CB293316
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: HCDH_PIG (Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Sus scrofa GN=HADH PE=1 SV=2) HSP 1 Score: 108.612 bits (270), Expect = 3.704e-23 Identity = 67/203 (33.00%), Postives = 105/203 (51.72%), Query Frame = 1 Query: 142 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIR-SFGLPIGPFQLLDLAGYGVAAATS---KEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYE 732 D+V+EA++E++ +K ++F L+K H I A+NTS++ + + T+ QDR G HFF+P +M L+E+V+T TS + + L+ + GF VNR PY ++ RL ID+A++ G P+GPF+LLD G E D P FQ SP ++ L+ + GK G+G Y Y+ Sbjct: 114 DLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIIDGWHEMDSQNP--LFQPSPAMNKLVAENKFGKKTGEGFYKYK 314
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: HBD_DEIRA (Probable 3-hydroxybutyryl-CoA dehydrogenase OS=Deinococcus radiodurans GN=hbd PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.528e-21 Identity = 68/241 (28.22%), Postives = 111/241 (46.06%), Query Frame = 1 Query: 16 GIKTIEANVP*LVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGL--PIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTY 729 G IE ++ L +GKLT D L + D +F D D+V+EA++E+ +K +F +L + P ILA+NTS+I + + + + IG HF +P +M L+E++R +TS + + + GF NR P A V GV I G+ P+GP L D G A + + D ++ SPL+ ++++G G+ +G+G Y Y Sbjct: 39 GKGVIEKSLGKLHEKGKLT-DAPETVLGRIHFTTDLQDFADCDLVVEAIVENQQIKNDLFKQLGQIVKPEGILASNTSSIPITALATASGRPAQFIGMHFMNPVPLMQLVEVIRGYQTSDETARIVTETAEKLGKTPLSCNDFPGFVSNRILMPMLNEAIQCVMEGVAEPEAIDGIMKLGMNHPMGPLTLADFIGLDTCLAIMEVLHQGLGDDKYRPSPLLRKMVQAGLLGRKSGEGFYKY 278
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: HBD_BRAJA (3-hydroxybutyryl-CoA dehydrogenase OS=Bradyrhizobium japonicum GN=hbdA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.484e-19 Identity = 67/248 (27.02%), Postives = 114/248 (45.97%), Query Frame = 1 Query: 13 TGIKTIEANVP*LVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYEKGSKP 747 +G+ TI N+ V++ +T++ AL + + D D+VIE +E +K+KIF EL P I+A++TS+I + + T +R IG HF +P +M L+E++R T + F VNR P A + GV +V ID+A++ P+GP +L D G + + + D ++ PL+ +++G G+ +G Y Y +G+KP Sbjct: 43 SGMATINGNLARQVSKKVVTEEAKTKALSRIVAAEKLDDLADCDLVIETAVEKEEVKRKIFHELCAVLKPEAIVASDTSSISITRLAAATDRPERFIGIHFMNPVPLMELVELIRGIATDDATFEASKEFVAKLGKQVAVSEDFPAFIVNRILLPMINEAIYTLYEGVGNVEAIDAAMKLGAHHPMGPLELADFIGLDTCLSIMQVLHEGLADSKYRPCPLLVKYVEAGWLGRKTQRGFYDY-RGAKP 289
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: HCDH_DEIRA (Probable 3-hydroxyacyl-CoA dehydrogenase OS=Deinococcus radiodurans GN=DR_2477 PE=1 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 2.037e-13 Identity = 60/225 (26.67%), Postives = 99/225 (44.00%), Query Frame = 1 Query: 118 DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXN-CTGFAVNR-AFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIG-----PFQLLDLAGYGVAAATSKEFDKAFPD-------RSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744 D + KDVD V+EA+IE + K ++ ++EK I+++N+S I L I G Q R +GAHFF+P + LLE++ T++T QV+ D N GF NR + ++ + + G+ +D G +G F+ DL+G + + + + PD SF++ ++ G G +G G Y K K Sbjct: 78 DLKKLKDVDWVLEAIIEKLDAKHDLWEKVEKVVKKTAIISSNSSGIPMHLQIEGRSEDFQRRFVGAHFFNPPRYLHLLEVIPTDKTDPQVVKDFSEFAEHTLGKGVVVANDVPGFVANRIGVYGIVRAMQHMEKYGLTPAEVDQLT---GPALGRASSATFRTADLSGLDIISHVATDIGGVTPDDEDFTLTESFKN-----MVAGGILGDKSGSGFYKKTKDEK 294 The following BLAST results are available for this feature:
BLAST of CB293316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 224
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Sequences
The
following sequences are available for this feature:
EST sequence >CB293316 ID=CB293316; Name=CB293316; organism=Citrus sinensis; type=EST; length=749bpback to top |