CB293409
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2) HSP 1 Score: 158.303 bits (399), Expect = 4.420e-38 Identity = 85/167 (50.90%), Postives = 107/167 (64.07%), Query Frame = 2 Query: 56 IVLKSCDGESFEVEEAVALESTTIKHMIED-----DCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 541 I L+S DGE FEV+ +A +S TIK M+ED + D+ +PLPNV IL KV+++C H + P + +D+ WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT--------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 4.420e-38 Identity = 85/167 (50.90%), Postives = 107/167 (64.07%), Query Frame = 2 Query: 56 IVLKSCDGESFEVEEAVALESTTIKHMIED-----DCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 541 I L+S DGE FEV+ +A +S TIK M+ED + D+ +PLPNV IL KV+++C H + P + +D+ WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT NQW E Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT--------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: ASK18_ARATH (SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 1.679e-37 Identity = 85/168 (50.60%), Postives = 107/168 (63.69%), Query Frame = 2 Query: 38 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFV-KVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAF 538 MSS K I+L S DGESFE++EAVA + I HM+ED+CA IPL NVTG IL+K++EY K HV P+ +D +++L SWD F+ K+D T+F +ILAANYLN +GLL QTVAD IK KTPEE+R+ FNI+NDFTP N W F Sbjct: 1 MSSNK-ILLTSSDGESFEIDEAVARKFLIIVHMMEDNCAGEAIPLENVTGDILSKIIEYAKMHVNEPSEEDEDEEA-----------KKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKDKTPEEVREIFNIENDFTPEEEEEIRKENAWTF 156
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 2.193e-37 Identity = 83/161 (51.55%), Postives = 108/161 (67.08%), Query Frame = 2 Query: 53 MIVLKSCDGESFEVEEAVALESTTIKHMIED-DCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 532 ++ L+S D + FE+E+ +A S TIK+MIED +D+ IPLPNVT IL KV++YC+ H + P+ Q +D+ +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP N+W Sbjct: 3 LVKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRL--------DDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: ASK5_ARATH (SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 2.193e-37 Identity = 84/168 (50.00%), Postives = 107/168 (63.69%), Query Frame = 2 Query: 56 IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQAT-LFDLILAANYLNIKGLLDLTCQTV-----ADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 541 I+LKS DG+SFE++E VA +S I HM+ED CA + IPL NVT KIL V++YC+KHV+ EEDLK WD DF+K + T LFD+++AANYLNI+ LLDLTC+TV AD++ GKTP+EIR FNI+ND T NQWAF+ Sbjct: 5 IMLKSSDGKSFEIDEDVARKSIAINHMVEDGCATDVIPLRNVTSKILKIVIDYCEKHVK-------------------SKEEEDLKEWDADFMKTIETTILFDVMMAANYLNIQSLLDLTCKTVSDLLQADLLSGKTPDEIRAHFNIENDLTAEEVAKIREENQWAFQ 153
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: SKP1B_DICDI (SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 4.887e-37 Identity = 83/161 (51.55%), Postives = 107/161 (66.46%), Query Frame = 2 Query: 53 MIVLKSCDGESFEVEEAVALESTTIKHMIED-DCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQW 532 ++ L+S D + FE+E+ +A S TIK+MIED +D IPLPNVT IL KV++YC+ H + P+ Q +D+ +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP N+W Sbjct: 3 LVKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDAPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRL--------DDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: ASK8_ARATH (SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.627e-32 Identity = 75/166 (45.18%), Postives = 102/166 (61.45%), Query Frame = 2 Query: 44 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 541 S K I+LKS +G++FE+EE A + TI HMIE +C DN I + +T +IL V+EYC KH V A ++DL+ WD +F++ D++T+F L AAN+LN K LL L QTVADMIKG TP+++R+ FNI+ND TP N+WAFE Sbjct: 2 STKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKH-HVDAANPCS--------------DDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE 152
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: ASK17_ARATH (SKP1-like protein 17 OS=Arabidopsis thaliana GN=ASK17 PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 8.073e-32 Identity = 75/166 (45.18%), Postives = 97/166 (58.43%), Query Frame = 2 Query: 44 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAF 538 S K IVL S D E FE++EAVA + + HMI+DDCAD I L NVTGKILA ++EYCKKHV+ + + +WD +FVK +D TLF L+ AA+YL + GL +L Q +AD KT EIR+ FNI+ND+TP N+WAF Sbjct: 2 SSKKIVLTSSDDECFEIDEAVARKMQMVAHMIDDDCADKAIRLQNVTGKILAIIIEYCKKHVD------------------DVEAKNEFVTWDAEFVKNIDMDTLFKLLDAADYLIVIGLKNLIAQAIADYTADKTVNEIRELFNIENDYTPEEEEELRKKNEWAF 149
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: SKP1_SCHPO (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe GN=skp1 PE=1 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 9.869e-30 Identity = 71/161 (44.10%), Postives = 96/161 (59.63%), Query Frame = 2 Query: 56 IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADN-GIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 535 I L S D E F V++ +A S IK+M+ED N IPLPNV+ +L KV+E+C+ H ++ D+ WD F+ VDQ LF+++LA+NYL+IK LLD C+TVA+MI+GK+PE+IRKTFNI NDFTP N+WA Sbjct: 4 IKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEWCEHH------KNDLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: SKP1_YEAST (Suppressor of kinetochore protein 1 OS=Saccharomyces cerevisiae GN=SKP1 PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 6.196e-24 Identity = 70/197 (35.53%), Postives = 99/197 (50.25%), Query Frame = 2 Query: 56 IVLKSCDGESFEVEEAVALESTTIKHMI---------------------------------EDDCADNGI--PLPNVTGKILAKVVEYCKKHVE--VPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 535 +VL S +GE F V++ +A S +K+ + +DD D+ I P+PNV +L KV+E+ + H + P D + SWD +F+KVDQ L+++ILAANYLNIK LLD C+ VA+MI+G++PEEIR+TFNI NDFTP N+WA Sbjct: 6 VVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRK-----------SAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191 The following BLAST results are available for this feature:
BLAST of CB293409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >CB293409 ID=CB293409; Name=CB293409; organism=Citrus sinensis; type=EST; length=789bpback to top |