CB293386

Overview
NameCB293386
Unique NameCB293386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8303 contig Csv1_Contig8303:8..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293386 vs. ExPASy Swiss-Prot
Match: VPP4_HUMAN (V-type proton ATPase 116 kDa subunit a isoform 4 OS=Homo sapiens GN=ATP6V0A4 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.016e-27
Identity = 76/210 (36.19%), Postives = 119/210 (56.67%), Query Frame = 3
Query:  147 LFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKST--TRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQI-KLGFIAGLVPREKSMSFERMLFRATRGNVFLR 767
            +FRSE M L Q+ + +E+A+  V+ LGELGL+QFKDLN   + FQR +  ++++C  + R LRF +++M    ++  ++ +  T        LE  L  LE EL E N N   L+++  EL E K +L+K  +FF +    A     +  ++ T  +          E+ A P+    KLGFIAG++ RE+  SFER+L+R  RGNV+L+
Sbjct:    4 VFRSEEMCLSQLFLQVEAAYCCVAELGELGLVQFKDLNMNVNSFQRKFVNEVRRCESLERILRFLEDEMQNEIVVQLLEKSPLTPLPREMITLETVLEKLEGELQEANQNQQALKQSFLELTELKYLLKKTQDFFETETNLA----DDFFTEDTSGLL---------ELKAVPAYMTGKLGFIAGVINRERMASFERLLWRICRGNVYLK 200          
BLAST of CB293386 vs. ExPASy Swiss-Prot
Match: VPP4_MOUSE (V-type proton ATPase 116 kDa subunit a isoform 4 OS=Mus musculus GN=Atp6v0a4 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.469e-26
Identity = 74/219 (33.79%), Postives = 114/219 (52.05%), Query Frame = 3
Query:  147 LFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILS--SVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSAL----------TSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLR 767
            +FRSE M L Q+ + +E+A+  V+ LGELGL+QFKDLN+  + FQR +  ++++C  + R LRF +++M    ++      + T        LE  L  LE EL E N +   L+++  EL E K +L+K  +FF +            TS   + R + +  TG                      KLGF AG++ RE+  SFER+L+R  RGNV+L+
Sbjct:    4 VFRSEEMCLSQVFLQVEAAYCCVAELGELGLVQFKDLNANVNSFQRKFVNEVRRCESLERILRFLEDEMQNEILIQVPEKDAETPLPREMITLETTLEKLEGELQEANQSHQALKKSFLELTELKYLLKKTQDFFETETNLGEDFFVEDTSGLLELRTIPAFMTG----------------------KLGFTAGVINRERMASFERLLWRVCRGNVYLK 200          
BLAST of CB293386 vs. ExPASy Swiss-Prot
Match: VPH1_NEUCR (V-type proton ATPase subunit a OS=Neurospora crassa GN=vph-1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.218e-25
Identity = 75/222 (33.78%), Postives = 117/222 (52.70%), Query Frame = 3
Query:  150 FRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKS------TTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEM---SADPSKQ---IKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVV 779
            FRS  M +VQ+ I  E      + LGELGL+ F+DLNSE S FQR +   I++   + R+LR+F  QM KAGI            T       D+L  +   LE  +  +N + + L++   EL E++ VL++AG FF  A          +E  +      + PLL D E    +AD  +    + +GF+AG++ R++  +FER+L+R  RGN+++ QA +
Sbjct:    9 FRSADMSMVQLYISNEIGREVCNALGELGLVHFRDLNSELSAFQRAFTQDIRRLDNVERQLRYFHSQMEKAGIPLRKFDPDVDILTPPTTTEIDELAERAQTLEQRVSSLNESYETLKKREVELTEWRWVLREAGGFFDRA-------HGNVEEIRASTDNDDAPLLQDVEQHNTAADVERSFSGMNIGFVAGVIGRDRVDAFERILWRTLRGNLYMNQAEI 223          
BLAST of CB293386 vs. ExPASy Swiss-Prot
Match: VPP2_MOUSE (V-type proton ATPase 116 kDa subunit a isoform 2 OS=Mus musculus GN=Atp6v0a2 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.281e-21
Identity = 72/215 (33.49%), Postives = 117/215 (54.42%), Query Frame = 3
Query:  147 LFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGI-LSSVKSTTRAD--NNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEM---SADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQA 773
            LFRSE M L Q+ +   +A+  +S LGE GL+QF+DLN   S FQR +  ++K+C E+ R L +  +++ +A I L   +++  A    +  +++ +L  LE EL E+  N +KL++   ELVEY  +L+    F           +R +E + T E   E P L +  +   S       KLGF++GL+ + +  +FERML+RA +G   +  A
Sbjct:    4 LFRSESMCLAQLFLQSGTAYECLSALGEKGLVQFRDLNQNVSSFQRKFVGEVKRCEELERILVYLVQEITRADIPLPEGEASPPAPPLKHVLEMQEQLQKLEVELREVTKNKEKLRKNLLELVEYTHMLRVTKTFL----------KRNVEFEPTYE---EFPALENDSLLDYSCMQRLGAKLGFVSGLIQQGRVEAFERMLWRACKGYTIVTYA 205          
BLAST of CB293386 vs. ExPASy Swiss-Prot
Match: VPP3_HUMAN (V-type proton ATPase 116 kDa subunit a isoform 3 OS=Homo sapiens GN=TCIRG1 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 5.317e-20
Identity = 65/205 (31.71%), Postives = 108/205 (52.68%), Query Frame = 3
Query:  147 LFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAG-ILSSVKSTTRADNNTDDLEV--KLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRG 752
            +FRSE + LVQ+ +P  +A+  VS LGELGL++F+DLN+  S FQR +   +++C E+ +   F +E++ +AG +L   K    A    D L +  +   L  EL ++  N   L+    +L  +  VL++  E   +A  +  A +R             TPLL   +    P + +++ F+AG V   K+ + ER+L+RA RG
Sbjct:    4 MFRSEEVALVQLFLPTAAAYTCVSRLGELGLVEFRDLNASVSAFQRRFVVDVRRCEELEKTFTFLQEEVRRAGLVLPPPKGRLPAPPPRDLLRIQEETERLAQELRDVRGNQQALRAQLHQLQLHAAVLRQGHEPQLAAAHTDGASER-------------TPLL---QAPGGPHQDLRVNFVAGAVEPHKAPALERLLWRACRG 192          
BLAST of CB293386 vs. ExPASy Swiss-Prot
Match: VPP2_HUMAN (V-type proton ATPase 116 kDa subunit a isoform 2 OS=Homo sapiens GN=ATP6V0A2 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.944e-20
Identity = 72/214 (33.64%), Postives = 116/214 (54.21%), Query Frame = 3
Query:  147 LFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGI-LSSVKSTTRADNNTDDLEV--KLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGE--MTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQA 773
            LFRSE M L Q+ +   +A+  +S LGE GL+QF+DLN   S FQR +  ++K+C E+ R L +  +++ +A I L   +++  A      LE+  +L  LE EL E+  N +KL++   EL+EY  +L+    F           +R +E + T E   ++E+  L D   S       KLGF++GL+ + K  +FE+ML+R  +G   +  A
Sbjct:    4 LFRSETMCLAQLFLQSGTAYECLSALGEKGLVQFRDLNQNVSSFQRKFVGEVKRCEELERILVYLVQEINRADIPLPEGEASPPAPPLKQVLEMQEQLQKLEVELREVTKNKEKLRKNLLELIEYTHMLRVTKTFV----------KRNVEFEPTYEEFPSLESDSLLD--YSCMQRLGAKLGFVSGLINQGKVEAFEKMLWRVCKGYTIVSYA 205          
BLAST of CB293386 vs. ExPASy Swiss-Prot
Match: VPP2_BOVIN (V-type proton ATPase 116 kDa subunit a isoform 2 OS=Bos taurus GN=ATP6V0A2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.185e-19
Identity = 68/215 (31.63%), Postives = 113/215 (52.56%), Query Frame = 3
Query:  147 LFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRAD---NNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEM---SADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQA 773
            LFRSE M L Q+ +   +A+  +S LGE GL++F+DLN   S FQR +  ++K+C E+ R L +  +++ +A I      T+          +++ +L  LE EL E+  N +KL++   EL+EY  +L+    F           +R +E + T E   E P L ++ +   S       KLGF++GL+ + K  +FE+ML+R  +G   +  A
Sbjct:    4 LFRSETMCLAQLFLQSGTAYECLSVLGEKGLVEFRDLNQNVSSFQRKFVGEVKRCEELERILAYLVQEINRADIPLPEGDTSPPAPPLKQVLEMQEQLQKLEVELREVTKNKEKLRKNLLELIEYTHMLRVTKTFV----------KRNVEFEPTYE---EFPPLENESLLDYSCMQRLGAKLGFVSGLINQGKVEAFEKMLWRVCKGYTIVTYA 205          
BLAST of CB293386 vs. ExPASy Swiss-Prot
Match: VPH1_YEAST (V-type proton ATPase subunit a, vacuolar isoform OS=Saccharomyces cerevisiae GN=VPH1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.731e-16
Identity = 59/224 (26.34%), Postives = 105/224 (46.88%), Query Frame = 3
Query:  147 LFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTR------------ADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSK-----QIKLGFIAGLVPREKSMSFERMLFRATRGNVFLR 767
            +FRS  M LVQ  IP E +  +   LG+LGL+QF+DLNS+   FQRT+  +I++   + R+ R+F   + K  I      T +            + +  DD       LE  L+++    D+++   ++L +Y+ +LQ   EFF                   G+ T  T  + +  + A+           + ++ G++ R+K  + E++L+R  RGN+F +
Sbjct:    8 IFRSAEMALVQFYIPQEISRDSAYTLGQLGLVQFRDLNSKVRAFQRTFVNEIRRLDNVERQYRYFYSLLKKHDIKLYEGDTDKYLDGSGELYVPPSGSVIDDYVRNASYLEERLIQMEDATDQIEVQKNDLEQYRFILQSGDEFFLK-----------------GDNTDSTSYMDEDMIDANGENIAAAIGASVNYVTGVIARDKVATLEQILWRVLRGNLFFK 214          
BLAST of CB293386 vs. ExPASy Swiss-Prot
Match: VPH1_SCHPO (V-type proton ATPase subunit a OS=Schizosaccharomyces pombe GN=vph1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.338e-14
Identity = 54/204 (26.47%), Postives = 95/204 (46.57%), Query Frame = 3
Query:  213 VSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGI------LSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQ--TGEMTIETPLL----------TDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQ 770
            +S LGEL  + FKDLN +   FQR++  +I++  +  R LR+   ++   GI      L     +    +  +D+  ++  LEA + ++  +   L+  + + +E+  VL KA  FFS +  +    +   E+    +GE     PL+          T       P     L F++G++P  K    ER+L+R  RGN+F+ Q
Sbjct:    1 MSALGELSTIHFKDLNPDVVAFQRSFVREIRRLTDTERLLRYLHSEIDLNGIHVPDHNLPPSYESVLESSTIEDIIERITRLEARVRQLVESSQLLEARYLQQLEFANVLTKADAFFSKSGNTVDPLRNNYETSSIFSGEDDTTAPLIENALELGTTGTFDSEETSPQMNTTLDFVSGIIPTVKFQFLERILWRTLRGNLFIHQ 204          
The following BLAST results are available for this feature:
BLAST of CB293386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VPP4_HUMAN2.016e-2736.19V-type proton ATPase 116 kDa subunit a isoform 4 O... [more]
VPP4_MOUSE8.469e-2633.79V-type proton ATPase 116 kDa subunit a isoform 4 O... [more]
VPH1_NEUCR3.218e-2533.78V-type proton ATPase subunit a OS=Neurospora crass... [more]
VPP2_MOUSE6.281e-2133.49V-type proton ATPase 116 kDa subunit a isoform 2 O... [more]
VPP3_HUMAN5.317e-2031.71V-type proton ATPase 116 kDa subunit a isoform 3 O... [more]
VPP2_HUMAN6.944e-2033.64V-type proton ATPase 116 kDa subunit a isoform 2 O... [more]
VPP2_BOVIN1.185e-1931.63V-type proton ATPase 116 kDa subunit a isoform 2 O... [more]
VPH1_YEAST2.731e-1626.34V-type proton ATPase subunit a, vacuolar isoform O... [more]
VPH1_SCHPO3.338e-1426.47V-type proton ATPase subunit a OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ab05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ab05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293386 ID=CB293386; Name=CB293386; organism=Citrus sinensis; type=EST; length=781bp
GCCCATAAGGATCCCCTGNCCGNGCATGTTACTGATAGAGACCTAGCGAG
GAGCTGATTGAACCGAATCAAATCAAATCGGACGGCCAGGAGGAGATGGC
GGAGTTACAATCAGGAGGCGGCGGAGGATGCTGCCCGCCGATGGATCTGT
TCCGGTCGGAGCCGATGCAATTGGTCCAAATCATCATCCCTATTGAATCC
GCTCACCTCACTGTCTCTTACCTCGGCGAACTCGGCTTGCTTCAGTTTAA
AGACTTAAACTCAGAGAAGAGCCCGTTTCAGCGAACTTATGCCGCTCAGA
TAAAAAAATGTGCAGAGATGGCACGCAAGTTACGTTTTTTCAAGGAGCAA
ATGCTAAAGGCAGGTATATTATCTTCAGTAAAGTCTACGACAAGAGCTGA
CAACAATACGGATGACTTAGAGGTAAAACTTGGAGACCTCGAGGCAGAGC
TGGTTGAAATTAATGCAAATGGAGATAAACTGCAACGGGCACACAGTGAG
CTTGTGGAATATAAGCTTGTTCTGCAGAAGGCTGGTGAGTTTTTTTCTTC
TGCACTAACCAGTGCTGCAGCTCAGCAGAGAGAAATGGAATCTCAACAAA
CTGGTGAAATGACTATAGAAACCCCTTTACTTACAGATAAAGAAATGTCA
GCTGATCCATCAAAACAAATAAAATTGGGCTTTATTGCTGGCCTTGTTCC
TAGAGAAAAATCTATGTCATTTGAGAGGATGCTATTTCGTGCTACTAGGG
GCAATGTGTTTTTGAGGCAAGCTGTTGTTGA
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