CB293316

Overview
NameCB293316
Unique NameCB293316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHEWM (Fatty acid oxidation complex subunit alpha OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=fadB PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.473e-35
Identity = 80/237 (33.76%), Postives = 123/237 (51.90%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQ--SPLVDLLLKSGRNGKANGKGLYTY--EKGSKP 747
            + RG+ T +K    L  +   LDY+  KDVD+V+EAV+E   +K  + +E+E+      I+ +NTSTI +N++ +     +R  G HFF+P H MPL+E++R E +S + I  ++              +C GF VNR  FPY      L++ G D   ID  + + FG P+GP  LLD+ G            + FPDR  +     +D++  S R G+ N KG Y Y  ++  KP
Sbjct:  364 IKRGRSTPEKMAKVLNNITATLDYAPVKDVDVVVEAVVEHPKVKSMVLAEVEQNVSDDAIITSNTSTISINLLAKSLKKPERFCGMHFFNPVHKMPLVEVIRGENSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSGLLADGADFAAIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAVMAEGFPDRMGKDGKDAIDIMFDSERFGQKNNKGFYAYSVDRRGKP 600          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHEB5 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadB PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.230e-35
Identity = 81/234 (34.62%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V RG+ T +K    L  +   LDY+  K  D+V+EAV+E   +K ++ +E+E       I+A+NTSTI +N++ +     +R  G HFF+P H MPL+EI+R E +S + I  ++              +C GF VNR  FPY      L++ G D   ID  + + FG P+GP  LLD+ G            + FPDR  +S    +D++ ++ R G+ NGKG Y Y   S+
Sbjct:  364 VARGRSTPEKMAKVLNNITPSLDYAAIKHSDVVVEAVVEHPKIKAQVLAEVEGYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEIIRGEHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGTDAIDVMFENKRLGQKNGKGFYVYSVDSR 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_PSYWF (Fatty acid oxidation complex subunit alpha OS=Psychrobacter sp. (strain PRwf-1) GN=fadB PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.230e-35
Identity = 77/234 (32.91%), Postives = 121/234 (51.71%), Query Frame = 1
Query:   49 LVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            +V R K+T  +    L  ++  L+Y +F + D+VIEAV+E+  +K  +  E+E     + ILA+NTSTI +  +       +  +G HFF+P H MPL+E++R E++S + I   +              +C GF VNR  FPY  +  LL+  G D   +D  +  FG P+GP  L+D+ G       ++   + FPDR        +  L ++ R G+ NG G Y YEK S+
Sbjct:  365 MVERKKMTPAQMGETLSRIRPTLNYGDFGETDIVIEAVVENPKVKHAVLKEVEGLVKDNAILASNTSTISITYLATVLERPENFVGMHFFNPVHRMPLVEVIRGEKSSEEAIATTVALAQRMGKVPVVVNDCPGFLVNRVLFPYFGAFDLLLKQGADFVHVDKVMEKFGWPMGPAYLIDVVGLDTGVHGAEVMAEGFPDRMKPDYKGAIKHLFENNRLGQKNGVGFYKYEKDSR 598          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_KLEP3 (Fatty acid oxidation complex subunit alpha OS=Klebsiella pneumoniae (strain 342) GN=fadJ PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.218e-35
Identity = 85/234 (36.32%), Postives = 121/234 (51.71%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTYE-KGSK 744
            V + +L   + +  + M+ G  DY  F   D+VIEAV E + LKQ++ SE+E+ C P  I A+NTS++ +  +  +     R+IG HFFSP   MPL+E++  + T  Q I  ++              +  GF VNR   PY   A  L+  G  V  ID A+  FG P+GP QLLD  G           + AF +R F SP  ++D +LK  R G+ N +G Y YE KG K
Sbjct:  360 VRQRRLRPSERDRQMAMISGATDYQGFAHRDVVIEAVFEDLALKQRMVSEVEQYCGPQTIFASNTSSLPIGDIAAQARRPGRVIGLHFFSPVEKMPLVEVIPHKGTDPQAIATVVQLAKRQGKTPIVVADKAGFYVNRILAPYINEAMRLLVEGEPVEEIDKALVKFGFPVGPIQLLDEVGIDTGTKIIPVLESAFGER-FSSPANIIDAILKDDRKGRKNNRGFYLYETKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHESW (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain W3-18-1) GN=fadB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.218e-35
Identity = 80/234 (34.19%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V RG+ T +K    L  +   LDY+  K  D+V+EAV+E   +K ++ +E+E       I+A+NTSTI +N++ +     +R  G HFF+P H MPL+E++R E +S + I  ++              +C GF VNR  FPY      L++ G D   ID  + + FG P+GP  LLD+ G            + FPDR  +S    +D++ ++ R G+ NGKG Y Y   S+
Sbjct:  364 VARGRSTPEKMAKVLNNITPSLDYAALKHSDVVVEAVVEHPKIKAQVLAEVEGYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRGEHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGTDAIDVMFENKRLGQKNGKGFYVYSVDSR 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHESR (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain MR-7) GN=fadB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.218e-35
Identity = 79/234 (33.76%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V RG+ T +K    L  +   LDY+     D+V+EAV+E   +K ++ +E+E+      I+A+NTSTI +N++ +     +R  G HFF+P H MPL+E++R E +S + I  ++              +C GF VNR  FPY      L++ G D   ID  + + FG P+GP  LLD+ G            + FPDR  +S    +D++ ++ R G+ NGKG Y Y   S+
Sbjct:  364 VARGRSTPEKMAKVLNNITPALDYAPVNHADVVVEAVVEHPKVKAQVLAEVEQYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRGEHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGNDAIDVMFENKRLGQKNGKGFYAYSVDSR 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHESH (Fatty acid oxidation complex subunit alpha OS=Shewanella sediminis (strain HAW-EB3) GN=fadB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.218e-35
Identity = 79/237 (33.33%), Postives = 124/237 (52.32%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTY--EKGSKP 747
            + RG+ T  K    L  +   LDY+  KDVD+V+EAV+E   +K  + +E+E+      I+ +NTSTI +N++ +     +R  G HFF+P H MPL+E++R E +S + I  ++              +C GF VNR  FPY      L++ G D   ID  + + FG P+GP  LLD+ G            + FPDR  ++    +D++ ++ R G+ N KG Y Y  ++  KP
Sbjct:  364 IKRGRSTPQKMAKVLNNITATLDYTPVKDVDVVVEAVVEHPKVKSMVLAEVEQNVSDDAIITSNTSTISINLLAKSLKKPERFCGMHFFNPVHKMPLVEVIRGENSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSGLLADGADFAAIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAVMAEGFPDRMGKNGKDAIDIMFEAERFGQKNSKGFYAYSVDRRGKP 600          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHEPC (Fatty acid oxidation complex subunit alpha OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.218e-35
Identity = 80/234 (34.19%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V RG+ T +K    L  +   LDY+  K  D+V+EAV+E   +K ++ +E+E       I+A+NTSTI +N++ +     +R  G HFF+P H MPL+E++R E +S + I  ++              +C GF VNR  FPY      L++ G D   ID  + + FG P+GP  LLD+ G            + FPDR  +S    +D++ ++ R G+ NGKG Y Y   S+
Sbjct:  364 VARGRSTPEKMAKVLNNITPSLDYAALKHSDVVVEAVVEHPKIKAQVLAEVEGYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRGEHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGTDAIDVMFENKRLGQKNGKGFYVYSVDSR 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHEB9 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS195) GN=fadB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.218e-35
Identity = 80/234 (34.19%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V RG+ T +K    L  +   LDY+  K  D+V+EAV+E   +K ++ +E+E       I+A+NTSTI +N++ +     +R  G HFF+P H MPL+E++R E +S + I  ++              +C GF VNR  FPY      L++ G D   ID  + + FG P+GP  LLD+ G            + FPDR  +S    +D++ ++ R G+ NGKG Y Y   S+
Sbjct:  364 VARGRSTPEKMAKVLNNITPSLDYAAIKHSDVVVEAVVEHPKIKAQVLAEVEGYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRGEHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGTDAIDVMFENKRLGQKNGKGFYVYSVDSR 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHEB8 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS185) GN=fadB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.218e-35
Identity = 80/234 (34.19%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V RG+ T +K    L  +   LDY+  K  D+V+EAV+E   +K ++ +E+E       I+A+NTSTI +N++ +     +R  G HFF+P H MPL+E++R E +S + I  ++              +C GF VNR  FPY      L++ G D   ID  + + FG P+GP  LLD+ G            + FPDR  +S    +D++ ++ R G+ NGKG Y Y   S+
Sbjct:  364 VARGRSTPEKMAKVLNNITPSLDYAAIKHSDVVVEAVVEHPKIKAQVLAEVEGYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRGEHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGTDAIDVMFENKRLGQKNGKGFYVYSVDSR 597          
The following BLAST results are available for this feature:
BLAST of CB293316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
FADB_SHEWM2.473e-3533.76Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SHEB53.230e-3534.62Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_PSYWF3.230e-3532.91Fatty acid oxidation complex subunit alpha OS=Psyc... [more]
FADJ_KLEP34.218e-3536.32Fatty acid oxidation complex subunit alpha OS=Kleb... [more]
FADB_SHESW4.218e-3534.19Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SHESR4.218e-3533.76Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SHESH4.218e-3533.33Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SHEPC4.218e-3534.19Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SHEB94.218e-3534.19Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SHEB84.218e-3534.19Fatty acid oxidation complex subunit alpha OS=Shew... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05df09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05df09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293316 ID=CB293316; Name=CB293316; organism=Citrus sinensis; type=EST; length=749bp
GCCATTTAAGGGACAGGGATAAAAACAATAGAAGCAAATGTTCCATGATT
GGTAACAAGAGGAAAATTGACACAGGATAAAGCAAACAATGCCCTCAAAA
TGCTTAAAGGAGTGCTGGACTACTCAGAATTTAAAGATGTTGACATGGTC
ATAGAGGCAGTCATTGAAAGTGTTCCTCTGAAACAAAAAATATTCAGCGA
ACTAGAGAAAGCTTGCCCTCCTCACTGCATTTTGGCAACAAACACTTCTA
CTATTGACCTGAACATAGTTGGAGAAAAGACCAGCTCTCAGGATCGAATT
ATAGGGGCACATTTTTTCAGTCCTGCTCATGTGATGCCACTTTTGGAGAT
TGTTCGGACAGAGAGAACTTCTGCACAAGTAATTCTTGATCTCATGACAG
TCGGGAAAATCATAAAGAAAGTTCCTGTTGTGGTGGGTAACTGCACTGGC
TTTGCAGTCAATCGAGCGTTCTTCCCATATTCACAAAGTGCTCGCTTGCT
GGTTAGTTTAGGTGTGGATGTGTTCAGAATTGACAGTGCAATCAGAAGTT
TTGGCCTCCCCATCGGCCCTTTCCAGCTTCTGGACTTAGCAGGCTACGGA
GTCGCTGCTGCAACTTCAAAAGAATTTGACAAGGCATTCCCTGACCGTTC
ATTCCAGTCTCCTTTGGTTGATCTTTTGTTGAAAAGTGGACGAAATGGTA
AAGCCAATGGAAAAGGATTATATACATATGAAAAGGGAAGCAAGCCAAA
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