CB293395

Overview
NameCB293395
Unique NameCB293395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2079 contig Csv1_Contig2079:25..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.260e-38
Identity = 99/234 (42.31%), Postives = 136/234 (58.12%), Query Frame = 1
Query:   67 LSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQL--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVL 759
            L  +  G+P  SD ++ +  +  LK  E     VLL+ LYL+ DPYMR  M+K        S   G+ + G  VA+V++S +  +    +V   +GW  +S+    +L  ++      +PLS   G +GMPG+TAY GL ++C  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD A NYK    L+ ALK   P+G D YF+NVGG+  +  +
Sbjct:    9 LKKHFVGYPTNSDFELKTVELPPLKDGE-----VLLEALYLTVDPYMRI-MAK--------SLKEGDMMMGEQVARVVESKNSAFPTGTIVLAPSGWTTHSISNGEKLEKVLAEWPDTLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKVAWLK-KHGFDVALNYKTVKSLEEALKEAAPEGYDCYFDNVGGEFSNVAI 227          
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 7.262e-38
Identity = 97/234 (41.45%), Postives = 135/234 (57.69%), Query Frame = 1
Query:   67 LSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQLL-IKIQHTD-VPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLL 762
            L  +  GFP +S+ ++ +     ++   +   VLL+ L+LS DPYMR    KL           G+ + G  VA+V++S +  +    +V    GW  +S+     L  +  +  D +PLS   G +GMPG+TAY GL ++C  K GE V V+AA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD AFNYK    L+ AL+   P G D YF+NVGG+  + V+L
Sbjct:    9 LKKHFEGFPTDSNFELRT----TELPPLNNGEVLLEALFLSVDPYMRVAAKKLKE---------GDSMMGEQVARVVESKNSAFPTGTIVVALLGWTSHSISDGNGLRKLPAEWPDKLPLSLALGTVGMPGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNTVIL 228          
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: PTGR2_BOVIN (Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.162e-29
Identity = 83/242 (34.30%), Postives = 131/242 (54.13%), Query Frame = 1
Query:   55 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQLLIKI--QHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVL 759
            +RV+L++     G P   + ++   ++   V EG    V ++ LYLS DPYMR RM++     ++  +   + ++G GV  + +S H N+ K D V       +  ++    +L K+  Q  D  LSY+ G +GMPG+T+  G+ E    +    + + VS A+GA G L GQ  +L GC  VVG  G+ EK   L ++ GFD A NYK E ++   L +  P G+D+YF+NVGG + D V+
Sbjct:    4 QRVVLNSRPGKNGHPVAENFRVEEVNLPDCVNEGQ---VQVRTLYLSVDPYMRCRMNEDTGSDYITPWQLSQVVDGGGVGIIEESKHTNFMKGDFVTSFYWPWQTKVILDGNILEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHITAGSNQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGTPEKCLFLTSELGFDAAINYK-EGNVAEQLHKLCPAGVDVYFDNVGGDISDTVI 241          
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: PTGR2_PONAB (Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.518e-27
Identity = 80/242 (33.06%), Postives = 129/242 (53.31%), Query Frame = 1
Query:   55 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQLLIKI--QHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVL 759
            +RV+L++     G P   + ++    +   + EG    V ++ LYLS DPYMR RM++     ++  +   + ++G G+  + +S H N  K D V       +  ++     L K+  Q  D  LSY+ G +GMPG+T+  G+ E    +    + + VS A+GA G + GQ   L GC  VVG  G+ EK  LL ++ GFD A NYK++ ++   L+   P G+D+YF+NVGG + D V+
Sbjct:    4 QRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQ---VQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHLLGCSRVVGICGTHEKCVLLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISDTVI 241          
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: PTGR2_HUMAN (Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.416e-27
Identity = 79/242 (32.64%), Postives = 128/242 (52.89%), Query Frame = 1
Query:   55 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQLLIKI--QHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVL 759
            +RV+L++     G P   + ++    +   + EG    V ++ LYLS DPYMR RM++     ++  +   + ++G G+  + +S H N  K D V       +  ++     L K+  Q  D  LSY+ G +GMPG+T+  G+ E    +    + + VS A+GA G + GQ     GC  VVG  G+ EK  LL ++ GFD A NYK++ ++   L+   P G+D+YF+NVGG + D V+
Sbjct:    4 QRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQ---VQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISDTVI 241          
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: PTGR2_RAT (Prostaglandin reductase 2 OS=Rattus norvegicus GN=Ptgr2 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.738e-26
Identity = 81/242 (33.47%), Postives = 127/242 (52.48%), Query Frame = 1
Query:   55 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWG-STGWEEYSLVTAPQL-LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVL 759
            +RV+L +     G P   + ++   S+   + EG    V ++ LYLS DPYMR +M++     ++  +   +  +G G+  + +S H   AK D V      W+  +++    L  +  Q  D  LSY+ G +GMPG+T+  G+ E    S    + + VS A+GA G L GQ   L GC  VVG  G+ EK   L ++ GFD A NYK   ++   L+   P G+D+YF+NVGG + +AV+
Sbjct:    4 QRVVLDSRPGKNGNPVAENFRVEEVSLPDTINEGQ---VRVRTLYLSVDPYMRCKMNEETGADYLAPWQLAQVADGGGLGVIEESKHQKLAKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHVSAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTHEKCLFLTSELGFDAAVNYK-TGNVAEQLREACPDGVDVYFDNVGGDISNAVI 241          
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: PTGR2_MOUSE (Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 8.328e-26
Identity = 81/242 (33.47%), Postives = 128/242 (52.89%), Query Frame = 1
Query:   55 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWG-STGWEEYSLVTAPQL-LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVL 759
            +RV+L++     G P   + ++   S+   + EG    V ++ LYLS DPYMR +M++     ++  +   +  +G G+  V +S H    K D V      W+  +++    L  +  Q  D  LSY+ G +GMPG+T+  G+ E    S    + + VS A+GA G L GQ   L GC  VVG  G++EK   L ++ GFD A NYK   ++   L+   P G+D+YF+NVGG + +AV+
Sbjct:    4 QRVVLNSRPGKNGNPVAENFRVEEFSLPDALNEGQ---VQVRTLYLSVDPYMRCKMNEDTGTDYLAPWQLAQVADGGGIGVVEESKHQKLTKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYK-TGNVAEQLREACPGGVDVYFDNVGGDISNAVI 241          
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: ZADH2_MOUSE (Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Mus musculus GN=Zadh2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.507e-16
Identity = 51/131 (38.93%), Postives = 76/131 (58.02%), Query Frame = 1
Query:  358 EYSLVTAPQLLIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLD 750
            EY++V A    I I    V   Y T ++   G TAY  L E+    +G+ V V+AA+G  GQ   Q +K+A C+V+G+  S EK   LK+  G D   NY+ EP ++  LK+ +P+G+D+ +E+VGG M D
Sbjct:  131 EYTVVPAS---IAIPMPSVKPEYLTMLVS--GTTAYLSLEELGELSEGKKVLVTAAAGGTGQFAVQLSKIAKCHVIGTCSSDEKAAFLKS-IGCDRPINYRTEP-VETVLKQEYPEGVDVVYESVGGAMFD 254          
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: ZADH2_HUMAN (Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Homo sapiens GN=ZADH2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15
Identity = 49/126 (38.89%), Postives = 71/126 (56.35%), Query Frame = 1
Query:  400 QHTDVPLSYYTGI---------LGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLD 750
            ++T VP S  T +         L + G TAY  L E+    +G+ V V+AA+G  GQ   Q +K A C+V+G+  S EK   LK+  G D   NYK EP +   LK+ +P+G+D+ +E+VGG M D
Sbjct:  131 EYTVVPASIATPVPSVKPEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-LGCDRPINYKTEP-VGTVLKQEYPEGVDVVYESVGGAMFD 254          
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: ZADH2_BOVIN (Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Bos taurus GN=ZADH2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.128e-13
Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:  451 GVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLD 750
            G TAY  L E+    +G+ V V+AA+G  GQ   Q AK A C+V+G+  S EK   LK+  G D   NY  E  +   L++ +PQG+D+ +E+VGG M D
Sbjct:  157 GTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAVQLAKKAKCHVIGTCSSAEKSAFLKS-VGCDRPINYNTE-HVGTVLRQEYPQGVDVVYESVGGAMFD 254          
The following BLAST results are available for this feature:
BLAST of CB293395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PTGR1_BOVIN3.260e-3842.31Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
PTGR1_RAT7.262e-3841.45Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]
PTGR2_BOVIN6.162e-2934.30Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 P... [more]
PTGR2_PONAB1.518e-2733.06Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2... [more]
PTGR2_HUMAN4.416e-2732.64Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2... [more]
PTGR2_RAT3.738e-2633.47Prostaglandin reductase 2 OS=Rattus norvegicus GN=... [more]
PTGR2_MOUSE8.328e-2633.47Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2... [more]
ZADH2_MOUSE3.507e-1638.93Zinc-binding alcohol dehydrogenase domain-containi... [more]
ZADH2_HUMAN5.064e-1538.89Zinc-binding alcohol dehydrogenase domain-containi... [more]
ZADH2_BOVIN2.128e-1342.00Zinc-binding alcohol dehydrogenase domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ab12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ab12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293395 ID=CB293395; Name=CB293395; organism=Citrus sinensis; type=EST; length=767bp
GCCCGTTGAAGAAACTGAGAAACAATGGCGGCTGAACAAGAACCTTTGAG
CAATAAGCGGGTGATTCTGAGCAACTATGTGACAGGTTTTCCAAAAGAAT
CAGACATGAAGATAACAAGTGGATCAATAAAGCTGAAGGTAGCAGAGGGT
TCAAAAGACACAGTGCTTTTGAAGAATCTTTATCTTTCTTGTGATCCTTA
CATGCGATGGCGTATGAGCAAGCTTGATAGACCTTCTTTTGTTGATTCAT
TCCATCCTGGTGAGCCTATAAATGGTTATGGGGTAGCTAAAGTTTTGGAT
TCTACACATCCAAATTATGCAAAAGATGACTTGGTTTGGGGCTCCACCGG
GTGGGAGGAGTACAGTCTCGTTACAGCCCCACAGCTTTTGATTAAAATTC
AGCATACAGATGTGCCCCTTTCATACTATACTGGAATCCTTGGTATGCCT
GGTGTGACTGCATACGCTGGTTTATACGAAGTTTGCTCTCCGAAGAAAGG
TGAGTACGTCTATGTATCTGCAGCATCTGGAGCTGTTGGTCAGCTTGTTG
GCCAATTTGCAAAATTGGCTGGTTGCTATGTTGTTGGAAGTGCTGGAAGC
AAAGAAAAGGTCGATTTGTTGAAGAACAAGTTTGGATTTGATGATGCTTT
TAACTACAAGCAAGAGCCAGACTTGGATGCAGCACTCAAAAGATGCTTCC
CTCAAGGAATCGACATATATTTCGAAAACGTTGGGGGAAAGATGCTGGAC
GCAGTGCTACTCAACAT
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