CB293409

Overview
NameCB293409
Unique NameCB293409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9531 contig Csv1_Contig9531:1..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: ASK7_ARATH (SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK7 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.092e-24
Identity = 63/131 (48.09%), Postives = 79/131 (60.31%), Query Frame = 2 
Query:   44 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMI 436
            S K I+LKS DG+ FE+EE  A +  TI HMIE +C DN IP+ NVT +IL  V+EYC KH  V A                   +EDLK WD +F++ DQ T+F L+ AA  L+IK LL L  QTVADM+
Sbjct:    2 STKKIMLKSSDGKMFEIEEETARQCQTIAHMIEAECTDNVIPVSNVTSEILEMVIEYCNKH-HVDAAN--------------PCSDEDLKKWDKEFMEKDQYTIFHLMNAAYDLHIKSLLALAYQTVADMV 117
[Close]
BLAST of CB293409 vs. ExPASy Swiss-Prot
Match: ASK6_ARATH (SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK6 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.759e-21
Identity = 54/97 (55.67%), Postives = 64/97 (65.98%), Query Frame = 2 
Query:  125 IKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFV-KVDQATLFDLILAANYLNIKGLLDLT 412
            IK M EDDCADNGIPLPNVT KIL  V+EYCKKHV                       EEDLK WD +F+ K++Q+ LFD+++AANYLNI+ LLDLT
Sbjct:    3 IKGMAEDDCADNGIPLPNVTSKILLLVIEYCKKHV-------------------VESKEEDLKKWDAEFMKKMEQSILFDVMMAANYLNIQSLLDLT 80
The following BLAST results are available for this feature:
BLAST of CB293409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ASK7_ARATH8.092e-2448.09SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK... [more]
ASK6_ARATH3.759e-2155.67SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293409 ID=CB293409; Name=CB293409; organism=Citrus sinensis; type=EST; length=789bp
GGACAAAGTCAGATTTGTTTTCTTTCTTCTCGAAACGATGTCGTCTCCTA
AGATGATCGTACTCAAGAGCTGTGACGGCGAGTCGTTCGAGGTCGAGGAG
GCTGTCGCGCTTGAGTCGACGACCATCAAGCACATGATCGAGGACGACTG
CGCCGATAACGGCATCCCGTTACCGAACGTGACGGGCAAGATCCTGGCGA
AGGTGGTTGAGTATTGCAAGAAACACGTGGAGGTTCCTGCGACCCAGGAT
AGCAACAACAGCGGCGCCAACAGCAACGGTACTGCCACTAACGGTGGTGA
GGAGGATCTCAAAAGCTGGGACACTGACTTCGTCAAAGTTGACCAGGCCA
CTCTCTTCGATCTCATCCTGGCAGCAAACTACCTGAACATCAAGGGGCTG
CTGGACCTTACCTGCCAGACTGTTGCTGACATGATCAAGGGAAAGACTCC
GGAGGAGATTCGAAAGACCTTTAACATCAAGAATGACTTCACTCCAGAGG
AGGAAGAAGAGGTCCGTAGGGAGAACCAGTGGGCTTTTGAGTGAAAGTTG
TTTCAACAAAGACAATTTTTCATTATCATTGTCTTGCAATCTTGCTGTCT
TTAACATGTAGATGTAGTTTTCTAGGGCTTATCTTTTCCTTTCTCATTGT
ACTTTCGAACTTATTAGCTGTTTGAAATGTAAATAATAGTCTGTTCTGGT
GGAACTGGTAGCAGTTGGTCTGGTCCATCCTTTCCTGCTTGCTATCAAGA
CCGTTGGATCATTGAATTTGACTAAAAAAAAAAAAAAAA
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