CB293382

Overview
NameCB293382
Unique NameCB293382
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: RLK7_ARATH (Receptor-like protein kinase At5g59670 OS=Arabidopsis thaliana GN=At5g59670 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 1
Query:  436 KNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLEDD 711
            K F+YS++   T+NF+   VLG+GGFG V+ G V               +AVK L+Q   QG KE+  E++ L ++HH NLV LVGYC E D
Sbjct:  552 KRFTYSEVVQVTKNFQ--RVLGKGGFGMVYHGTVKGSEQ----------VAVKVLSQSSTQGSKEFKAEVDLLLRVHHTNLVSLVGYCCEGD 631          
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: RLK6_ARATH (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  391 QTPRSEGEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLEDD 711
            +T RS    + + N + F+YS++ T T NF  + VLG+GGFG V+ G V+              +AVK L+    QG+KE+  E+  L ++HH NLV LVGYC E +
Sbjct:  566 RTIRSSESAIMTKN-RRFTYSEVVTMTNNF--ERVLGKGGFGMVYHGTVNNTEQ----------VAVKMLSHSSSQGYKEFKAEVELLLRVHHKNLVGLVGYCDEGE 659          
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: CRK29_ARATH (Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana GN=CRK29 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  448 YSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLEDD 711
            +  LKTAT NF  ++ LG GGFGSV+KG   +          G  IAVKRL+    QG  E+  EI  L +L H NLV+L+G+C++ +
Sbjct:  347 FETLKTATDNFSSENELGRGGFGSVYKGVFPQ----------GQEIAVKRLSGNSGQGDNEFKNEILLLAKLQHRNLVRLIGFCIQGE 424          
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: ANX2_ARATH (Receptor-like protein kinase ANXUR2 OS=Arabidopsis thaliana GN=ANX2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  436 KNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLE 705
            + FS S++K  T NF   +V+G GGFG V+KG +D           G  +A+K+ N    QG  E+ TEI  L +L H +LV L+GYC E
Sbjct:  507 RRFSLSEIKHGTHNFDESNVIGVGGFGKVYKGVIDG----------GTKVAIKKSNPNSEQGLNEFETEIELLSRLRHKHLVSLIGYCDE 586          
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = 1
Query:  400 RSEGEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLE 705
            ++E +  Q    K F++ +L   T NF   + +G GG+G V+KG         T P  G +IA+KR  Q   QG  E+ TEI  L ++HH N+VKL+G+C +
Sbjct:  608 KNEMDAPQLMGTKAFTFEELSKCTNNFSDANDVGGGGYGQVYKG---------TLPN-GQVIAIKRAQQGSMQGAFEFKTEIELLSRVHHKNVVKLLGFCFD 699          
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: Y5182_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51820 OS=Arabidopsis thaliana GN=At1g51820 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 43/105 (40.95%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  397 PRSEGEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLEDD 711
            PRS    + + N + FSYS +   T NF+   +LG+GGFG V+ G+V+         GT   +AVK L+    QG+K++  E+  L ++HH NLV LVGYC E D
Sbjct:  554 PRSSEPAIVTKN-RRFSYSQVVIMTNNFQ--RILGKGGFGMVYHGFVN---------GTEQ-VAVKILSHSSSQGYKQFKAEVELLLRVHHKNLVGLVGYCDEGD 645          
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: CRK28_ARATH (Cysteine-rich receptor-like protein kinase 28 OS=Arabidopsis thaliana GN=CRK28 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 39/86 (45.35%), Postives = 50/86 (58.14%), Query Frame = 1
Query:  448 YSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLE 705
            +  LK AT NF P++ LG GGFGSV+KG              G  IAVKRL+    QG  E+  EI  L +L H NLV+L+G+C+E
Sbjct:  351 FETLKAATDNFSPENELGRGGFGSVYKGVFSG----------GQEIAVKRLSCTSGQGDSEFKNEILLLAKLQHRNLVRLLGFCIE 426          
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.269e-11
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  403 SEGEILQSSNIK--NFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLEDD 711
            ++ E + S ++K   F+YS+LK+AT++F P + LGEGGFG V+KG +++          G  +AVK L+    QG  +++ EI  +  + H NLVKL G C E +
Sbjct:  666 TDDEEILSMDVKPYTFTYSELKSATQDFDPSNKLGEGGFGPVYKGKLND----------GREVAVKLLSVGSRQGKGQFVAEIVAISAVQHRNLVKLYGCCYEGE 760          
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: Y2899_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g28990 OS=Arabidopsis thaliana GN=At2g28990 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.269e-11
Identity = 41/103 (39.81%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  403 SEGEILQSSNIKNFSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLEDD 711
            S+ E   +S    F+YS+++  T NF  D  LGEGGFG V+ G+V+              +AVK L+Q   QG+K +  E+  L ++HH NLV LVGYC E +
Sbjct:  554 SQSESSFTSKKIRFTYSEVQEMTNNF--DKALGEGGFGVVYHGFVNVIEQ----------VAVKLLSQSSSQGYKHFKAEVELLMRVHHINLVSLVGYCDEGE 644          
BLAST of CB293382 vs. ExPASy Swiss-Prot
Match: Y2214_ARATH (Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.269e-11
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  442 FSYSDLKTATRNFRPDSVLGEGGFGSVFKGWVDEHSLTSTRPGTGMLIAVKRLNQEGFQGHKEWLTEINYLGQLHHPNLVKLVGYCLED 708
            FS S+L+  T+NF    ++G GGFG+V+ G +D+          G  +A+KR N +  QG  E+ TEI  L +L H +LV L+GYC E+
Sbjct:  513 FSLSELQEVTKNFDASEIIGVGGFGNVYIGTIDD----------GTQVAIKRGNPQSEQGITEFHTEIQMLSKLRHRHLVSLIGYCDEN 591          
The following BLAST results are available for this feature:
BLAST of CB293382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RLK7_ARATH7.798e-1243.48Receptor-like protein kinase At5g59670 OS=Arabidop... [more]
RLK6_ARATH7.798e-1239.25Receptor-like protein kinase At3g21340 OS=Arabidop... [more]
CRK29_ARATH1.018e-1143.18Cysteine-rich receptor-like protein kinase 29 OS=A... [more]
ANX2_ARATH1.018e-1141.11Receptor-like protein kinase ANXUR2 OS=Arabidopsis... [more]
Y5977_ARATH1.330e-1137.25Probable leucine-rich repeat receptor-like protein... [more]
Y5182_ARATH1.330e-1140.95Probable LRR receptor-like serine/threonine-protei... [more]
CRK28_ARATH1.737e-1145.35Cysteine-rich receptor-like protein kinase 28 OS=A... [more]
Y5614_ARATH2.269e-1138.10Probable LRR receptor-like serine/threonine-protei... [more]
Y2899_ARATH2.269e-1139.81Probable leucine-rich repeat receptor-like protein... [more]
Y2214_ARATH2.269e-1140.45Probable receptor-like protein kinase At2g21480 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ab03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ab03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293382 ID=CB293382; Name=CB293382; organism=Citrus sinensis; type=EST; length=712bp
GCCCTTTAAAGAGAACTAGNCTCGAGNNTTTTTTTTTTTTTTCTTCATAC
TCATTTGGGTGCTTCTTAATCCAGAATTGAACCCAAATCCCACCCTAAAA
GTGAAAAAGATCACACCCAAAATCTATTTGTGATCATTTGTTGAGTTGGA
GTTCTGGGTTCTGTTTGTTTCATTGAGGATAGAAAGAGAGAGTACAAAAC
AAAACCATAAAGGAAAAAAATTTCTTTAAATAAGATCTGGGTATTTTGTT
TTGTCTGGATGGGAGCTTGCTGTAGCAACAGGATTAAGGCTGAGACTCCT
TCTCATACTGATGTGAATTCAAAATATTCTAGCAGAGATGTAAAGAGTTT
AAGCAGTTCCAGTGGTAAGGCCTCTTCATTTTCCCTGCCTCAAACACCAC
GGAGTGAGGGTGAGATCTTGCAGTCATCAAATATAAAGAATTTCAGCTAC
AGCGACCTTAAGACAGCTACCAGAAACTTCCGCCCTGATAGTGTTTTGGG
AGAAGGCGGCTTTGGTTCTGTCTTCAAAGGATGGGTTGACGAGCATTCAC
TTACTTCTACAAGGCCTGGTACTGGCATGTTAATTGCTGTGAAGAGGCTT
AACCAAGAAGGTTTCCAGGGTCACAAGGAATGGCTAACAGAAATTAACTA
TCTTGGGCAGTTGCATCATCCTAATCTTGTGAAGTTGGTTGGTTACTGTT
TAGAGGATGATC
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