CB293316 | Citrus Genome Database

Overview


Name	CB293316
Unique Name	CB293316
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	749

Libraries


Library Name	Type
Washington Navel orange cold acclimated flavedo & albedo cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SHIBS (Fatty acid oxidation complex subunit alpha OS=Shigella boydii serotype 4 (strain Sb227) GN=fadJ PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.772e-33
Identity = 82/234 (35.04%), Postives = 123/234 (52.56%), Query Frame = 1

Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K
Sbjct:  360 VRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTKGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRK 592

[Close]

BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SHIB3 (Fatty acid oxidation complex subunit alpha OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=fadJ PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.772e-33
Identity = 82/234 (35.04%), Postives = 123/234 (52.56%), Query Frame = 1

Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K
Sbjct:  360 VRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTKGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRK 592

[Close]

BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SHEHH (Fatty acid oxidation complex subunit alpha OS=Shewanella halifaxensis (strain HAW-EB4) GN=fadJ PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.772e-33
Identity = 77/226 (34.07%), Postives = 113/226 (50.00%), Query Frame = 1

Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTY 729
            V R  +T    +N + ++    +Y   KD D+V+EAV E + LK ++  ++E+ C  H I A+NTS++ +  + E  S  + +IG H+FSP   MPL+E++  E+TSA+ I   +              +  GF VNR    Y   A  L+  G  V  +D A+  FG P+GP  LLD  G  V A  S   +K   +R       D LL   R G+ NGKG Y Y
Sbjct:  364 VKRRHMTPAVRDNLMALMTTTTEYKGIKDADIVVEAVFEDLALKHQMVKDVERECGEHTIFASNTSSLPIGQIAEAASRPENVIGLHYFSPVEKMPLVEVIAHEKTSAETIATTVAFAKKQGKTPIVVQDGAGFYVNRILALYMNEAAQLLLEGQSVEHLDKALIKFGFPVGPMTLLDEVGIDVGAKISPILEKELGERFKAPTAFDKLLADDRKGRKNGKGFYLY 589

[Close]

BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_ECOUT (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain UTI89 / UPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.772e-33
Identity = 81/234 (34.62%), Postives = 123/234 (52.56%), Query Frame = 1

Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +              +  GF VNR   PY   A  +++ G  +  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K
Sbjct:  360 VRRRHLKASERDKQLALISGTTDYCGFAHRDLIIEAVFENLELKQQMVAEVEQNCATHTIFASNTSSLPIGDIAAHAARPEQVIGLHFFSPVEKMPLVEIIPHASTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERIEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIMPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRK 592

[Close]

BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_ECOLI (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain K12) GN=fadJ PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.772e-33
Identity = 82/234 (35.04%), Postives = 123/234 (52.56%), Query Frame = 1

Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K
Sbjct:  360 VRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTQGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRK 592

[Close]

BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_ECOL5 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.772e-33
Identity = 81/234 (34.62%), Postives = 123/234 (52.56%), Query Frame = 1

Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +              +  GF VNR   PY   A  +++ G  +  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K
Sbjct:  360 VRRRHLKASERDKQLALISGTTDYCGFAHRDLIIEAVFENLELKQQMVAEVEQNCATHTIFASNTSSLPIGDIAAHAARPEQVIGLHFFSPVEKMPLVEIIPHASTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERIEHIDTALVKFGFPVGPIQLLDEVGIDTGTKIMPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRK 592

[Close]

BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_ECOK1 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O1:K1 / APEC GN=fadJ PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.772e-33
Identity = 81/234 (34.62%), Postives = 123/234 (52.56%), Query Frame = 1

Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +              +  GF VNR   PY   A  +++ G  +  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K
Sbjct:  360 VRRRHLKASERDKQLALISGTTDYCGFAHRDLIIEAVFENLELKQQMVAEVEQNCATHTIFASNTSSLPIGDIAAHAARPEQVIGLHFFSPVEKMPLVEIIPHASTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERIEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIMPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRK 592

[Close]

BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_ECODH (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain K12 / DH10B) GN=fadJ PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.772e-33
Identity = 82/234 (35.04%), Postives = 123/234 (52.56%), Query Frame = 1

Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K
Sbjct:  360 VRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTQGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRK 592

[Close]

BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_ECOBW (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain K12 / BW2952) GN=fadJ PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.772e-33
Identity = 82/234 (35.04%), Postives = 123/234 (52.56%), Query Frame = 1

Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K
Sbjct:  360 VRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTQGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRK 592

[Close]

BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_ECO5E (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.772e-33
Identity = 82/234 (35.04%), Postives = 123/234 (52.56%), Query Frame = 1

Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K
Sbjct:  360 VRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVAHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRK 592

The following BLAST results are available for this feature:

BLAST of CB293316 vs. ExPASy Swiss-Prot

BLAST of CB293316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224


Match Name	E-value	Identity	Description
FADJ_SHIBS	1.772e-33	35.04	Fatty acid oxidation complex subunit alpha OS=Shig...	[more]
FADJ_SHIB3	1.772e-33	35.04	Fatty acid oxidation complex subunit alpha OS=Shig...	[more]
FADJ_SHEHH	1.772e-33	34.07	Fatty acid oxidation complex subunit alpha OS=Shew...	[more]
FADJ_ECOUT	1.772e-33	34.62	Fatty acid oxidation complex subunit alpha OS=Esch...	[more]
FADJ_ECOLI	1.772e-33	35.04	Fatty acid oxidation complex subunit alpha OS=Esch...	[more]
FADJ_ECOL5	1.772e-33	34.62	Fatty acid oxidation complex subunit alpha OS=Esch...	[more]
FADJ_ECOK1	1.772e-33	34.62	Fatty acid oxidation complex subunit alpha OS=Esch...	[more]
FADJ_ECODH	1.772e-33	35.04	Fatty acid oxidation complex subunit alpha OS=Esch...	[more]
FADJ_ECOBW	1.772e-33	35.04	Fatty acid oxidation complex subunit alpha OS=Esch...	[more]
FADJ_ECO5E	1.772e-33	35.04	Fatty acid oxidation complex subunit alpha OS=Esch...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS01_05df09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05df09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB293316 ID=CB293316; Name=CB293316; organism=Citrus sinensis; type=EST; length=749bp
GCCATTTAAGGGACAGGGATAAAAACAATAGAAGCAAATGTTCCATGATT
GGTAACAAGAGGAAAATTGACACAGGATAAAGCAAACAATGCCCTCAAAA
TGCTTAAAGGAGTGCTGGACTACTCAGAATTTAAAGATGTTGACATGGTC
ATAGAGGCAGTCATTGAAAGTGTTCCTCTGAAACAAAAAATATTCAGCGA
ACTAGAGAAAGCTTGCCCTCCTCACTGCATTTTGGCAACAAACACTTCTA
CTATTGACCTGAACATAGTTGGAGAAAAGACCAGCTCTCAGGATCGAATT
ATAGGGGCACATTTTTTCAGTCCTGCTCATGTGATGCCACTTTTGGAGAT
TGTTCGGACAGAGAGAACTTCTGCACAAGTAATTCTTGATCTCATGACAG
TCGGGAAAATCATAAAGAAAGTTCCTGTTGTGGTGGGTAACTGCACTGGC
TTTGCAGTCAATCGAGCGTTCTTCCCATATTCACAAAGTGCTCGCTTGCT
GGTTAGTTTAGGTGTGGATGTGTTCAGAATTGACAGTGCAATCAGAAGTT
TTGGCCTCCCCATCGGCCCTTTCCAGCTTCTGGACTTAGCAGGCTACGGA
GTCGCTGCTGCAACTTCAAAAGAATTTGACAAGGCATTCCCTGACCGTTC
ATTCCAGTCTCCTTTGGTTGATCTTTTGTTGAAAAGTGGACGAAATGGTA
AAGCCAATGGAAAAGGATTATATACATATGAAAAGGGAAGCAAGCCAAA