CB293397

Overview
NameCB293397
Unique NameCB293397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1975 contig Csv1_Contig1975:19..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293397 vs. ExPASy Swiss-Prot
Match: GDC_BOVIN (Graves disease carrier protein OS=Bos taurus GN=SLC25A16 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.176e-11
Identity = 59/200 (29.50%), Postives = 87/200 (43.50%), Query Frame = 3
Query:  192 ASQGTGLALVSPVSPIFVQA-----PSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYK--GISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGY-WKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDG 767
            A+    LA   P  P   QA     P+ +    +L  FL GG++   +KT  AP++RVK+L+Q  +         H Y+  G+        K EG L L++GN A +IR FP  A+ F   +++K L   K    G+  +  AG+               Y LD  R RLA   K     GE  + G+I  +K     +G
Sbjct:    2 AAAAAALAATEP-PPAMPQAAGAGGPAARRDFYWLRSFLAGGIAGCCAKTTVAPLDRVKVLLQAHN---------HHYRHLGVFSTLRAVPKKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLGVSGHVHRLMAGSMAGMTAVIC-----TYPLDMVRVRLAFQVK-----GEHTYTGIIHAFKTIYAKEG 181          
BLAST of CB293397 vs. ExPASy Swiss-Prot
Match: S2542_XENTR (Solute carrier family 25 member 42 OS=Xenopus tropicalis GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.835e-11
Identity = 53/190 (27.89%), Postives = 81/190 (42.63%), Query Frame = 3
Query:  201 GTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGI 770
            GT   L SPV      +   K+  S L   + G ++ AV+KTA AP++R K++ Q     + S R S   K       RT  +EG LSLWRGN+A ++R  P  A+ F   + +K+L        G                       Y LD  R R+A   K         ++ +I V+ +  + +G+
Sbjct:   16 GTHAILPSPVV-----SEGHKNHKSILNSLMSGALAGAVAKTAVAPLDRTKIIFQ-----VSSNRFSA--KEAYRLIYRTYLNEGFLSLWRGNSATMVRVIPYAAIQFCAHEQYKKLLGSYYGFQGSALTPIPRLLAGALAGTTATIITYPLDLVRARMAVTPK-------EMYSNIIHVFMRMSREEGL 186          
BLAST of CB293397 vs. ExPASy Swiss-Prot
Match: GDC_MOUSE (Graves disease carrier protein homolog OS=Mus musculus GN=Slc25a16 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.835e-11
Identity = 49/173 (28.32%), Postives = 78/173 (45.09%), Query Frame = 3
Query:  252 PSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGY-WKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDG 767
            P+ +    +L  FL GG++   +KT  AP++RVK+L+Q  +   K       + G+        + EG L L++GN A +IR FP  A+ F   +++K     K    G+  +  AG+               Y LD  R RLA   K     GE  ++G+I  +K     +G
Sbjct:   28 PTSRRDFYWLRSFLAGGIAGCCAKTTVAPLDRVKVLLQAHNRHYK-------HLGVLSTLRAVPQKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTFITTKLGVSGHVHRLMAGSMAGMTAVIC-----TYPLDVVRVRLAFQVK-----GEHTYSGIIHAFKTIYAKEG 183          
The following BLAST results are available for this feature:
BLAST of CB293397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
GDC_BOVIN1.176e-1129.50Graves disease carrier protein OS=Bos taurus GN=SL... [more]
S2542_XENTR5.835e-1127.89Solute carrier family 25 member 42 OS=Xenopus trop... [more]
GDC_MOUSE5.835e-1128.32Graves disease carrier protein homolog OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293397 ID=CB293397; Name=CB293397; organism=Citrus sinensis; type=EST; length=772bp
GCCCTTAGAGCGACCTTCTCAGGTCACCATCTTCAGCTGCAACTTTGGCA
GATGGATCGTATCCATCCGTATTTCAGAAAATGCAAGGCCAGTCATACTT
CATTTCTGGGGTCTCCCCCAATTTGTATGCCCACAACTACAGTGTGGCAG
GTTCCTTTGTTAATAGAGGATCACAGAATTCTTTTTGGGCAGCAAGTCAG
GGAACTGGCCTGGCACTTGTGTCTCCTGTTTCTCCTATATTCGTACAAGC
TCCATCAGAAAAAAGTCTTTCTTCTTTTTTGGTGGATTTTCTCATGGGAG
GAGTTTCAGCAGCTGTTTCCAAGACTGCAGCTGCTCCTATTGAGCGGGTT
AAGCTTTTGATTCAGAATCAAGATGAGATGATCAAGAGTGGTCGGCTCTC
GCATCCGTACAAGGGGATTTCTGATTGCTTTGGTAGAACTGTTAAGGATG
AAGGCATACTATCTCTTTGGAGAGGCAACACTGCCAATGTTATCAGATAC
TTCCCTACCCAGGCCCTGAACTTTGCATTCAAGGATTACTTTAAGAGGCT
GTTTAACTTCAAGAAAGACAGAGATGGCTACTGGAAGTGGTTTGCTGGGA
ACTTGGCATCTGGTGGGGCTGCTGGTGCTTCATCGCTTCTTTTTGTGTAT
TCGCTTGACTATGCAAGAACACGTTTGGCAAATGATGCTAAGGCAGCTAA
AAAGGGTGGGGAAAGGCAGTTTAATGGTTTGATTGATGTCTACAAGAAGA
CTCTGAAATCTGATGGCATTGC
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