CB293316

Overview
NameCB293316
Unique NameCB293316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_ECO57 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O157:H7 GN=fadJ PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.772e-33
Identity = 82/234 (35.04%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K
Sbjct:  360 VRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVAHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_ECO45 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.772e-33
Identity = 81/234 (34.62%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +              +  GF VNR   PY   A  +++ G  +  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K
Sbjct:  360 VRRRHLKASERDKQLALISGTTDYCGFAHRDLIIEAVFENLELKQQMVAEVEQNCATHTIFASNTSSLPIGDIAAHAARPEQVIGLHFFSPVEKMPLVEIIPHASTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERIEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIMPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGCK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_ECO27 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.772e-33
Identity = 81/234 (34.62%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +              +  GF VNR   PY   A  +++ G  +  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K
Sbjct:  360 VRRRHLKASERDKQLALISGTTDYCGFAHRDLIIEAVFENLELKQQMVAEVEQNCATHTIFASNTSSLPIGDIAAHAARPEQVIGLHFFSPVEKMPLVEIIPHASTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERIEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIMPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SHISS (Fatty acid oxidation complex subunit alpha OS=Shigella sonnei (strain Ss046) GN=fadJ PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.315e-33
Identity = 82/234 (35.04%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K
Sbjct:  360 VRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHAARPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SHIFL (Fatty acid oxidation complex subunit alpha OS=Shigella flexneri GN=fadJ PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.315e-33
Identity = 82/234 (35.04%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K
Sbjct:  360 VRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHAARPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SHIF8 (Fatty acid oxidation complex subunit alpha OS=Shigella flexneri serotype 5b (strain 8401) GN=fadJ PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.315e-33
Identity = 82/234 (35.04%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K
Sbjct:  360 VRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHAARPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_SHIDS (Fatty acid oxidation complex subunit alpha OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=fadJ PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.315e-33
Identity = 82/234 (35.04%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K
Sbjct:  360 VRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_ERWCT (Fatty acid oxidation complex subunit alpha OS=Erwinia carotovora subsp. atroseptica GN=fadJ PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.315e-33
Identity = 74/214 (34.58%), Postives = 108/214 (50.47%), Query Frame = 1
Query:   94 LKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEK 735
            + ++ G  DY  F+  D+VIEAV E + LK+++ +E+E    PH I A+NTS++ ++ + E       ++G H+FSP   MPL+E++    TSA+ +   +              +  GF VNR   PY   A   +  G  +  ID A+  FG P+GP  LLD  G  VA        +   DR    P  D +LK GR G+ NGKG Y Y K
Sbjct:  388 MTLISGSTDYRGFEHADIVIEAVFEDLALKRQMITEIEDHAAPHTIFASNTSSLPIHQIAEGARRPQLVVGLHYFSPVDKMPLVEVIPHAHTSAETVATTVALARKQGKTAIVVGDSAGFYVNRILAPYINEAAYCLLEGEPIESIDYALVRFGFPVGPLALLDEVGIDVATKIVPVLSEELGDRFTSPPAFDAILKDGRKGRKNGKGFYRYNK 601          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_ECOSM (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.315e-33
Identity = 81/234 (34.62%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +              +  GF VNR   PY   A  +++ G  +  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K
Sbjct:  360 VRRRHLKASERDKQLALISGTTDYCGFAHRDLIIEAVFENLELKQQMVAEVEQNCATHTIFASNTSSLPIGDIAAHAARPEQVIGLHFFSPVEKMPLVEIIPHASTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERIEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRK 592          
BLAST of CB293316 vs. ExPASy Swiss-Prot
Match: FADJ_ECOSE (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain SE11) GN=fadJ PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.315e-33
Identity = 82/234 (35.04%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   52 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSK 744
            V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +              +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K
Sbjct:  360 VRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRK 592          
The following BLAST results are available for this feature:
BLAST of CB293316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
FADJ_ECO571.772e-3335.04Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO451.772e-3334.62Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO271.772e-3334.62Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_SHISS2.315e-3335.04Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_SHIFL2.315e-3335.04Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_SHIF82.315e-3335.04Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_SHIDS2.315e-3335.04Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_ERWCT2.315e-3334.58Fatty acid oxidation complex subunit alpha OS=Erwi... [more]
FADJ_ECOSM2.315e-3334.62Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECOSE2.315e-3335.04Fatty acid oxidation complex subunit alpha OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05df09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05df09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293316 ID=CB293316; Name=CB293316; organism=Citrus sinensis; type=EST; length=749bp
GCCATTTAAGGGACAGGGATAAAAACAATAGAAGCAAATGTTCCATGATT
GGTAACAAGAGGAAAATTGACACAGGATAAAGCAAACAATGCCCTCAAAA
TGCTTAAAGGAGTGCTGGACTACTCAGAATTTAAAGATGTTGACATGGTC
ATAGAGGCAGTCATTGAAAGTGTTCCTCTGAAACAAAAAATATTCAGCGA
ACTAGAGAAAGCTTGCCCTCCTCACTGCATTTTGGCAACAAACACTTCTA
CTATTGACCTGAACATAGTTGGAGAAAAGACCAGCTCTCAGGATCGAATT
ATAGGGGCACATTTTTTCAGTCCTGCTCATGTGATGCCACTTTTGGAGAT
TGTTCGGACAGAGAGAACTTCTGCACAAGTAATTCTTGATCTCATGACAG
TCGGGAAAATCATAAAGAAAGTTCCTGTTGTGGTGGGTAACTGCACTGGC
TTTGCAGTCAATCGAGCGTTCTTCCCATATTCACAAAGTGCTCGCTTGCT
GGTTAGTTTAGGTGTGGATGTGTTCAGAATTGACAGTGCAATCAGAAGTT
TTGGCCTCCCCATCGGCCCTTTCCAGCTTCTGGACTTAGCAGGCTACGGA
GTCGCTGCTGCAACTTCAAAAGAATTTGACAAGGCATTCCCTGACCGTTC
ATTCCAGTCTCCTTTGGTTGATCTTTTGTTGAAAAGTGGACGAAATGGTA
AAGCCAATGGAAAAGGATTATATACATATGAAAAGGGAAGCAAGCCAAA
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