CB293316

Overview
NameCB293316
Unique NameCB293316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SALHS (Fatty acid oxidation complex subunit alpha OS=Salmonella heidelberg (strain SL476) GN=fadJ PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 83/234 (35.47%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  +   + +  L ++ G  DY  F   D+VIEAV E +PLKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+E++    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y EKG K
Sbjct:  360 VRRRHIKASERDKQLALISGSTDYRGFSHRDLVIEAVFEDLPLKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAANAARPEQVIGLHFFSPVEKMPLVEVIPHASTSAQTIATTVKLAKKQGKTPIVVSDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVASILNDDRKGRKNGRGFYLYGEKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SALCH (Fatty acid oxidation complex subunit alpha OS=Salmonella choleraesuis GN=fadJ PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 83/234 (35.47%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  +   + +  L ++ G  DY  F   D+VIEAV E +PLKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+E++    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y EKG K
Sbjct:  360 VRRRHIKASERDKQLALISGSTDYRGFSHRDLVIEAVFEDLPLKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAANAARPEQVIGLHFFSPVEKMPLVEVIPHASTSAQTIATTVKLAKKQGKTPIVVSDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVASILNDDRKGRKNGRGFYLYGEKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SALA4 (Fatty acid oxidation complex subunit alpha OS=Salmonella agona (strain SL483) GN=fadJ PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.571e-34
Identity = 83/234 (35.47%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  +   + +  L ++ G  DY  F   D+VIEAV E +PLKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+E++    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y EKG K
Sbjct:  360 VRRRHIKASERDKQLALISGSTDYRGFSHRDLVIEAVFEDLPLKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAANAARPEQVIGLHFFSPVEKMPLVEVIPHASTSAQTIATTVKLAKKQGKTPIVVSDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVASILNDDRKGRKNGRGFYLYGEKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_VIBFM (Fatty acid oxidation complex subunit alpha OS=Vibrio fischeri (strain MJ11) GN=fadB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.664e-34
Identity = 80/235 (34.04%), Postives = 127/235 (54.04%), Query Frame = 1
Query:   58 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTY--EKGSKP 747
            RG+L+  K    L  +   L+Y+  ++ D+V+EAV+E+  +K  + +E+E     H ILA+NTSTI ++++ +     +   G HFF+P H MPL+E++R E+TS Q I  ++              +C GF VNR  FPY     LL+  G D  +ID  + + FG P+GP  LLD+ G   A        + FP+R  ++   ++D + +S R G+ NG G Y Y  ++  KP
Sbjct:  366 RGRLSGLKMAQVLSSITPSLNYASIENKDIVVEAVVENPKIKAAVLAEVENEVNEHAILASNTSTIPISLLAKSLKRPENFCGMHFFNPVHRMPLVEVIRGEKTSQQTIDRVVAYASQMGKTPIVVNDCPGFFVNRVLFPYFAGFSLLLRDGGDYQQIDKVMEKEFGWPMGPAYLLDVVGIDTAHHAQAVMAQGFPERMAKNGRDVIDAMFESDRYGQKNGSGFYAYSIDRKGKP 600          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_VIBF1 (Fatty acid oxidation complex subunit alpha OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.664e-34
Identity = 80/235 (34.04%), Postives = 128/235 (54.47%), Query Frame = 1
Query:   58 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTY--EKGSKP 747
            RG+L+  K    L  +   L+Y+  ++ D+V+EAV+E+  +K  + +E+E     H ILA+NTSTI ++++ +     +   G HFF+P H MPL+E++R E+TS Q I  ++              +C GF VNR  FPY     LL+  G D  +ID+ + + FG P+GP  LLD+ G   A        + FP+R  ++   ++D + +S R G+ NG G Y Y  ++  KP
Sbjct:  366 RGRLSGLKMAKVLSSITPSLNYASIENKDIVVEAVVENPKVKAAVLAEVENEVNEHAILASNTSTIPISLLAKSLKRPENFCGMHFFNPVHRMPLVEVIRGEKTSQQTIDRVVAYASQMGKTPIVINDCPGFFVNRVLFPYFAGFSLLLRDGGDYQQIDNVMEKEFGWPMGPAYLLDVVGIDTAHHAQAVMAQGFPERMAKNGRDVIDAMFESDRYGQKNGSGFYAYSIDRKGKP 600          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHEHH (Fatty acid oxidation complex subunit alpha OS=Shewanella halifaxensis (strain HAW-EB4) GN=fadB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.091e-34
Identity = 76/229 (33.19%), Postives = 119/229 (51.97%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTY 729
            V RG+ T  K    L  +   LDY+  KD D+++EAV+E   +K  + +E+E+      I+ +NTSTI +N++ +     +R  G HFF+P H MPL+E++R E +S + +  ++              +C GF VNR  FPY      L++ G D   ID  + + FG P+GP  LLD+ G            + FPDR  +S    +D++ ++ R G+ N KG Y Y
Sbjct:  364 VKRGRSTPAKMATVLNNITPALDYAPVKDTDIIVEAVVEHPKVKSMVLAEVEEHVSEDAIITSNTSTISINLLAKSLKKPERFCGMHFFNPVHKMPLVEVIRGENSSDETVASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSGLLADGADFAAIDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGKDAIDVMFEAERFGQKNNKGFYQY 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_ENTS8 (Fatty acid oxidation complex subunit alpha OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fadB PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.955e-34
Identity = 79/232 (34.05%), Postives = 121/232 (52.16%), Query Frame = 1
Query:   58 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            RGK+   K    +  +   LDY+ F+  D+V+EAV+E+  +K+ + +E E+   P  ++A+NTSTI ++ +       +   G HFF+P H MPL+E++R E+TS   I  +++             +C GF VNR  FPY      L+  G D  +ID  + + FG P+GP  LLD+ G   A          FP R  +     +D L  +GR G+ NGKG Y Y++ SK
Sbjct:  366 RGKIDGLKLAGVIATIHPTLDYAGFERADVVVEAVVENPKVKKAVLAETEEKVRPDTVIASNTSTIPISELASVLKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDATIAKVVSWASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDALFDAGRFGQKNGKGFYAYQEDSK 597          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHEFN (Fatty acid oxidation complex subunit alpha OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.039e-33
Identity = 79/237 (33.33%), Postives = 124/237 (52.32%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTY--EKGSKP 747
            V RG+ T +K    L  +   LDY+  K+ D+V+EAV+E   +K  + +E+E       I+A+NTSTI +N++ +     +R  G HFF+P H MPL+EI+R E +S + I  ++              +C GF VNR  FPY      L++ G D   +D  + + FG P+GP  LLD+ G            + FPDR  ++    +D++ ++ R G+ N KG Y Y  ++  KP
Sbjct:  364 VARGRSTPEKMAKVLNNITPSLDYAAIKNSDIVVEAVVEHPKVKATVLAEVEGYVSEDAIIASNTSTISINLLAKSLKKPERFCGMHFFNPVHKMPLVEIIRGEHSSEETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSGLLAEGADFAAVDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKNGKDAIDIMFENKRLGQKNTKGFYAYSVDRRGKP 600          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SHEAM (Fatty acid oxidation complex subunit alpha OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=fadJ PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.357e-33
Identity = 76/231 (32.90%), Postives = 115/231 (49.78%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK 744
            V R  +T  + +  + ++    +Y   KD D+V+EAV E + LK ++  ++E+ C  H I A+NTS++ +  +    S  + +IG H+FSP   MPL+E++  E+TS + I   +              +C GF VNR    Y   A  L+  G  V  +D A+  FG P+GP  LLD  G  V A  S   +K   +R       D L+   R G+ NGKG Y Y K +K
Sbjct:  362 VKRRHMTSAERDKLMALMTTTTEYRGVKDADIVVEAVFEDLNLKHQMVRDIERECGEHTIFASNTSSLPITQIAAAASRPENVIGLHYFSPVEKMPLVEVIAHEKTSPETIATTVAFARKQGKTPIVVKDCAGFYVNRILALYMNEAAQLLLEGQAVDHLDKALVKFGFPVGPMTLLDEVGIDVGAKISPILEKELGERFKAPAAFDKLMADDRKGRKNGKGFYLYGKAAK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADB_SHEPA (Fatty acid oxidation complex subunit alpha OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=fadB PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.357e-33
Identity = 78/237 (32.91%), Postives = 123/237 (51.90%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTY--EKGSKP 747
            V RG+ T  K    L  +   LDY+  KD D+V+EAV+E   +K  + +E+E+      I+ +NTSTI +N++ +     +R  G HFF+P H MPL+E++R E +S + +  ++              +C GF VNR  FPY      L++ G D   ID  + + FG P+GP  LLD+ G            + FPDR  ++    +D++ ++ R G+ N KG Y Y  ++  KP
Sbjct:  364 VKRGRSTPAKMAAVLNNITPALDYAPVKDADVVVEAVVEHPKVKSMVLAEVEQHVSEDAIITSNTSTISINLLAKSLKKPERFCGMHFFNPVHKMPLVEVIRGENSSDETVASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSGLLADGADFAAIDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKTGKDAIDVMFEAERFGQKNSKGFYQYSVDRRGKP 600          
The following BLAST results are available for this feature:
BLAST of CB293316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
FADJ_SALHS3.571e-3435.47Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALCH3.571e-3435.47Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALA43.571e-3435.47Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADB_VIBFM4.664e-3434.04Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADB_VIBF14.664e-3434.04Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADB_SHEHH6.091e-3433.19Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_ENTS87.955e-3434.05Fatty acid oxidation complex subunit alpha OS=Ente... [more]
FADB_SHEFN1.039e-3333.33Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SHEAM1.357e-3332.90Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SHEPA1.357e-3332.91Fatty acid oxidation complex subunit alpha OS=Shew... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05df09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05df09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293316 ID=CB293316; Name=CB293316; organism=Citrus sinensis; type=EST; length=749bp
GCCATTTAAGGGACAGGGATAAAAACAATAGAAGCAAATGTTCCATGATT
GGTAACAAGAGGAAAATTGACACAGGATAAAGCAAACAATGCCCTCAAAA
TGCTTAAAGGAGTGCTGGACTACTCAGAATTTAAAGATGTTGACATGGTC
ATAGAGGCAGTCATTGAAAGTGTTCCTCTGAAACAAAAAATATTCAGCGA
ACTAGAGAAAGCTTGCCCTCCTCACTGCATTTTGGCAACAAACACTTCTA
CTATTGACCTGAACATAGTTGGAGAAAAGACCAGCTCTCAGGATCGAATT
ATAGGGGCACATTTTTTCAGTCCTGCTCATGTGATGCCACTTTTGGAGAT
TGTTCGGACAGAGAGAACTTCTGCACAAGTAATTCTTGATCTCATGACAG
TCGGGAAAATCATAAAGAAAGTTCCTGTTGTGGTGGGTAACTGCACTGGC
TTTGCAGTCAATCGAGCGTTCTTCCCATATTCACAAAGTGCTCGCTTGCT
GGTTAGTTTAGGTGTGGATGTGTTCAGAATTGACAGTGCAATCAGAAGTT
TTGGCCTCCCCATCGGCCCTTTCCAGCTTCTGGACTTAGCAGGCTACGGA
GTCGCTGCTGCAACTTCAAAAGAATTTGACAAGGCATTCCCTGACCGTTC
ATTCCAGTCTCCTTTGGTTGATCTTTTGTTGAAAAGTGGACGAAATGGTA
AAGCCAATGGAAAAGGATTATATACATATGAAAAGGGAAGCAAGCCAAA
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