CB293413

Overview
NameCB293413
Unique NameCB293413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB293413 vs. ExPASy Swiss-Prot
Match: NDUA5_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Homo sapiens GN=NDUFA5 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.320e-12
Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = 3 
Query:   99 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 386
            +K+TTG+ GL V     E L  LY K L  ++ +P +  YRK  E  T ++L + + E D +++E +L  GQ+EE+I +A+ EL L  KM EW  W
Sbjct:    5 LKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLW 100
[Close]
BLAST of CB293413 vs. ExPASy Swiss-Prot
Match: NDUA5_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Gorilla gorilla gorilla GN=NDUFA5 PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.320e-12
Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = 3 
Query:   99 VKQTTGITGLDVVPNAREVLINLYNKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELTLIGKMIEWDPW 386
            +K+TTG+ GL V     E L  LY K L  ++ +P +  YRK  E  T ++L + + E D +++E +L  GQ+EE+I +A+ EL L  KM EW  W
Sbjct:    5 LKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLW 100
The following BLAST results are available for this feature:
BLAST of CB293413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NDUA5_HUMAN1.320e-1239.58NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA5_GORGO1.320e-1239.58NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293413 ID=CB293413; Name=CB293413; organism=Citrus sinensis; type=EST; length=749bp
GCTCGATTAGAGAGCACCTGAGAATCAAAGTTGAATCAAAGCGAACCATC
AAATCGAAGATGTTCCTGCGCGTGATCGGACGGCCATTGATGGCCAAGGT
GAAACAAACGACTGGGATCACGGGACTGGATGTAGTCCCCAACGCGAGGG
AAGTTCTGATCAATCTTTACAACAAAACGCTAAAGGAGATCCAAGCCGTT
CCTCCGGACGAAGGGTACCGCAAGGCCGTCGAAAGCTTCACACGGCAACG
TTTGAAGGTCTGTCAAGAGGAAGAGGACTGGGAACAGATCGAGAAACGAC
TCGGTTGTGGCCAGGTCGAGGAGCTCATCGAGGAGGCTCAGGATGAGCTC
ACGCTCATCGGGAAAATGATCGAGTGGGATCCTTGGGGTGTTCCTGATGA
CTACGAATGTGAAGTTATTGAGAATGATGCTCCGGTTCCCAAGCATGTTC
CCCTGCATCGACCTGGACCTCTGCCTGAGGAATTCCATAAGACGCTGGAA
GCTGTTACCAAAAAGGATCCTACTGCAGTCACCTCTAGTGAGTCACAATC
ACGGCTGAAGGAGTAGTATGCTGCTCCTGTCTGGAAGAATGTTGAGTTTC
ATAGTCAAAGCTGTCTCTTTGCCTGCATATTTTCTCTTGTTCTTGCTCTT
TATCTTGTATCTTGCCTGTTTCCTTAGATTGCATAGAGTTTTGATTTATG
AGACAAAAGGCTTGAACCATTGGGTTAATAATATATGAACAGGTGTTAC
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