CB293409

Overview
NameCB293409
Unique NameCB293409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9531 contig Csv1_Contig9531:1..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 4.420e-38
Identity = 85/167 (50.90%), Postives = 107/167 (64.07%), Query Frame = 2
Query:   56 IVLKSCDGESFEVEEAVALESTTIKHMIED-----DCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 541
            I L+S DGE FEV+  +A +S TIK M+ED     +  D+ +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT--------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.420e-38
Identity = 85/167 (50.90%), Postives = 107/167 (64.07%), Query Frame = 2
Query:   56 IVLKSCDGESFEVEEAVALESTTIKHMIED-----DCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 541
            I L+S DGE FEV+  +A +S TIK M+ED     +  D+ +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT--------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: ASK18_ARATH (SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.679e-37
Identity = 85/168 (50.60%), Postives = 107/168 (63.69%), Query Frame = 2
Query:   38 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFV-KVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAF 538
            MSS K I+L S DGESFE++EAVA +   I HM+ED+CA   IPL NVTG IL+K++EY K HV  P+ +D                +++L SWD  F+ K+D  T+F +ILAANYLN +GLL    QTVAD IK KTPEE+R+ FNI+NDFTP         N W F
Sbjct:    1 MSSNK-ILLTSSDGESFEIDEAVARKFLIIVHMMEDNCAGEAIPLENVTGDILSKIIEYAKMHVNEPSEEDEDEEA-----------KKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKDKTPEEVREIFNIENDFTPEEEEEIRKENAWTF 156          
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.193e-37
Identity = 83/161 (51.55%), Postives = 108/161 (67.08%), Query Frame = 2
Query:   53 MIVLKSCDGESFEVEEAVALESTTIKHMIED-DCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 532
            ++ L+S D + FE+E+ +A  S TIK+MIED   +D+ IPLPNVT  IL KV++YC+ H + P+ Q                  +D+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP         N+W
Sbjct:    3 LVKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRL--------DDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: ASK5_ARATH (SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.193e-37
Identity = 84/168 (50.00%), Postives = 107/168 (63.69%), Query Frame = 2
Query:   56 IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQAT-LFDLILAANYLNIKGLLDLTCQTV-----ADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 541
            I+LKS DG+SFE++E VA +S  I HM+ED CA + IPL NVT KIL  V++YC+KHV+                      EEDLK WD DF+K  + T LFD+++AANYLNI+ LLDLTC+TV     AD++ GKTP+EIR  FNI+ND T          NQWAF+
Sbjct:    5 IMLKSSDGKSFEIDEDVARKSIAINHMVEDGCATDVIPLRNVTSKILKIVIDYCEKHVK-------------------SKEEEDLKEWDADFMKTIETTILFDVMMAANYLNIQSLLDLTCKTVSDLLQADLLSGKTPDEIRAHFNIENDLTAEEVAKIREENQWAFQ 153          
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: SKP1B_DICDI (SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.887e-37
Identity = 83/161 (51.55%), Postives = 107/161 (66.46%), Query Frame = 2
Query:   53 MIVLKSCDGESFEVEEAVALESTTIKHMIED-DCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 532
            ++ L+S D + FE+E+ +A  S TIK+MIED   +D  IPLPNVT  IL KV++YC+ H + P+ Q                  +D+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP         N+W
Sbjct:    3 LVKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDAPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRL--------DDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: ASK8_ARATH (SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.627e-32
Identity = 75/166 (45.18%), Postives = 102/166 (61.45%), Query Frame = 2
Query:   44 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 541
            S K I+LKS +G++FE+EE  A +  TI HMIE +C DN I +  +T +IL  V+EYC KH  V A                   ++DL+ WD +F++ D++T+F L  AAN+LN K LL L  QTVADMIKG TP+++R+ FNI+ND TP         N+WAFE
Sbjct:    2 STKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKH-HVDAANPCS--------------DDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE 152          
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: ASK17_ARATH (SKP1-like protein 17 OS=Arabidopsis thaliana GN=ASK17 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.073e-32
Identity = 75/166 (45.18%), Postives = 97/166 (58.43%), Query Frame = 2
Query:   44 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAF 538
            S K IVL S D E FE++EAVA +   + HMI+DDCAD  I L NVTGKILA ++EYCKKHV+                      + +  +WD +FVK +D  TLF L+ AA+YL + GL +L  Q +AD    KT  EIR+ FNI+ND+TP         N+WAF
Sbjct:    2 SSKKIVLTSSDDECFEIDEAVARKMQMVAHMIDDDCADKAIRLQNVTGKILAIIIEYCKKHVD------------------DVEAKNEFVTWDAEFVKNIDMDTLFKLLDAADYLIVIGLKNLIAQAIADYTADKTVNEIRELFNIENDYTPEEEEELRKKNEWAF 149          
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: SKP1_SCHPO (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe GN=skp1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.869e-30
Identity = 71/161 (44.10%), Postives = 96/161 (59.63%), Query Frame = 2
Query:   56 IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADN-GIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 535
            I L S D E F V++ +A  S  IK+M+ED    N  IPLPNV+  +L KV+E+C+ H      ++                  D+  WD  F+ VDQ  LF+++LA+NYL+IK LLD  C+TVA+MI+GK+PE+IRKTFNI NDFTP         N+WA
Sbjct:    4 IKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEWCEHH------KNDLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158          
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: SKP1_YEAST (Suppressor of kinetochore protein 1 OS=Saccharomyces cerevisiae GN=SKP1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.196e-24
Identity = 70/197 (35.53%), Postives = 99/197 (50.25%), Query Frame = 2
Query:   56 IVLKSCDGESFEVEEAVALESTTIKHMI---------------------------------EDDCADNGI--PLPNVTGKILAKVVEYCKKHVE--VPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 535
            +VL S +GE F V++ +A  S  +K+ +                                 +DD  D+ I  P+PNV   +L KV+E+ + H +   P   D                   + SWD +F+KVDQ  L+++ILAANYLNIK LLD  C+ VA+MI+G++PEEIR+TFNI NDFTP         N+WA
Sbjct:    6 VVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRK-----------SAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191          
The following BLAST results are available for this feature:
BLAST of CB293409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SKP1_CAVPO4.420e-3850.90S-phase kinase-associated protein 1 OS=Cavia porce... [more]
SKP1_BOVIN4.420e-3850.90S-phase kinase-associated protein 1 OS=Bos taurus ... [more]
ASK18_ARATH1.679e-3750.60SKP1-like protein 18 OS=Arabidopsis thaliana GN=AS... [more]
SKP1A_DICDI2.193e-3751.55SCF ubiquitin ligase complex protein SKP1a OS=Dict... [more]
ASK5_ARATH2.193e-3750.00SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK... [more]
SKP1B_DICDI4.887e-3751.55SCF ubiquitin ligase complex protein SKP1b OS=Dict... [more]
ASK8_ARATH1.627e-3245.18SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK... [more]
ASK17_ARATH8.073e-3245.18SKP1-like protein 17 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_SCHPO9.869e-3044.10Suppressor of kinetochore protein 1 OS=Schizosacch... [more]
SKP1_YEAST6.196e-2435.53Suppressor of kinetochore protein 1 OS=Saccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293409 ID=CB293409; Name=CB293409; organism=Citrus sinensis; type=EST; length=789bp
GGACAAAGTCAGATTTGTTTTCTTTCTTCTCGAAACGATGTCGTCTCCTA
AGATGATCGTACTCAAGAGCTGTGACGGCGAGTCGTTCGAGGTCGAGGAG
GCTGTCGCGCTTGAGTCGACGACCATCAAGCACATGATCGAGGACGACTG
CGCCGATAACGGCATCCCGTTACCGAACGTGACGGGCAAGATCCTGGCGA
AGGTGGTTGAGTATTGCAAGAAACACGTGGAGGTTCCTGCGACCCAGGAT
AGCAACAACAGCGGCGCCAACAGCAACGGTACTGCCACTAACGGTGGTGA
GGAGGATCTCAAAAGCTGGGACACTGACTTCGTCAAAGTTGACCAGGCCA
CTCTCTTCGATCTCATCCTGGCAGCAAACTACCTGAACATCAAGGGGCTG
CTGGACCTTACCTGCCAGACTGTTGCTGACATGATCAAGGGAAAGACTCC
GGAGGAGATTCGAAAGACCTTTAACATCAAGAATGACTTCACTCCAGAGG
AGGAAGAAGAGGTCCGTAGGGAGAACCAGTGGGCTTTTGAGTGAAAGTTG
TTTCAACAAAGACAATTTTTCATTATCATTGTCTTGCAATCTTGCTGTCT
TTAACATGTAGATGTAGTTTTCTAGGGCTTATCTTTTCCTTTCTCATTGT
ACTTTCGAACTTATTAGCTGTTTGAAATGTAAATAATAGTCTGTTCTGGT
GGAACTGGTAGCAGTTGGTCTGGTCCATCCTTTCCTGCTTGCTATCAAGA
CCGTTGGATCATTGAATTTGACTAAAAAAAAAAAAAAAA
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