNCPGFVGNRMLMPYLEQATFLLEEGATPQQIDKALEDFGFAMGVFRMSDLAGLDVGWRVRKESGLTGPDVDPKDPPRRRQGRKYCPIPDMVCQQGRFGQKTGRGWYMYDK 579          
The following BLAST results are available for this feature:
BLAST of CB293316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
FADB_PSEFS3.121e-3835.19Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEA76.953e-3835.59Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEMY1.186e-3734.75Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSEU51.311e-3633.91Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSYCK1.713e-3634.18Fatty acid oxidation complex subunit alpha OS=Psyc... [more]
FADJ_ENT383.815e-3635.47Fatty acid oxidation complex subunit alpha OS=Ente... [more]
FADB_SHEAM6.508e-3634.60Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SHESM1.110e-3534.19Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SHESA1.110e-3534.19Fatty acid oxidation complex subunit alpha OS=Shew... [more]
ECHP_DANRE1.893e-3537.17Peroxisomal bifunctional enzyme OS=Danio rerio GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05df09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05df09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293316 ID=CB293316; Name=CB293316; organism=Citrus sinensis; type=EST; length=749bp
GCCATTTAAGGGACAGGGATAAAAACAATAGAAGCAAATGTTCCATGATT
GGTAACAAGAGGAAAATTGACACAGGATAAAGCAAACAATGCCCTCAAAA
TGCTTAAAGGAGTGCTGGACTACTCAGAATTTAAAGATGTTGACATGGTC
ATAGAGGCAGTCATTGAAAGTGTTCCTCTGAAACAAAAAATATTCAGCGA
ACTAGAGAAAGCTTGCCCTCCTCACTGCATTTTGGCAACAAACACTTCTA
CTATTGACCTGAACATAGTTGGAGAAAAGACCAGCTCTCAGGATCGAATT
ATAGGGGCACATTTTTTCAGTCCTGCTCATGTGATGCCACTTTTGGAGAT
TGTTCGGACAGAGAGAACTTCTGCACAAGTAATTCTTGATCTCATGACAG
TCGGGAAAATCATAAAGAAAGTTCCTGTTGTGGTGGGTAACTGCACTGGC
TTTGCAGTCAATCGAGCGTTCTTCCCATATTCACAAAGTGCTCGCTTGCT
GGTTAGTTTAGGTGTGGATGTGTTCAGAATTGACAGTGCAATCAGAAGTT
TTGGCCTCCCCATCGGCCCTTTCCAGCTTCTGGACTTAGCAGGCTACGGA
GTCGCTGCTGCAACTTCAAAAGAATTTGACAAGGCATTCCCTGACCGTTC
ATTCCAGTCTCCTTTGGTTGATCTTTTGTTGAAAAGTGGACGAAATGGTA
AAGCCAATGGAAAAGGATTATATACATATGAAAAGGGAAGCAAGCCAAA
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