CB293316

Overview
NameCB293316
Unique NameCB293316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: HCDH_PIG (Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Sus scrofa GN=HADH PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.704e-23
Identity = 67/203 (33.00%), Postives = 105/203 (51.72%), Query Frame = 1
Query:  142 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIR-SFGLPIGPFQLLDLAGYGVAAATS---KEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYE 732
            D+V+EA++E++ +K ++F  L+K    H I A+NTS++ +  +   T+ QDR  G HFF+P  +M L+E+V+T  TS + +  L+              +  GF VNR   PY  ++ RL          ID+A++   G P+GPF+LLD  G            E D   P   FQ SP ++ L+   + GK  G+G Y Y+
Sbjct:  114 DLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIIDGWHEMDSQNP--LFQPSPAMNKLVAENKFGKKTGEGFYKYK 314          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: HBD_DEIRA (Probable 3-hydroxybutyryl-CoA dehydrogenase OS=Deinococcus radiodurans GN=hbd PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.528e-21
Identity = 68/241 (28.22%), Postives = 111/241 (46.06%), Query Frame = 1
Query:   16 GIKTIEANVP*LVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGL--PIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTY 729
            G   IE ++  L  +GKLT D     L  +    D  +F D D+V+EA++E+  +K  +F +L +   P  ILA+NTS+I +  +   +    + IG HF +P  +M L+E++R  +TS +    +               +  GF  NR   P    A   V  GV        I   G+  P+GP  L D  G     A  +   +   D  ++ SPL+  ++++G  G+ +G+G Y Y
Sbjct:   39 GKGVIEKSLGKLHEKGKLT-DAPETVLGRIHFTTDLQDFADCDLVVEAIVENQQIKNDLFKQLGQIVKPEGILASNTSSIPITALATASGRPAQFIGMHFMNPVPLMQLVEVIRGYQTSDETARIVTETAEKLGKTPLSCNDFPGFVSNRILMPMLNEAIQCVMEGVAEPEAIDGIMKLGMNHPMGPLTLADFIGLDTCLAIMEVLHQGLGDDKYRPSPLLRKMVQAGLLGRKSGEGFYKY 278          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: HBD_BRAJA (3-hydroxybutyryl-CoA dehydrogenase OS=Bradyrhizobium japonicum GN=hbdA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.484e-19
Identity = 67/248 (27.02%), Postives = 114/248 (45.97%), Query Frame = 1
Query:   13 TGIKTIEANVP*LVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYEKGSKP 747
            +G+ TI  N+   V++  +T++    AL  +       +  D D+VIE  +E   +K+KIF EL     P  I+A++TS+I +  +   T   +R IG HF +P  +M L+E++R   T                       +   F VNR   P    A   +  GV +V  ID+A++     P+GP +L D  G     +  +   +   D  ++  PL+   +++G  G+   +G Y Y +G+KP
Sbjct:   43 SGMATINGNLARQVSKKVVTEEAKTKALSRIVAAEKLDDLADCDLVIETAVEKEEVKRKIFHELCAVLKPEAIVASDTSSISITRLAAATDRPERFIGIHFMNPVPLMELVELIRGIATDDATFEASKEFVAKLGKQVAVSEDFPAFIVNRILLPMINEAIYTLYEGVGNVEAIDAAMKLGAHHPMGPLELADFIGLDTCLSIMQVLHEGLADSKYRPCPLLVKYVEAGWLGRKTQRGFYDY-RGAKP 289          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: HCDH_DEIRA (Probable 3-hydroxyacyl-CoA dehydrogenase OS=Deinococcus radiodurans GN=DR_2477 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.037e-13
Identity = 60/225 (26.67%), Postives = 99/225 (44.00%), Query Frame = 1
Query:  118 DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXN-CTGFAVNR-AFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIG-----PFQLLDLAGYGVAAATSKEFDKAFPD-------RSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            D  + KDVD V+EA+IE +  K  ++ ++EK      I+++N+S I   L I G     Q R +GAHFF+P   + LLE++ T++T  QV+ D                N   GF  NR   +   ++ + +   G+    +D      G  +G      F+  DL+G  + +  + +     PD        SF++     ++  G  G  +G G Y   K  K
Sbjct:   78 DLKKLKDVDWVLEAIIEKLDAKHDLWEKVEKVVKKTAIISSNSSGIPMHLQIEGRSEDFQRRFVGAHFFNPPRYLHLLEVIPTDKTDPQVVKDFSEFAEHTLGKGVVVANDVPGFVANRIGVYGIVRAMQHMEKYGLTPAEVDQLT---GPALGRASSATFRTADLSGLDIISHVATDIGGVTPDDEDFTLTESFKN-----MVAGGILGDKSGSGFYKKTKDEK 294          
The following BLAST results are available for this feature:
BLAST of CB293316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
HCDH_PIG3.704e-2333.00Hydroxyacyl-coenzyme A dehydrogenase, mitochondria... [more]
HBD_DEIRA4.528e-2128.22Probable 3-hydroxybutyryl-CoA dehydrogenase OS=Dei... [more]
HBD_BRAJA2.484e-1927.023-hydroxybutyryl-CoA dehydrogenase OS=Bradyrhizobi... [more]
HCDH_DEIRA2.037e-1326.67Probable 3-hydroxyacyl-CoA dehydrogenase OS=Deinoc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05df09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05df09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293316 ID=CB293316; Name=CB293316; organism=Citrus sinensis; type=EST; length=749bp
GCCATTTAAGGGACAGGGATAAAAACAATAGAAGCAAATGTTCCATGATT
GGTAACAAGAGGAAAATTGACACAGGATAAAGCAAACAATGCCCTCAAAA
TGCTTAAAGGAGTGCTGGACTACTCAGAATTTAAAGATGTTGACATGGTC
ATAGAGGCAGTCATTGAAAGTGTTCCTCTGAAACAAAAAATATTCAGCGA
ACTAGAGAAAGCTTGCCCTCCTCACTGCATTTTGGCAACAAACACTTCTA
CTATTGACCTGAACATAGTTGGAGAAAAGACCAGCTCTCAGGATCGAATT
ATAGGGGCACATTTTTTCAGTCCTGCTCATGTGATGCCACTTTTGGAGAT
TGTTCGGACAGAGAGAACTTCTGCACAAGTAATTCTTGATCTCATGACAG
TCGGGAAAATCATAAAGAAAGTTCCTGTTGTGGTGGGTAACTGCACTGGC
TTTGCAGTCAATCGAGCGTTCTTCCCATATTCACAAAGTGCTCGCTTGCT
GGTTAGTTTAGGTGTGGATGTGTTCAGAATTGACAGTGCAATCAGAAGTT
TTGGCCTCCCCATCGGCCCTTTCCAGCTTCTGGACTTAGCAGGCTACGGA
GTCGCTGCTGCAACTTCAAAAGAATTTGACAAGGCATTCCCTGACCGTTC
ATTCCAGTCTCCTTTGGTTGATCTTTTGTTGAAAAGTGGACGAAATGGTA
AAGCCAATGGAAAAGGATTATATACATATGAAAAGGGAAGCAAGCCAAA
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