CB293316

Overview
NameCB293316
Unique NameCB293316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHEB2 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS223) GN=fadB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.218e-35
Identity = 80/234 (34.19%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V RG+ T +K    L  +   LDY+  K  D+V+EAV+E   +K ++ +E+E       I+A+NTSTI +N++ +     +R  G HFF+P H MPL+E++R E +S + I  ++              +C GF VNR  FPY      L++ G D   ID  + + FG P+GP  LLD+ G            + FPDR  +S    +D++ ++ R G+ NGKG Y Y   S+
Sbjct:  364 VARGRSTPEKMAKVLNNITPSLDYAAIKHSDVVVEAVVEHPKIKAQVLAEVEGYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRGEHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGTDAIDVMFENKRLGQKNGKGFYVYSVDSR 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_ACIBS (Fatty acid oxidation complex subunit alpha OS=Acinetobacter baumannii (strain SDF) GN=fadB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.397e-35
Identity = 79/233 (33.91%), Postives = 123/233 (52.79%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V R K+   +    L  ++  L Y EFK+VD+VIEAV E+  +K+ + +E EK    + I+A+NTSTI +  + +     +  +G HFF+P H+MPL+E++R E+TS + I   +              +C GF VNR  FPY  +  LLV  G D  +ID+ +  FG P+GP  L+D+ G       ++   + FPDR        ++ + ++ R G+ N  G Y YE   K
Sbjct:  366 VERKKMKPAQMGETLARIRPTLSYEEFKEVDIVIEAVTENPKVKEIVLAETEKNVRENTIIASNTSTISITRLAKALQRPENFVGMHFFNPVHMMPLVEVIRGEKTSEEAIATTVVLAQKMGKTPIVVNDCPGFLVNRVLFPYFGAFDLLVKDGADFQQIDNVMSKFGWPMGPAYLIDVVGIDTGVHGAEVMAEGFPDRMKPDYKGAIEAMYEAKRLGQKNDVGFYKYELDKK 598          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_ACIBC (Fatty acid oxidation complex subunit alpha OS=Acinetobacter baumannii (strain ACICU) GN=fadB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.397e-35
Identity = 79/233 (33.91%), Postives = 123/233 (52.79%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V R K+   +    L  ++  L Y EFK+VD+VIEAV E+  +K+ + +E EK    + I+A+NTSTI +  + +     +  +G HFF+P H+MPL+E++R E+TS + I   +              +C GF VNR  FPY  +  LLV  G D  +ID+ +  FG P+GP  L+D+ G       ++   + FPDR        ++ + ++ R G+ N  G Y YE   K
Sbjct:  366 VERKKMKPAQMGETLARIRPTLSYEEFKEVDIVIEAVTENPKVKEIVLAETEKNVRENTIIASNTSTISITRLAKALQRPENFVGMHFFNPVHMMPLVEVIRGEKTSEEAIATTVVLAQKMGKTPIVVNDCPGFLVNRVLFPYFGAFDLLVKDGADFQQIDNVMSKFGWPMGPAYLIDVVGIDTGVHGAEVMAEGFPDRMKPDYKGAIEAMYEAKRLGQKNDVGFYKYELDKK 598          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHEON (Fatty acid oxidation complex subunit alpha OS=Shewanella oneidensis GN=fadB PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.227e-34
Identity = 78/234 (33.33%), Postives = 124/234 (52.99%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V RG+ T +K    L  +   L+Y+  K  D+V+EAV+E   +K ++ +E+E+      I+A+NTSTI ++++ +     +R  G HFF+P H MPL+E++R E +S + I  ++              +C GF VNR  FPY      L++ G D   ID  + + FG P+GP  LLD+ G            + FPDR  +S    +D++ ++ R G+ NGKG Y Y   S+
Sbjct:  364 VARGRSTPEKMAKVLNNITPALEYAPVKHADVVVEAVVEHPKVKAQVLAEVEQYVSEDAIIASNTSTISISLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRGEHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGNDAIDVMFENKRLGQKNGKGFYAYSVDSR 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_ACIBY (Fatty acid oxidation complex subunit alpha OS=Acinetobacter baumannii (strain AYE) GN=fadB PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.227e-34
Identity = 79/233 (33.91%), Postives = 123/233 (52.79%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V R K+   +    L  ++  L Y EFK+VD+VIEAV E+  +K+ + +E EK    + I+A+NTSTI +  + +     +  +G HFF+P H+MPL+E++R E+TS + I   +              +C GF VNR  FPY  +  LLV  G D  +ID+ +  FG P+GP  L+D+ G       ++   + FPDR        ++ + ++ R G+ N  G Y YE   K
Sbjct:  366 VERKKMKPVQMGETLARIRPTLSYEEFKEVDIVIEAVTENPKVKEIVLAETEKNVRENTIIASNTSTISITRLAKALQRPENFVGMHFFNPVHMMPLVEVIRGEKTSEEAIATTVVLAQKMGKTPIVVNDCPGFLVNRVLFPYFGAFDLLVKDGADFQQIDNVMSKFGWPMGPAYLIDVVGIDTGVHGAEVMAEGFPDRMKPDYKGAIEAMYEAKRLGQKNDVGFYKYELDKK 598          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_ACIB5 (Fatty acid oxidation complex subunit alpha OS=Acinetobacter baumannii (strain AB0057) GN=fadB PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.227e-34
Identity = 79/233 (33.91%), Postives = 123/233 (52.79%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V R K+   +    L  ++  L Y EFK+VD+VIEAV E+  +K+ + +E EK    + I+A+NTSTI +  + +     +  +G HFF+P H+MPL+E++R E+TS + I   +              +C GF VNR  FPY  +  LLV  G D  +ID+ +  FG P+GP  L+D+ G       ++   + FPDR        ++ + ++ R G+ N  G Y YE   K
Sbjct:  366 VERKKMKPVQMGETLARIRPTLSYEEFKEVDIVIEAVTENPKVKEIVLAETEKNVRENTIIASNTSTISITRLAKALQRPENFVGMHFFNPVHMMPLVEVIRGEKTSEEAIATTVVLAQKMGKTPIVVNDCPGFLVNRVLFPYFGAFDLLVKDGADFQQIDNVMSKFGWPMGPAYLIDVVGIDTGVHGAEVMAEGFPDRMKPDYKGAIEAMYEAKRLGQKNDVGFYKYELDKK 598          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_ACIB3 (Fatty acid oxidation complex subunit alpha OS=Acinetobacter baumannii (strain AB307-0294) GN=fadB PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.227e-34
Identity = 79/233 (33.91%), Postives = 123/233 (52.79%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V R K+   +    L  ++  L Y EFK+VD+VIEAV E+  +K+ + +E EK    + I+A+NTSTI +  + +     +  +G HFF+P H+MPL+E++R E+TS + I   +              +C GF VNR  FPY  +  LLV  G D  +ID+ +  FG P+GP  L+D+ G       ++   + FPDR        ++ + ++ R G+ N  G Y YE   K
Sbjct:  366 VERKKMKPVQMGETLARIRPTLSYEEFKEVDIVIEAVTENPKVKEIVLAETEKNVRENTIIASNTSTISITRLAKALQRPENFVGMHFFNPVHMMPLVEVIRGEKTSEEAIATTVVLAQKMGKTPIVVNDCPGFLVNRVLFPYFGAFDLLVKDGADFQQIDNVMSKFGWPMGPAYLIDVVGIDTGVHGAEVMAEGFPDRMKPDYKGAIEAMYEAKRLGQKNDVGFYKYELDKK 598          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_ACIAD (Fatty acid oxidation complex subunit alpha OS=Acinetobacter sp. (strain ADP1) GN=fadB PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.227e-34
Identity = 78/233 (33.48%), Postives = 121/233 (51.93%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V R KLT  K    L  ++  L Y EFK+VD+VIEAV E+  +K+ + ++ E     + I+A+NTSTI +  + +     +  +G HFF+P H+MPL+E++R E+TS + +   +              +C GF VNR  FPY  +  LL+  G D  +ID  +  FG P+GP  L+D+ G       ++   + FPDR        +  + ++ R G+ N  G Y YE   K
Sbjct:  366 VERKKLTPAKMGETLARIRPTLSYDEFKEVDIVIEAVTENPKIKEAVLADTEAKVRDNTIIASNTSTISITRLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEQTSEEAVATTVVLAQKMGKTPIVVNDCPGFLVNRVLFPYFGAFDLLLKDGADFQQIDKVMEKFGWPMGPAYLMDVVGIDTGVHGAEVMAEGFPDRMKPDYKGSIQTMYEAKRLGQKNDVGFYKYELDKK 598          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SALDC (Fatty acid oxidation complex subunit alpha OS=Salmonella dublin (strain CT_02021853) GN=fadJ PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.093e-34
Identity = 83/234 (35.47%), Postives = 124/234 (52.99%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  +  ++ +  L ++ G  DY  F   D+VIEAV E +PLKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+E++    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y EKG K
Sbjct:  360 VRRRHIKANERDKQLALISGSTDYRGFSHRDLVIEAVFEDLPLKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAANAARPEQVIGLHFFSPVEKMPLVEVIPHASTSAQTIATTVKLAKKQGKTPIVVSDKAGFYVNRILVPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVASILNDDRKGRKNGRGFYLYGEKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SALG2 (Fatty acid oxidation complex subunit alpha OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=fadJ PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.734e-34
Identity = 83/234 (35.47%), Postives = 124/234 (52.99%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  +  ++ +  L ++ G  DY  F   D+VIEAV E +PLKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+E++    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y EKG K
Sbjct:  360 VRRRHIKANERDKQLALISGSTDYRGFSHRDLVIEAVFEDLPLKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAANAARPEQVIGLHFFSPVEKMPLVEVIPHASTSAQTIATTVKLAKKQGKTPIVVSDKAGFYVNRILAPYINKAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVASILNDDRKGRKNGRGFYLYGEKGRK 592          
The following BLAST results are available for this feature:
BLAST of CB293316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
FADB_SHEB24.218e-3534.19Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_ACIBS9.397e-3533.91Fatty acid oxidation complex subunit alpha OS=Acin... [more]
FADB_ACIBC9.397e-3533.91Fatty acid oxidation complex subunit alpha OS=Acin... [more]
FADB_SHEON1.227e-3433.33Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_ACIBY1.227e-3433.91Fatty acid oxidation complex subunit alpha OS=Acin... [more]
FADB_ACIB51.227e-3433.91Fatty acid oxidation complex subunit alpha OS=Acin... [more]
FADB_ACIB31.227e-3433.91Fatty acid oxidation complex subunit alpha OS=Acin... [more]
FADB_ACIAD1.227e-3433.48Fatty acid oxidation complex subunit alpha OS=Acin... [more]
FADJ_SALDC2.093e-3435.47Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALG22.734e-3435.47Fatty acid oxidation complex subunit alpha OS=Salm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05df09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05df09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293316 ID=CB293316; Name=CB293316; organism=Citrus sinensis; type=EST; length=749bp
GCCATTTAAGGGACAGGGATAAAAACAATAGAAGCAAATGTTCCATGATT
GGTAACAAGAGGAAAATTGACACAGGATAAAGCAAACAATGCCCTCAAAA
TGCTTAAAGGAGTGCTGGACTACTCAGAATTTAAAGATGTTGACATGGTC
ATAGAGGCAGTCATTGAAAGTGTTCCTCTGAAACAAAAAATATTCAGCGA
ACTAGAGAAAGCTTGCCCTCCTCACTGCATTTTGGCAACAAACACTTCTA
CTATTGACCTGAACATAGTTGGAGAAAAGACCAGCTCTCAGGATCGAATT
ATAGGGGCACATTTTTTCAGTCCTGCTCATGTGATGCCACTTTTGGAGAT
TGTTCGGACAGAGAGAACTTCTGCACAAGTAATTCTTGATCTCATGACAG
TCGGGAAAATCATAAAGAAAGTTCCTGTTGTGGTGGGTAACTGCACTGGC
TTTGCAGTCAATCGAGCGTTCTTCCCATATTCACAAAGTGCTCGCTTGCT
GGTTAGTTTAGGTGTGGATGTGTTCAGAATTGACAGTGCAATCAGAAGTT
TTGGCCTCCCCATCGGCCCTTTCCAGCTTCTGGACTTAGCAGGCTACGGA
GTCGCTGCTGCAACTTCAAAAGAATTTGACAAGGCATTCCCTGACCGTTC
ATTCCAGTCTCCTTTGGTTGATCTTTTGTTGAAAAGTGGACGAAATGGTA
AAGCCAATGGAAAAGGATTATATACATATGAAAAGGGAAGCAAGCCAAA
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