CB293397

Overview
NameCB293397
Unique NameCB293397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1975 contig Csv1_Contig1975:19..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293397 vs. ExPASy Swiss-Prot
Match: SCMC1_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Bos taurus GN=SLC25A24 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.100e-15
Identity = 59/196 (30.10%), Postives = 95/196 (48.47%), Query Frame = 3
Query:  183 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGI 770
            FW  S G  +     +   F +   EK    +    L GGV+ AVS+T+ AP++R+K+++Q      KS +++     I   F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA        G   Q++G+ D  KK LK +G+
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--DEKKSGQWWRQLLAGGVAGAVSRTSTAPLDRLKVMMQVHGS--KSAKMN-----IYGGFQQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFVSG----SMAGATAQTFIYPMEVLKTRLA-------VGKTGQYSGMFDCAKKILKYEGM 340          
BLAST of CB293397 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.661e-15
Identity = 58/196 (29.59%), Postives = 95/196 (48.47%), Query Frame = 3
Query:  183 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGI 770
            FW  S G  +     +   F +   EK    +    L GG++ AVS+T+ AP++R+K+++Q      KS +++     I   F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA        G   Q++G+ D  KK LK +G+
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--DEKKSGQWWRQLLAGGIAGAVSRTSTAPLDRLKIMMQVHGS--KSDKMN-----IFGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFISG----SMAGATAQTFIYPMEVMKTRLA-------VGKTGQYSGIYDCAKKILKHEGL 340          
BLAST of CB293397 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.364e-14
Identity = 58/195 (29.74%), Postives = 94/195 (48.21%), Query Frame = 3
Query:  183 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDG 767
            FW  S G  +     +   F +   EK    +    L GGV+ AVS+T+ AP++R+K+++Q     +   +  + + G    F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA     AK G   Q++G+    KK LK +G
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--DEKKSGQWWRQLLAGGVAGAVSRTSTAPLDRLKVMMQ-----VHGSKSMNIFGG----FRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKLGTFERFISG----SMAGATAQTFIYPMEVLKTRLA----VAKTG---QYSGIYGCAKKILKHEG 337          
BLAST of CB293397 vs. ExPASy Swiss-Prot
Match: SCMC1_RABIT (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.256e-13
Identity = 53/195 (27.18%), Postives = 93/195 (47.69%), Query Frame = 3
Query:  183 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDG 767
            FW  S G  +     +   F +   E+    +    L GG++ AVS+T+ AP++R+K+++Q     +   +  + + G    F + +K+ G+ SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA        G   Q++G+ D  KK LK +G
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--EERKSGQWWRQLLAGGIAGAVSRTSTAPLDRLKVMMQ-----VHGSKSMNIFGG----FRQMIKEGGVRSLWRGNGTNVIKIAPETAVKFWVYEQYKKLLTEEGQKIGTFERFISG----SMAGATAQTFIYPMEVMKTRLA-------VGKTGQYSGIYDCAKKILKYEG 337          
BLAST of CB293397 vs. ExPASy Swiss-Prot
Match: SCM1B_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-B PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.814e-12
Identity = 51/174 (29.31%), Postives = 83/174 (47.70%), Query Frame = 3
Query:  258 EKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFG---RTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGI 770
            EK    +    + GG++ AVS+T  AP++R+K+++Q            H  KG S+      + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+LF  +  + G  + F                 +Y ++  +TRLA        G   Q++G+ D  KK ++ +GI
Sbjct:  188 EKKTGQWWKQLMAGGMAGAVSRTGTAPLDRLKVMMQ-----------VHGSKGNSNIITGLKQMVKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFVAGSLAGATAQTS----IYPMEVLKTRLA-------VGRTGQYSGMFDCAKKIMQKEGI 339          
BLAST of CB293397 vs. ExPASy Swiss-Prot
Match: SCM1A_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-A OS=Xenopus laevis GN=slc25a24-A PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12
Identity = 53/175 (30.29%), Postives = 86/175 (49.14%), Query Frame = 3
Query:  258 EKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFG---RTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWF-AGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGI 770
            EK    +    L GG++ AVS+T  AP++R+K+++Q            H  KG S+      + VK+ G+ SLWRGN  NVI+  P  A+ F   + +K+LF  +  + G  + F AG+              +Y ++  +TRLA        G   Q++G+ D  KK ++ +GI
Sbjct:  188 EKKTGQWWKHLLAGGMAGAVSRTGTAPLDRLKVMMQ-----------VHGTKGNSNIITGLKQMVKEGGVRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFIAGSLAGATAQTS-----IYPMEVLKTRLA-------VGKTGQYSGMFDCAKKIMQKEGI 339          
BLAST of CB293397 vs. ExPASy Swiss-Prot
Match: GDC_HUMAN (Graves disease carrier protein OS=Homo sapiens GN=SLC25A16 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12
Identity = 60/201 (29.85%), Postives = 88/201 (43.78%), Query Frame = 3
Query:  189 AASQGTGLALVSPVSPIFVQA-----PSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYK--GISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGY-WKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDG 767
            AA+    LA   P  P   QA     P+ +    +L  FL GG++   +KT  AP++RVK+L+Q  +         H YK  G+        + EG L L++GN A +IR FP  A+ F   +++K L   K    G+  +  AG+               Y LD  R RLA   K     GE  + G+I  +K     +G
Sbjct:    3 AATAAAALAAADP-PPAMPQAAGAGGPTTRRDFYWLRSFLAGGIAGCCAKTTVAPLDRVKVLLQAHN---------HHYKHLGVFSALRAVPQKEGFLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLGISGHVHRLMAGSMAGMTAVIC-----TYPLDMVRVRLAFQVK-----GEHSYTGIIHAFKTIYAKEG 183          
BLAST of CB293397 vs. ExPASy Swiss-Prot
Match: MCFR_DICDI (Mitochondrial substrate carrier family protein R OS=Dictyostelium discoideum GN=mcfR PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.041e-12
Identity = 44/137 (32.12%), Postives = 66/137 (48.18%), Query Frame = 3
Query:  270 SSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLA 680
            +S +V  L GGVS  ++K+  AP+ERVK+L Q + +M       + +  +       +K+EG+  LW+GNTA ++R FP  A+ +   DY K   NF  D+    + F                  Y LD  R RLA
Sbjct:    9 TSPMVTLLAGGVSGVIAKSTIAPLERVKILYQVKSKM-------YSFNSVYGLMKNIIKNEGLAGLWKGNTATILRIFPYSAIQWTSYDYLKN--NFVTDKKSSVQIFIAG----SLGFSCAILLTYPLDVIRARLA 132          
BLAST of CB293397 vs. ExPASy Swiss-Prot
Match: SCMC1_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.278e-12
Identity = 52/175 (29.71%), Postives = 86/175 (49.14%), Query Frame = 3
Query:  258 EKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFG---RTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWF-AGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGI 770
            EK    +    L GG++ AVS+T  AP++R+K+++Q            H  KG ++      + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+LF  +  + G  + F AG+              +Y ++  +TRLA        G   Q++G+ D  KK ++ +G+
Sbjct:  188 EKKTGQWWKQLLAGGMAGAVSRTGTAPLDRLKVMMQ-----------VHGSKGNANIITGLKQMVKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFIAGSLAGATAQTS-----IYPMEVLKTRLA-------VGKTGQYSGMFDCAKKIMQREGV 339          
BLAST of CB293397 vs. ExPASy Swiss-Prot
Match: SCMC1_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Danio rerio GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.893e-12
Identity = 50/172 (29.07%), Postives = 87/172 (50.58%), Query Frame = 3
Query:  258 EKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNF-AFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGI 770
            EK+   +      GGV+ AVS+T  AP++R+K+ +Q      K+ ++S     + + F + +K+ G+ SLWRGN  NVI+  P  A+ F A++ Y K L         + ++ AG+              +Y ++  +TRL       +K G  Q++G+ D  KK L+ +G+
Sbjct:  189 EKTTGMWWKQLAAGGVAGAVSRTGTAPLDRMKVFMQVHSS--KTNKIS-----LVNGFKQMIKEGGVASLWRGNGVNVIKIAPETAIKFMAYEQYKKLLSKDGGKVQSHERFMAGSLAGATAQTA-----IYPMEVMKTRL-----TLRKTG--QYSGMFDCAKKILRKEGV 341          
The following BLAST results are available for this feature:
BLAST of CB293397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
SCMC1_BOVIN5.100e-1530.10Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_HUMAN6.661e-1529.59Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_MOUSE7.364e-1429.74Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_RABIT1.256e-1327.18Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1B_XENLA1.814e-1229.31Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1A_XENLA2.369e-1230.29Calcium-binding mitochondrial carrier protein SCaM... [more]
GDC_HUMAN2.369e-1229.85Graves disease carrier protein OS=Homo sapiens GN=... [more]
MCFR_DICDI4.041e-1232.12Mitochondrial substrate carrier family protein R O... [more]
SCMC1_XENTR5.278e-1229.71Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_DANRE6.893e-1229.07Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293397 ID=CB293397; Name=CB293397; organism=Citrus sinensis; type=EST; length=772bp
GCCCTTAGAGCGACCTTCTCAGGTCACCATCTTCAGCTGCAACTTTGGCA
GATGGATCGTATCCATCCGTATTTCAGAAAATGCAAGGCCAGTCATACTT
CATTTCTGGGGTCTCCCCCAATTTGTATGCCCACAACTACAGTGTGGCAG
GTTCCTTTGTTAATAGAGGATCACAGAATTCTTTTTGGGCAGCAAGTCAG
GGAACTGGCCTGGCACTTGTGTCTCCTGTTTCTCCTATATTCGTACAAGC
TCCATCAGAAAAAAGTCTTTCTTCTTTTTTGGTGGATTTTCTCATGGGAG
GAGTTTCAGCAGCTGTTTCCAAGACTGCAGCTGCTCCTATTGAGCGGGTT
AAGCTTTTGATTCAGAATCAAGATGAGATGATCAAGAGTGGTCGGCTCTC
GCATCCGTACAAGGGGATTTCTGATTGCTTTGGTAGAACTGTTAAGGATG
AAGGCATACTATCTCTTTGGAGAGGCAACACTGCCAATGTTATCAGATAC
TTCCCTACCCAGGCCCTGAACTTTGCATTCAAGGATTACTTTAAGAGGCT
GTTTAACTTCAAGAAAGACAGAGATGGCTACTGGAAGTGGTTTGCTGGGA
ACTTGGCATCTGGTGGGGCTGCTGGTGCTTCATCGCTTCTTTTTGTGTAT
TCGCTTGACTATGCAAGAACACGTTTGGCAAATGATGCTAAGGCAGCTAA
AAAGGGTGGGGAAAGGCAGTTTAATGGTTTGATTGATGTCTACAAGAAGA
CTCTGAAATCTGATGGCATTGC
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