CB293322

Overview
NameCB293322
Unique NameCB293322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293322 vs. ExPASy Swiss-Prot
Match: CDPKG_ARATH (Calcium-dependent protein kinase 16 OS=Arabidopsis thaliana GN=CPK16 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.081e-11
Identity = 43/154 (27.92%), Postives = 89/154 (57.79%), Query Frame = 1
Query:   13 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNP---TEAELQDMINEVDADGNGTIDFPEFLN--LMARKMKDTDSE---EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 450
            +A  L ++++++ ++ F   D D +G I+ +E+   +     +P    +A + +++  +D++ +G +DF EF+   L   ++++ DSE   +  + AF  FD D +GFI+A ELR    + G K     ++ ++ EAD+D DG+I+ +EF +++
Sbjct:  404 LATTLDEEELADLRDQFDAIDVDKNGVISLEEMRQALAK--DHPWKLKDARVAEILQAIDSNTDGFVDFGEFVAAALHVNQLEEHDSEKWQQRSRAAFEKFDIDGDGFITAEELR---MHTGLK---GSIEPLLEEADIDNDGKISLQEFRRLL 549          
BLAST of CB293322 vs. ExPASy Swiss-Prot
Match: EFCB2_HUMAN (EF-hand calcium-binding domain-containing protein 2 OS=Homo sapiens GN=EFCAB2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 40/105 (38.10%), Postives = 60/105 (57.14%), Query Frame = 1
Query:   46 EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEV-DADGNGTIDFPEFLNLMARKMKDTD----SEEELKEAFRVFDKDQNGFISAAELRHVMT 345
            + KEAF +FD + +  +  +E+GT++RSLG  PTE EL D+I EV + +  G I F +FL +M   + +       E+ L  AF V D  + GF++  EL   MT
Sbjct:  154 KIKEAFEVFDHESNNTVDVREIGTIIRSLGCCPTEGELHDLIAEVEEEEPTGYIRFEKFLPVMTEILLERKYRPIPEDVLLRAFEVLDSAKRGFLTKDELIKYMT 258          
BLAST of CB293322 vs. ExPASy Swiss-Prot
Match: SCMC2_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus laevis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 35/126 (27.78%), Postives = 70/126 (55.56%), Query Frame = 1
Query:   61 FSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 438
            F   D + DG I   +L   ++ LG + TE EL+ ++   D D +G +DF EF++ +       D E++L+  F+  DK  +G I A E+   + +LG  +++++ +++++  D +G   I++ E+
Sbjct:   65 FQELDVNKDGAICINDLAVGLKRLGVHRTELELRKIVKAGDKDQDGQLDFDEFVHYL------RDHEKKLRLVFKSLDKKNDGRIDAQEIMQSLRDLGVNISEQQAEKILKSMDKNGTMTIDWNEW 184          
BLAST of CB293322 vs. ExPASy Swiss-Prot
Match: EFH52_TRYCR (EF-hand protein 5 variant 2 OS=Trypanosoma cruzi PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 38/126 (30.16%), Postives = 74/126 (58.73%), Query Frame = 1
Query:   94 ITTKELGTVMRSLGQNPTEAELQD---MINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVD-GDGQINYEEFVKVMMAK 459
            I +K++  +M+++G + TE E  D   +I + +      + F +FL LM R++ DT ++E L+ AF  +DK + G+++  +   +   L E+ T EE++E++  A+VD  D +I+Y  FV  + ++
Sbjct:   80 IPSKDVYALMQNVGMHLTEEEFHDALRVIGQSEPQNADELSFSDFLLLMTREVDDTMADE-LRSAFFHYDKHKTGYVTRKQFTELFATLAERSTPEELEELLAVAEVDETDDKIDYNRFVNELTSR 204          
BLAST of CB293322 vs. ExPASy Swiss-Prot
Match: MLC1_DROPS (Myosin light chain alkali OS=Drosophila pseudoobscura pseudoobscura GN=Mlc1 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11
Identity = 43/144 (29.86%), Postives = 75/144 (52.08%), Query Frame = 1
Query:   37 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA--RKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREA--DVDGDGQINYEEFVKVMMA 456
            +I   +  F +    G+G I   +LG  +R+L  NPT A ++ M           I   EFL + +  +K K+    E+  E  +++DK++NG +  AEL+H +  LGE L DE+V+ +  +     D +G I Y +F++ +M+
Sbjct:    8 EIENVEFVFEVMGSAGEG-IDAVDLGDALRALNLNPTLALIEKM-GGTKKRNEKKIKMDEFLPIYSQVKKEKEQGCYEDFIECLKLYDKEENGTMMLAELQHALLALGESLDDEQVETLFADCMDPEDDEGLIPYSQFIQRLMS 149          
BLAST of CB293322 vs. ExPASy Swiss-Prot
Match: ACTN2_HUMAN (Alpha-actinin-2 OS=Homo sapiens GN=ACTN2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11
Identity = 35/106 (33.02%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   16 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELR 333
            A  +T +Q++EF+ +F+ FD+  +G +  ++    + S+G +  EAE   ++  VD +G GT+ F  F++ M R+  DTD+ E++  +FR+   D+  +I A ELR
Sbjct:  747 AKGITQEQMNEFRASFNHFDRRKNGLMDHEDFRACLISMGYDLGEAEFARIMTLVDPNGQGTVTFQSFIDFMTRETADTDTAEQVIASFRILASDK-PYILAEELR 851          
BLAST of CB293322 vs. ExPASy Swiss-Prot
Match: ACTN2_BOVIN (Alpha-actinin-2 OS=Bos taurus GN=ACTN2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11
Identity = 35/106 (33.02%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   16 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELR 333
            A  +T +Q++EF+ +F+ FD+  +G +  ++    + S+G +  EAE   ++  VD +G GT+ F  F++ M R+  DTD+ E++  +FR+   D+  +I A ELR
Sbjct:  747 AKGITQEQMNEFRASFNHFDRRKNGLMDHEDFRACLISMGYDLGEAEFARIMTLVDPNGQGTVTFQSFIDFMTRETADTDTAEQVIASFRILASDK-PYILAEELR 851          
The following BLAST results are available for this feature:
BLAST of CB293322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
CDPKG_ARATH2.081e-1127.92Calcium-dependent protein kinase 16 OS=Arabidopsis... [more]
EFCB2_HUMAN3.550e-1138.10EF-hand calcium-binding domain-containing protein ... [more]
SCMC2_XENLA4.637e-1127.78Calcium-binding mitochondrial carrier protein SCaM... [more]
EFH52_TRYCR4.637e-1130.16EF-hand protein 5 variant 2 OS=Trypanosoma cruzi P... [more]
MLC1_DROPS6.056e-1129.86Myosin light chain alkali OS=Drosophila pseudoobsc... [more]
ACTN2_HUMAN6.056e-1133.02Alpha-actinin-2 OS=Homo sapiens GN=ACTN2 PE=1 SV=1[more]
ACTN2_BOVIN6.056e-1133.02Alpha-actinin-2 OS=Bos taurus GN=ACTN2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05dg01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dg01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293322 ID=CB293322; Name=CB293322; organism=Citrus sinensis; type=EST; length=789bp
GCCCGTGGAAAAATGGCGGATCAGCTCACGGACGATCAGATCTCTGAGTT
CAAAGAGGCCTTCAGCTTGTTTGACAAGGATGGCGACGGTTGCATTACCA
CCAAGGAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAG
GCTGAGCTCCAGGACATGATCAATGAAGTGGATGCTGATGGTAATGGAAC
TATTGATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATA
CCGACTCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACAAGGAT
CAGAATGGTTTCATCTCAGCTGCTGAGCTGCGCCATGTGATGACAAACCT
AGGAGAGAAACTTACTGATGAAGAAGTTGATGAGATGATAAGGGAAGCTG
ATGTTGATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATG
ATGGCCAAGTAATGACCCCAACCCACCAATACTTATAAAATGGGTTGACT
AAATTATAAAGGGATTCCTAGTTTTCTCTTTTACAATTTTTAATTTGATA
GTCATGAGGGTCAGGCTAAAGGAAGCAATGGTCTTTTAATGGTGATGGGC
CTGATGGTGTAGGAAGAATGTTGTCTCCCTCGTCAATATGTCTTGTGACT
CGCAAAACTTTTCGGTTTTTATTATTTTAGTTGTTCTGCTGTTCTATGAA
TGTTGTTGTCTGTTTAATGTGTTTCATTAATTTCTGCCCTTGCGATGTTT
ATTTTTCTTTTGGTCGAAATATGTATCCTATTTTATGTA
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