CB293327

Overview
NameCB293327
Unique NameCB293327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length256
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293327 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.009e-11
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   82 PGSYSAKDYTDPPPEPLFDAVELTKWSFYKALIAEFIAXXXXXXXXXXXXIGYKSQTD 255
            P  +  +DY DPPP P FDA ELTKWS Y+A+IAEF+A            IGYK Q+D
Sbjct:    8 PDGFQTRDYEDPPPTPFFDAEELTKWSLYRAVIAEFVATLLFLYVTVLTVIGYKIQSD 65          
BLAST of CB293327 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.427e-11
Identity = 33/66 (50.00%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   58 AKDTGVV*PGSYSAKDYTDPPPEPLFDAVELTKWSFYKALIAEFIAXXXXXXXXXXXXIGYKSQTD 255
            AKD  V   G  +A+DY DPPP P FD  EL KW  Y+A+IAEF+A            IGYK+QTD
Sbjct:    2 AKDLDVNESGPPAARDYKDPPPAPFFDMEELRKWPLYRAVIAEFVATLLFLYVSILTVIGYKAQTD 67          
BLAST of CB293327 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.427e-11
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   82 PGSYSAKDYTDPPPEPLFDAVELTKWSFYKALIAEFIAXXXXXXXXXXXXIGYKSQTD 255
            P  +  +DY DPPP P FDA ELTKWS Y+A+IAEF+A            IGYK Q+D
Sbjct:    8 PEGFQTRDYEDPPPTPFFDADELTKWSLYRAVIAEFVATLLFLYITVLTVIGYKIQSD 65          
BLAST of CB293327 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.635e-11
Identity = 31/66 (46.97%), Postives = 37/66 (56.06%), Query Frame = 1
Query:   58 AKDTGVV*PGSYSAKDYTDPPPEPLFDAVELTKWSFYKALIAEFIAXXXXXXXXXXXXIGYKSQTD 255
            AKD   V    +  +DY DPPP P  D  EL KWSFY+A+IAEF+A            IGYK Q+D
Sbjct:    2 AKDVEAVPGEGFQTRDYQDPPPAPFIDGAELKKWSFYRAVIAEFVATLLFLYITVLTVIGYKIQSD 67          
The following BLAST results are available for this feature:
BLAST of CB293327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PIP23_ARATH2.009e-1151.72Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP24_ARATH3.427e-1150.00Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP22_ARATH3.427e-1151.72Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP21_ARATH7.635e-1146.97Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05dg05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dg05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293327 ID=CB293327; Name=CB293327; organism=Citrus sinensis; type=EST; length=256bp
GCAAAGATCTCCTTTTAAGCTGTTTCTCTCCAAATCATTGTTACTGGTTT
TCCAAAGGCGAAAGACACTGGGGTGGTATAACCCGGCTCATATTCAGCCA
AGGACTACACGGACCCACCGCCGGAGCCGCTATTCGACGCCGTGGAGCTG
ACCAAATGGTCATTCTACAAAGCCTTGATAGCTGAGTTCATAGCAACCCT
GCTCTTTCTTTACGTCACTGTCTTGACTGTCATTGGCTACAAAAGCCAGA
CCGATC
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