CB293393

Overview
NameCB293393
Unique NameCB293393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig304 contig Csv1_Contig304:1..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293393 vs. ExPASy Swiss-Prot
Match: NFYC_DICDI (Nuclear transcription factor Y subunit gamma OS=Dictyostelium discoideum GN=nfyc-1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.490e-30
Identity = 59/96 (61.46%), Postives = 79/96 (82.29%), Query Frame = 1
Query:  505 SFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 792
            SFW++Q ++I K  DFK H LPLARIKKIMK+D+DV  IS+EAP++FA+ACE+ ILE+T RSW HTE NKRRTLQ+ DI  +++R + FDFL+D++
Sbjct:  251 SFWSSQLRDIHKTEDFKTHELPLARIKKIMKSDKDVNKISSEAPILFAKACEILILEMTHRSWVHTEMNKRRTLQRTDIINSLSRCETFDFLIDML 346          
BLAST of CB293393 vs. ExPASy Swiss-Prot
Match: HAP5_YEAST (Transcriptional activator HAP5 OS=Saccharomyces cerevisiae GN=HAP5 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.228e-29
Identity = 62/103 (60.19%), Postives = 78/103 (75.73%), Query Frame = 1
Query:  508 FWANQYQEIEKVN--------DFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 792
            +W     EIE  N        DFK+HSLP ARI+K+MK DEDV+MISAEAP+IFA+ACE+FI ELT+R+W   E NKRRTLQK DIA A+ ++D+FDFL+D+V
Sbjct:  133 YWQELINEIESTNEPGSEHQDDFKSHSLPFARIRKVMKTDEDVKMISAEAPIIFAKACEIFITELTMRAWCVAERNKRRTLQKADIAEALQKSDMFDFLIDVV 235          
BLAST of CB293393 vs. ExPASy Swiss-Prot
Match: NFYC6_ARATH (Nuclear transcription factor Y subunit C-6 OS=Arabidopsis thaliana GN=NFYC6 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.218e-28
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 1
Query:  505 SFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 792
            ++W  Q   +E V+DFKN  LPLARIKKIMKAD DV M+SAEAP+IFA+ACEMFI++LT+RSW   EENKR TLQK+DI+ A+  +  +DFL+D+V
Sbjct:   38 NYWIEQ---METVSDFKNRQLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIVDLTMRSWLKAEENKRHTLQKSDISNAVASSFTYDFLLDVV 130          
BLAST of CB293393 vs. ExPASy Swiss-Prot
Match: NFYC8_ARATH (Nuclear transcription factor Y subunit C-8 OS=Arabidopsis thaliana GN=NFYC8 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.763e-26
Identity = 55/94 (58.51%), Postives = 76/94 (80.85%), Query Frame = 1
Query:  505 SFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 786
            SFW+   +E+E   DFKNH LP+ RIKKIMK D DV MI++EAP++ ++ACEMFI++LT+RSW H +E+KR TLQK+++ AA+ +T IFDFL+D
Sbjct:   20 SFWS---KEMEGNLDFKNHDLPITRIKKIMKYDPDVTMIASEAPILLSKACEMFIMDLTMRSWLHAQESKRVTLQKSNVDAAVAQTVIFDFLLD 110          
BLAST of CB293393 vs. ExPASy Swiss-Prot
Match: HAP5_SCHPO (Transcriptional activator hap5 OS=Schizosaccharomyces pombe GN=hap5 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.234e-21
Identity = 49/98 (50.00%), Postives = 74/98 (75.51%), Query Frame = 1
Query:  508 FWANQYQEIEKVND-FKNHSLPLARIKKIMKADEDVR--MISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 792
            +W      +E  +   K   LPLARIKK+MK D+DV+  MISAEAP +FA+  E+FI ELT+R+W H ++N+RRTLQ++DIA A+++++++DFL+DI+
Sbjct:   89 YWQKTIDTLEHDDQAVKTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHAKKNQRRTLQRSDIANAVSKSEMYDFLIDII 186          
BLAST of CB293393 vs. ExPASy Swiss-Prot
Match: NFYC5_ARATH (Nuclear transcription factor Y subunit C-5 OS=Arabidopsis thaliana GN=NFYC5 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.810e-21
Identity = 48/96 (50.00%), Postives = 72/96 (75.00%), Query Frame = 1
Query:  505 SFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 792
            SFW+   + +E   + KNH  P++RIK+IMK D DV MI+AEAP + ++ACEMF+++LT+RSW H +E+ R T++K+D+ A +++T IFDFL D V
Sbjct:   20 SFWS---KGMEGDLNVKNHEFPISRIKRIMKFDPDVSMIAAEAPNLLSKACEMFVMDLTMRSWLHAQESNRLTIRKSDVDAVVSQTVIFDFLRDDV 112          
BLAST of CB293393 vs. ExPASy Swiss-Prot
Match: NFYC7_ARATH (Nuclear transcription factor Y subunit C-7 OS=Arabidopsis thaliana GN=NFYC7 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.566e-19
Identity = 49/102 (48.04%), Postives = 71/102 (69.61%), Query Frame = 1
Query:  505 SFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQ------KNDIAAAITRTDIFDFLVDIV 792
            ++W  Q   +    D K+H+ PL RIKKIMK++ +V M++AEAPV+ ++ACEM IL+LT+RSW HT E  R+TL+      ++DI+AA TR+  F FL D+V
Sbjct:   47 NYWIAQ---MGNATDVKHHAFPLTRIKKIMKSNPEVNMVTAEAPVLISKACEMLILDLTMRSWLHTVEGGRQTLKRSDTLTRSDISAATTRSFKFTFLGDVV 145          
BLAST of CB293393 vs. ExPASy Swiss-Prot
Match: NFYCA_ARATH (Nuclear transcription factor Y subunit C-10 OS=Arabidopsis thaliana GN=NFYC10 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.556e-17
Identity = 42/96 (43.75%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  508 FWANQYQEIEKVNDFKNHS-LPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 792
            FW NQ    E++ +F   + LPL+R++KI+K+D +V+ IS + P +F++ACE FILE+TLR+W HT+   R T+++ DI  A+  +  +DFL+D V
Sbjct:   51 FWNNQR---EQLGNFAGQTHLPLSRVRKILKSDPEVKKISCDVPALFSKACEYFILEVTLRAWMHTQSCTRETIRRCDIFQAVKNSGTYDFLIDRV 143          
The following BLAST results are available for this feature:
BLAST of CB293393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYC_DICDI4.490e-3061.46Nuclear transcription factor Y subunit gamma OS=Di... [more]
HAP5_YEAST2.228e-2960.19Transcriptional activator HAP5 OS=Saccharomyces ce... [more]
NFYC6_ARATH3.218e-2862.50Nuclear transcription factor Y subunit C-6 OS=Arab... [more]
NFYC8_ARATH8.763e-2658.51Nuclear transcription factor Y subunit C-8 OS=Arab... [more]
HAP5_SCHPO2.234e-2150.00Transcriptional activator hap5 OS=Schizosaccharomy... [more]
NFYC5_ARATH3.810e-2150.00Nuclear transcription factor Y subunit C-5 OS=Arab... [more]
NFYC7_ARATH3.566e-1948.04Nuclear transcription factor Y subunit C-7 OS=Arab... [more]
NFYCA_ARATH2.556e-1743.75Nuclear transcription factor Y subunit C-10 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ab11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ab11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293393 ID=CB293393; Name=CB293393; organism=Citrus sinensis; type=EST; length=794bp
CCGGGCTGAAGGAATTCGGCCCTATGAGTACGTTCCTAAGAAAATTTTAG
AAAAGGAAAAAACTCATTAATCGTTCCGAAAAACAAAAACTAAAAAGAAA
GAGAAAAAAAAATAAAAATCCCTTGATTCTCTCAAAACCCTAAAAGGGGA
AGGTTATATTTTCCAAAATCGGATCTTTTTATTTCATTCTTTCACTGGTT
TCAATCTGGGTGAAGGAGGAAAAAGCAAAAGAATCAGAAAAGTTGGATTA
GTATGGATCGGCAAGGACATGGTGGACAACCCACGTCTATGGGGTTGGTT
GGTAGTGGAGCTCAAGTGCCATACGGCACAAACCCGTATCAACAGAATCA
AATGGCTGGCGGTCCCAACCCTGGCCCAGCTGTCACATCAGTTGGGGCAA
TTCAATCTACTAGTCAGCCAGGAGGTGCTCAGCTTGCACAACACCAACTT
GCCTATCAACAAATTCATCACCAGCAGCAACAGCAGCTTCAGCAACAACT
CCAGTCTTTTTGGGCCAATCAGTACCAAGAAATTGAAAAGGTTAATGATT
TCAAGAATCATAGCCTTCCTTTAGCAAGGATCAAGAAAATCATGAAGGCC
GATGAGGATGTGAGAATGATATCAGCTGAGGCACCTGTTATATTTGCAAG
GGCATGTGAAATGTTCATCTTGGAATTGACGCTGCGTTCCTGGAACCACA
CTGAAGAGAACAAGAGGAGGACACTCCAAAAGAATGACATTGCGGCAGCA
ATAACTAGGACTGATATATTTGATTTCTTGGTTGACATTGTGCC
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