CB293396

Overview
NameCB293396
Unique NameCB293396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293396 vs. ExPASy Swiss-Prot
Match: MCFB_DICDI (Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.474e-13
Identity = 44/144 (30.56%), Postives = 72/144 (50.00%), Query Frame = -1
Query:  341 YSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFLASFLLGWGITIGAGLASYPIDTVRRRMMM--TSGEAVKYKSSLHAFQEIIKNEGTKSLFKG 766
            Y LD  R+RL       K      +NG+ D  K  ++ +G+AGLY+G   S +G+  Y  + F  Y++LK   +      + + S   G      A   +YPID +RRR+ +    G+ + Y  +  AF++II++EG   L+ G
Sbjct:  260 YPLDLIRSRLTVQVFGNK------YNGIADTCKMIIREEGVAGLYKGLFASALGVAPYVAINFTTYENLKKTFIPKDTTPTVVQSLTFGAISGATAQTLTYPIDLIRRRLQVQGIGGKDILYNGTFDAFRKIIRDEGVLGLYNG 397          
BLAST of CB293396 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.741e-12
Identity = 53/157 (33.76%), Postives = 78/157 (49.68%), Query Frame = -1
Query:  320 FVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFL--ASFLLGWGI---TIGAGLASYPIDTVRRRMM-MTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILR 772
            F+Y ++  +TRLA     AK G   Q++G+    KK LK +G    Y+G+  + +GII Y G+   +Y+ LK   L +  +DS       LL  G    T G  LASYP+  VR RM    + E     S +  FQ I+  EG   L++G   N ++
Sbjct:  303 FIYPMEVLKTRLA----VAKTG---QYSGIYGCAKKILKHEGFGAFYKGYIPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPGVMVLLSCGALSSTCGQ-LASYPLALVRTRMQAQATVEGAPQLSMVGLFQRIVSKEGVSGLYRGITPNFMK 451          
BLAST of CB293396 vs. ExPASy Swiss-Prot
Match: TPC_MOUSE (Mitochondrial thiamine pyrophosphate carrier OS=Mus musculus GN=Slc25a19 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.191e-12
Identity = 44/162 (27.16%), Postives = 80/162 (49.38%), Query Frame = -1
Query:  320 VYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKP----VVLTDGMQDSFLASFLLGWGITIGAGLASYPIDTVRRRMMM--------TSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILR 769
            V+ +D  RTRLA       +G  + +N L +  +   K++G    Y+G + + + I  Y GL F  Y SLK     ++  DG Q   L + L G G  + +   +YP+D +++R+ +          G+   Y+  L   Q++++ EGT+  FKG   ++++
Sbjct:  136 VHPVDVLRTRLA------AQGEPKIYNNLREAIRTMYKTEGPFVFYKGLTPTVIAIFPYAGLQFSCYRSLKRAYDWLIPPDGKQTGNLKNLLCGCGSGVISKTFTYPLDLIKKRLQVGGFEHARSAFGQVRSYRGLLDLTQQVLQEEGTRGFFKGLSPSLMK 291          
BLAST of CB293396 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.191e-12
Identity = 52/157 (33.12%), Postives = 79/157 (50.32%), Query Frame = -1
Query:  320 FVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFL--ASFLLGWGI---TIGAGLASYPIDTVRRRMMMTSG-EAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILR 772
            F+Y ++  +TRLA        G   Q++G+ D  KK LK +G+   Y+G+  + +GII Y G+   +Y+ LK   L +  +DS       LLG G    T G  LASYP+  VR RM   +  E     + +  F+ II  EG   L++G   N ++
Sbjct:  305 FIYPMEVMKTRLA-------VGKTGQYSGIYDCAKKILKHEGLGAFYKGYVPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPGVMVLLGCGALSSTCGQ-LASYPLALVRTRMQAQAMLEGSPQLNMVGLFRRIISKEGIPGLYRGITPNFMK 453          
BLAST of CB293396 vs. ExPASy Swiss-Prot
Match: SCM1B_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-B PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.191e-12
Identity = 47/155 (30.32%), Postives = 78/155 (50.32%), Query Frame = -1
Query:  320 VYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFLASFLL----GWGITIGAGLASYPIDTVRRRMM-MTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILR 769
            +Y ++  +TRLA        G   Q++G+ D  KK ++ +GI   Y+G+  + +GII Y G+   +Y++LK   L +  +DS     L+    G   +    LASYP+  +R RM    S E     +    F++I+  EG   L++G G N L+
Sbjct:  305 IYPMEVLKTRLA-------VGRTGQYSGMFDCAKKIMQKEGIRAFYKGYIPNILGIIPYAGIDLAIYETLKNYWLQNHAKDSANPGVLVLLGCGTASSTCGQLASYPLALIRTRMQAQASIEGAPQLNMGGLFRKIVAKEGFLGLYRGIGPNFLK 452          
BLAST of CB293396 vs. ExPASy Swiss-Prot
Match: S2542_XENTR (Solute carrier family 25 member 42 OS=Xenopus tropicalis GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 47/149 (31.54%), Postives = 71/149 (47.65%), Query Frame = -1
Query:  329 YSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVL--TDGMQDSFLASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGT-KSLFKGAGAN 766
            Y LD  R R+A   K         ++ +I V+ +  + +G+  LYRGF+ + +G+I Y G+ F  Y++LK +    +   Q       L G    +    ASYP+D VRRRM         Y S +   QEI+  EG  + L+KG   N
Sbjct:  153 YPLDLVRARMAVTPK-------EMYSNIIHVFMRMSREEGLKSLYRGFTPTVLGVIPYAGISFFTYETLKKLHAEHSGRTQPYPFERLLFGACAGLFGQSASYPLDVVRRRMQTAGVTGHAYGSIIGTMQEIVAEEGVIRGLYKGLSMN 294          
BLAST of CB293396 vs. ExPASy Swiss-Prot
Match: SCMC1_RABIT (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.379e-11
Identity = 52/157 (33.12%), Postives = 78/157 (49.68%), Query Frame = -1
Query:  320 FVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFLAS--FLLGWGI---TIGAGLASYPIDTVRRRMMMTSG-EAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILR 772
            F+Y ++  +TRLA        G   Q++G+ D  KK LK +G    Y+G+  + +GII Y G+   +Y+ LK   L +  +DS       LLG G    T G  LASYP+  VR RM   +  E     + +  F+ II  EG   L++G   N ++
Sbjct:  303 FIYPMEVMKTRLA-------VGKTGQYSGIYDCAKKILKYEGFGAFYKGYVPNLLGIIPYAGIDLAVYELLKSHWLDNFAKDSVNPGVLVLLGCGALSSTCGQ-LASYPLALVRTRMQAQAMLEGAPQLNMVGLFRRIISKEGLPGLYRGITPNFMK 451          
BLAST of CB293396 vs. ExPASy Swiss-Prot
Match: S2542_XENLA (Solute carrier family 25 member 42 OS=Xenopus laevis GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.801e-11
Identity = 46/149 (30.87%), Postives = 71/149 (47.65%), Query Frame = -1
Query:  329 YSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVL--TDGMQDSFLASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEG-TKSLFKGAGAN 766
            Y LD  R R+A   K         ++ +I V+ +  + +G+  LYRGF+ + +G+I Y G+ F  Y++LK +    +   Q       L G    +    +SYP+D VRRRM         Y S +   QEI+  EG  + L+KG   N
Sbjct:  153 YPLDLVRARMAVTQK-------EMYSNIIHVFMRMSREEGLKSLYRGFTPTVLGVIPYAGISFFTYETLKKLHAEHSGRTQPYTFERLLFGACAGLFGQSSSYPLDVVRRRMQTAGVTGHTYGSIIGTMQEIVAEEGFIRGLYKGLSMN 294          
BLAST of CB293396 vs. ExPASy Swiss-Prot
Match: MCFX_DICDI (Mitochondrial substrate carrier family protein X OS=Dictyostelium discoideum GN=mcfX PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.801e-11
Identity = 52/158 (32.91%), Postives = 83/158 (52.53%), Query Frame = -1
Query:  320 VYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSD-GIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFLASFLLGWGITIGAGL-------ASYPIDTVRRRMMMTSGEAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILR 769
            V+ LD+ +TRL     +    G +Q+NG+ID +KK +K++ G+ GLYRG S + +GII  + L   M D  +     D        S++  W      GL       A+ P++ V+ RM + SG + K K+SL   +E++   G K L+KG  + +LR
Sbjct:   38 VFPLDFVKTRLQQQRVSID--GSKQYNGIIDCFKKVIKNEGGVRGLYRGLSSNLIGIIPEKALKLAMNDYFRTRFQGD-------RSYIKLWEEVASGGLAGMCQVVATNPMELVKIRMQV-SGLSGK-KASL---KEVVSELGIKGLYKGTASTLLR 181          
BLAST of CB293396 vs. ExPASy Swiss-Prot
Match: SCMC1_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Bos taurus GN=SLC25A24 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.073e-11
Identity = 51/157 (32.48%), Postives = 79/157 (50.32%), Query Frame = -1
Query:  320 FVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFL--ASFLLGWGI---TIGAGLASYPIDTVRRRMMMTSG-EAVKYKSSLHAFQEIIKNEGTKSLFKGAGANILR 772
            F+Y ++  +TRLA        G   Q++G+ D  KK LK +G+   Y+G+  + +GII Y G+   +Y+ LK   L +  +DS       LLG G    T G  LASYP+  VR RM   +  E     + +  F+ I+  EG   L++G   N ++
Sbjct:  305 FIYPMEVLKTRLA-------VGKTGQYSGMFDCAKKILKYEGMGAFYKGYVPNLLGIIPYAGIDLAVYELLKSHWLDNFAKDSVNPGVMVLLGCGALSSTCGQ-LASYPLALVRTRMQAQAMIEKSPQLNMVGLFRRILSKEGLPGLYRGITPNFMK 453          
The following BLAST results are available for this feature:
BLAST of CB293396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
MCFB_DICDI1.474e-1330.56Mitochondrial substrate carrier family protein B O... [more]
SCMC1_MOUSE4.741e-1233.76Calcium-binding mitochondrial carrier protein SCaM... [more]
TPC_MOUSE6.191e-1227.16Mitochondrial thiamine pyrophosphate carrier OS=Mu... [more]
SCMC1_HUMAN6.191e-1233.12Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1B_XENLA6.191e-1230.32Calcium-binding mitochondrial carrier protein SCaM... [more]
S2542_XENTR1.056e-1131.54Solute carrier family 25 member 42 OS=Xenopus trop... [more]
SCMC1_RABIT1.379e-1133.12Calcium-binding mitochondrial carrier protein SCaM... [more]
S2542_XENLA1.801e-1130.87Solute carrier family 25 member 42 OS=Xenopus laev... [more]
MCFX_DICDI1.801e-1132.91Mitochondrial substrate carrier family protein X O... [more]
SCMC1_BOVIN3.073e-1132.48Calcium-binding mitochondrial carrier protein SCaM... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06ac01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293396 ID=CB293396; Name=CB293396; organism=Citrus sinensis; type=EST; length=853bp
TTTTTTTTTTTTTTTTTCAGTGAAAACTATTTAAATTATCATTCAACACT
TGAGTCTAGGGCTCAAGCACAAAAACACTCAAATTCAAACAGTTCTTTGA
CGACTATAATCTTTTCTTTTATCAAATCCCTAAAAACCGGATAAATATTA
ATAACACTATCGATCATCCAAAATTATTCAAACTTGAGAAGAGCACCTAT
AGAATTTTCACCAACATCTTGTACAAGTATTAACCGCCACCACCGGATCC
GTATTTCTTGCCAAATAAAACCAGCTGCAGCTTGTCATAACCGGCAAGCA
CACCAGCACCTGCCACAGCACGCAGAATGTTTGCACCAGCACCTTTGAAG
AGTGATTTAGTGCCTTCATTCTTTATAATTTCCTGGAATGCATGCAAAGA
GCTCTTGTACTTCACAGCTTCTCCAGAGGTCATCATCATCCTTCTACGCA
CCGTATCAATTGGGTAAGAAGCCAAACCAGCACCAATTGTGATTCCCCAG
CCAAGTAAGAAGCTAGCCAAGAAACTATCCTGCATCCCATCAGTCAACAC
CACAGGTTTTAGAGAATCGTACATTCCAAAGTAGAGCCCACGATACACTA
TAATTCCAACACATGAGATGCTGAATCCACGGTAGAGCCCAGCAATGCCA
TCAGATTTCAGAGTCTTCTTGTAGACATCAATCAAACCATTAAACTGCCT
TTCCCCACCCTTTTTAGCTGCCTTAGCATCATTTGCCAAACGTGTTCTTG
CATAGTCAAGCGAATACACAAAAAGAAGCGATGAAGCACCAGCAGCCCCA
CCAGATGCCAAGTTCCCAGCAAACCACTTCCAGTAGCCATCTCTGTCTTT
CTT
back to top