CB293316

Overview
NameCB293316
Unique NameCB293316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SALEP (Fatty acid oxidation complex subunit alpha OS=Salmonella enteritidis PT4 (strain P125109) GN=fadJ PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.734e-34
Identity = 83/234 (35.47%), Postives = 124/234 (52.99%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  +  ++ +  L ++ G  DY  F   D+VIEAV E +PLKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+E++    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y EKG K
Sbjct:  360 VRRRHIKANERDKQLALISGSTDYRGFSHRDLVIEAVFEDLPLKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAANAARPEQVIGLHFFSPVEKMPLVEVIPHASTSAQTIATTVKLAKKQGKTPIVVSDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVASILNDDRKGRKNGRGFYLYGEKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_PECCP (Fatty acid oxidation complex subunit alpha OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=fadJ PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.734e-34
Identity = 77/228 (33.77%), Postives = 114/228 (50.00%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEK 735
            V R ++   +    + ++ G  DY  F+  D+VIEAV E + LK+++ +E+E    PH I A+NTS++ ++ + E      ++IG H+FSP   MPL+E++    TSA+ +   +              +  GF VNR   PY   A   +  G  +  ID A+  FG P+GPF LLD  G  VA        +    R    P  D +LK GR G+ NGKG Y Y K
Sbjct:  370 VQRKRMKPTERQRLMTLISGSTDYRGFEHADIVIEAVFEDLALKRQMVAEIEDHAAPHTIFASNTSSLPIHQIAEGARRPQQVIGLHYFSPVDKMPLVEVIPHAHTSAETVATTVALARKQGKTAIVVGDSAGFYVNRILAPYINEAAYCLLEGEPIESIDYALVRFGFPVGPFALLDEVGIDVATKIVPVLSEELGTRFTSPPAFDAILKDGRKGRKNGKGFYRYNK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHELP (Fatty acid oxidation complex subunit alpha OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.734e-34
Identity = 77/237 (32.49%), Postives = 121/237 (51.05%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQ--SPLVDLLLKSGRNGKANGKGLYTY--EKGSKP 747
            + RG+ T  K    L  +   LDY+  K  D+V+EAV+E   +K  + +E+E+      I+ +NTSTI +N++ +     +R  G HFF+P H MPL+E++R E +S + +  ++              +C GF VNR  FPY      L+  G D   ID  + + FG P+GP  LLD+ G            + FPDR  +     +D++ ++ R G+ NGKG Y Y  ++  KP
Sbjct:  364 INRGRSTPAKMAGVLNNITATLDYNALKQADVVVEAVVEHPKVKATVLAEVEQVVGEDAIITSNTSTISINLLAKSLQKPERFCGMHFFNPVHKMPLVEVIRGEHSSEETVASVVAYAAKMGKTPIVVNDCPGFFVNRVLFPYFAGFSGLLEDGADFAAIDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMAKEGKDAIDVMFEADRFGQKNGKGFYQYSVDRRGKP 600          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SALTY (Fatty acid oxidation complex subunit alpha OS=Salmonella typhimurium GN=fadJ PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 83/234 (35.47%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  +   + +  L ++ G  DY  F   D+VIEAV E +PLKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+E++    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y EKG K
Sbjct:  360 VRRRHIKASERDKQLALISGSTDYRGFSHRDLVIEAVFEDLPLKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAANAARPEQVIGLHFFSPVEKMPLVEVIPHASTSAQTIATTVKLAKKQGKTPIVVSDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVASILNDDRKGRKNGRGFYLYGEKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SALTI (Fatty acid oxidation complex subunit alpha OS=Salmonella typhi GN=fadJ PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 83/234 (35.47%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  +   + +  L ++ G  DY  F   D+VIEAV E +PLKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+E++    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y EKG K
Sbjct:  360 VRRRHIKASERDKQLALISGSTDYRGFSHRDLVIEAVFEDLPLKQQMVAEVEQNCATHTIFASNTSSLPIGDIAANAARPEQVIGLHFFSPVEKMPLVEVIPHASTSAQTIATTVKLAKKQGKTPIVVSDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVASILNDDRKGRKNGRGFYLYGEKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SALSV (Fatty acid oxidation complex subunit alpha OS=Salmonella schwarzengrund (strain CVM19633) GN=fadJ PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 83/234 (35.47%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  +   + +  L ++ G  DY  F   D+VIEAV E +PLKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+E++    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y EKG K
Sbjct:  360 VRRRHIKASERDKQLALISGSTDYRGFSHRDLVIEAVFEDLPLKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAANAARPEQVIGLHFFSPVEKMPLVEVIPHASTSAQTIATTVKLAKKQGKTPIVVSDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVASILNDDRKGRKNGRGFYLYGEKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SALPK (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi A (strain AKU_12601) GN=fadJ PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 83/234 (35.47%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  +   + +  L ++ G  DY  F   D+VIEAV E +PLKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+E++    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y EKG K
Sbjct:  360 VRRRHIKASERDKQLALISGSTDYRGFSHRDLVIEAVFEDLPLKQQMVAEVEQNCATHTIFASNTSSLPIGDIAANAARPEQVIGLHFFSPVEKMPLVEVIPHASTSAQTIATTVKLAKKQGKTPIVVSDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVASILNDDRKGRKNGRGFYLYGEKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SALPB (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fadJ PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 83/234 (35.47%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  +   + +  L ++ G  DY  F   D+VIEAV E +PLKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+E++    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y EKG K
Sbjct:  360 VRRRHIKASERDKQLALISGSTDYRGFSHRDLVIEAVFEDLPLKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAANAARPEQVIGLHFFSPVEKMPLVEVIPHASTSAQTIATTVKLAKKQGKTPIVVSDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVASILNDDRKGRKNGRGFYLYGEKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SALPA (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi A GN=fadJ PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 83/234 (35.47%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  +   + +  L ++ G  DY  F   D+VIEAV E +PLKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+E++    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y EKG K
Sbjct:  360 VRRRHIKASERDKQLALISGSTDYRGFSHRDLVIEAVFEDLPLKQQMVAEVEQNCATHTIFASNTSSLPIGDIAANAARPEQVIGLHFFSPVEKMPLVEVIPHASTSAQTIATTVKLAKKQGKTPIVVSDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVASILNDDRKGRKNGRGFYLYGEKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SALNS (Fatty acid oxidation complex subunit alpha OS=Salmonella newport (strain SL254) GN=fadJ PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 83/234 (35.47%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  +   + +  L ++ G  DY  F   D+VIEAV E +PLKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+E++    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y EKG K
Sbjct:  360 VRRRHIKASERDKQLALISGSTDYRGFSHRDLVIEAVFEDLPLKQQMVAEVEQNCATHTIFASNTSSLPIGDIAANAARPEQVIGLHFFSPVEKMPLVEVIPHASTSAQTIATTVKLAKKQGKTPIVVSDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVASILNDDRKGRKNGRGFYLYGEKGRK 592          
The following BLAST results are available for this feature:
BLAST of CB293316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
FADJ_SALEP2.734e-3435.47Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_PECCP2.734e-3433.77Fatty acid oxidation complex subunit alpha OS=Pect... [more]
FADB_SHELP2.734e-3432.49Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SALTY3.571e-3435.47Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALTI3.571e-3435.47Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALSV3.571e-3435.47Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALPK3.571e-3435.47Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALPB3.571e-3435.47Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALPA3.571e-3435.47Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALNS3.571e-3435.47Fatty acid oxidation complex subunit alpha OS=Salm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05df09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05df09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293316 ID=CB293316; Name=CB293316; organism=Citrus sinensis; type=EST; length=749bp
GCCATTTAAGGGACAGGGATAAAAACAATAGAAGCAAATGTTCCATGATT
GGTAACAAGAGGAAAATTGACACAGGATAAAGCAAACAATGCCCTCAAAA
TGCTTAAAGGAGTGCTGGACTACTCAGAATTTAAAGATGTTGACATGGTC
ATAGAGGCAGTCATTGAAAGTGTTCCTCTGAAACAAAAAATATTCAGCGA
ACTAGAGAAAGCTTGCCCTCCTCACTGCATTTTGGCAACAAACACTTCTA
CTATTGACCTGAACATAGTTGGAGAAAAGACCAGCTCTCAGGATCGAATT
ATAGGGGCACATTTTTTCAGTCCTGCTCATGTGATGCCACTTTTGGAGAT
TGTTCGGACAGAGAGAACTTCTGCACAAGTAATTCTTGATCTCATGACAG
TCGGGAAAATCATAAAGAAAGTTCCTGTTGTGGTGGGTAACTGCACTGGC
TTTGCAGTCAATCGAGCGTTCTTCCCATATTCACAAAGTGCTCGCTTGCT
GGTTAGTTTAGGTGTGGATGTGTTCAGAATTGACAGTGCAATCAGAAGTT
TTGGCCTCCCCATCGGCCCTTTCCAGCTTCTGGACTTAGCAGGCTACGGA
GTCGCTGCTGCAACTTCAAAAGAATTTGACAAGGCATTCCCTGACCGTTC
ATTCCAGTCTCCTTTGGTTGATCTTTTGTTGAAAAGTGGACGAAATGGTA
AAGCCAATGGAAAAGGATTATATACATATGAAAAGGGAAGCAAGCCAAA
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