CB293415

Overview
NameCB293415
Unique NameCB293415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_HUMAN (ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3)

HSP 1 Score: 246.514 bits (628), Expect = 1.259e-64
Identity = 123/163 (75.46%), Postives = 140/163 (85.89%), Query Frame = 3
Query:  309 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            A G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP F+E + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:   59 ATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 221          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_BOVIN (ATP synthase subunit beta, mitochondrial OS=Bos taurus GN=ATP5B PE=1 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 1.066e-63
Identity = 122/161 (75.78%), Postives = 138/161 (85.71%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ +  IH EAP FVE + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:   61 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 221          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_CHICK (ATP synthase subunit beta, mitochondrial OS=Gallus gallus GN=ATP5B PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.102e-63
Identity = 122/163 (74.85%), Postives = 138/163 (84.66%), Query Frame = 3
Query:  309 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            A G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G + T+ +  IH EAP FVE + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:   64 ATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPITTKQFAAIHAEAPEFVEMSVEQKILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 226          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPBM_CHLRE (ATP synthase subunit beta, mitochondrial OS=Chlamydomonas reinhardtii GN=ATP2 PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.102e-63
Identity = 124/161 (77.02%), Postives = 137/161 (85.09%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G V QVIG VVDVRFD  LP IL+ALEV  H+VRLVLEVAQHMG+  VR +AMD T+GLVRGQ+V+NTGSPI VPVGR TLGRIMNVIGEP+DE+G ++      IHREAP F EQ+TEQ+ILVTGIKVVDLLAPYQRGGKIGLFGGAGV KTVLIMELIN
Sbjct:   38 GFVSQVIGPVVDVRFDGELPSILSALEVQGHNVRLVLEVAQHMGDNTVRCVAMDSTDGLVRGQKVVNTGSPIKVPVGRGTLGRIMNVIGEPVDEQGPIECSEVWSIHREAPEFTEQSTEQEILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 198          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_CYPCA (ATP synthase subunit beta, mitochondrial OS=Cyprinus carpio GN=atp5b PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.179e-62
Identity = 121/163 (74.23%), Postives = 136/163 (83.44%), Query Frame = 3
Query:  309 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            A G++  VIGAVVDV+FDE LPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL+TG+PI +PVG  TLGRIMNVIGEPIDE+G + T+   PIH EAP F + + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:   49 ASGRIVAVIGAVVDVQFDEDLPPILNALEVAGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGAPIRIPVGPETLGRIMNVIGEPIDERGPITTKQTAPIHAEAPEFTDMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 211          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_DROVI (ATP synthase subunit beta, mitochondrial (Fragment) OS=Drosophila virilis GN=ATPsyn-beta PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.429e-62
Identity = 122/163 (74.85%), Postives = 138/163 (84.66%), Query Frame = 3
Query:  309 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            A G++  VIGAVVDV+FD+ LPPIL ALEV + S RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL+TGSPI +PVG  TLGRIMNVIGEPIDE+G + +    PIH EAP FV+ + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:   36 ANGKIVAVIGAVVDVQFDDNLPPILNALEVDNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGSPIRIPVGAETLGRIMNVIGEPIDERGPIPSAKTSPIHAEAPEFVDMSVEQEILVTGIKVVDLLAPYCKGGKIGLFGGAGVGKTVLIMELIN 198          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_CAEEL (ATP synthase subunit beta, mitochondrial OS=Caenorhabditis elegans GN=atp-2 PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 4.479e-62
Identity = 120/173 (69.36%), Postives = 141/173 (81.50%), Query Frame = 3
Query:  279 KITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            K++ + T   A G++  VIGAVVDV+FDE LPPIL  LEVV  S RL+LEV+QH+G+ VVR IAMDGTEGLVRGQ V +TG PI +PVG  TLGRIMNVIGEPIDE+G + ++++  IH EAP FVE + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:   58 KVSAKATAANASGRIVAVIGAVVDVQFDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 230          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_RHIME (ATP synthase subunit beta OS=Rhizobium meliloti GN=atpD PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.303e-61
Identity = 124/165 (75.15%), Postives = 139/165 (84.24%), Query Frame = 3
Query:  306 GAIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            GA+G+V QVIGAVVDV F+EG LP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD TEGLVRGQ+V +TG PI VPVG+ TLGRIMNVIGEP+DE G LKT     IH+EAPA+V+Q+TE QILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:   33 GAVGRVTQVIGAVVDVAFEEGQLPQILNALETDNNGNRLVLEVAQHLGENSVRTIAMDSTEGLVRGQKVADTGGPIAVPVGKETLGRIMNVIGEPVDEAGPLKTSARRAIHQEAPAYVDQSTEAQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 197          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_SINMW (ATP synthase subunit beta OS=Sinorhizobium medicae (strain WSM419) GN=atpD PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.702e-61
Identity = 127/183 (69.40%), Postives = 144/183 (78.69%), Query Frame = 3
Query:  261 KKGGGGKITDEFT---GKGAIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            KK    K     T     GA+G+V QVIGAVVDV F+EG LP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD TEGLVRGQ+V +TG+PI VPVG+ TLGRIMNVIGEP+DE G LKT     IH++APA+V+Q+TE QILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:   20 KKAASAKTASATTVVAATGAVGRVTQVIGAVVDVAFEEGQLPKILNALETDNNGNRLVLEVAQHLGENSVRTIAMDSTEGLVRGQKVTDTGAPIAVPVGKETLGRIMNVIGEPVDEAGPLKTSARRAIHQDAPAYVDQSTEAQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 202          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_RHILW (ATP synthase subunit beta OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=atpD PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.903e-61
Identity = 121/164 (73.78%), Postives = 137/164 (83.54%), Query Frame = 3
Query:  306 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++G+V QVIGAVVDV F+  LP IL ALE  ++ VRLVLEVAQH+GE  VRTIAMD +EGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE G L T H   IH++AP++VEQ+TE QILVTGIKVVDLLAPY RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   10 GSVGRVTQVIGAVVDVAFEGELPKILNALETTNNGVRLVLEVAQHLGENEVRTIAMDSSEGLVRGQEVSDTGAPIMVPVGNETLGRIMNVIGEPVDEAGPLVTAHKRAIHQDAPSYVEQSTEAQILVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELIN 173          
The following BLAST results are available for this feature:
BLAST of CB293415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_HUMAN1.259e-6475.46ATP synthase subunit beta, mitochondrial OS=Homo s... [more]
ATPB_BOVIN1.066e-6375.78ATP synthase subunit beta, mitochondrial OS=Bos ta... [more]
ATPB_CHICK3.102e-6374.85ATP synthase subunit beta, mitochondrial OS=Gallus... [more]
ATPBM_CHLRE3.102e-6377.02ATP synthase subunit beta, mitochondrial OS=Chlamy... [more]
ATPB_CYPCA1.179e-6274.23ATP synthase subunit beta, mitochondrial OS=Cyprin... [more]
ATPB_DROVI3.429e-6274.85ATP synthase subunit beta, mitochondrial (Fragment... [more]
ATPB_CAEEL4.479e-6269.36ATP synthase subunit beta, mitochondrial OS=Caenor... [more]
ATPB_RHIME1.303e-6175.15ATP synthase subunit beta OS=Rhizobium meliloti GN... [more]
ATPB_SINMW1.702e-6169.40ATP synthase subunit beta OS=Sinorhizobium medicae... [more]
ATPB_RHILW2.903e-6173.78ATP synthase subunit beta OS=Rhizobium leguminosar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293415 ID=CB293415; Name=CB293415; organism=Citrus sinensis; type=EST; length=797bp
GGGCTGAAGGAATTCGGCCCGTGGACATTCTCTCAACATTGAAGCCCTGA
CCAATGGCTCCACGTAGACTCTTATCATCTCTCCTTCGCTCGTCTGTCCG
CCGATCTCCCTCCAAATCTTCGCTTTCTAACTCATCTGTGTTCTCCCCTG
CCGCCACGCGCCGCGCGTCTCCTTATGGGCACCTCCTCTCGCGCGTCTCA
GAGTACGCGACCTCAGCAGCCGCCACTGCCCCACCGGCACAGACTCCGAA
GTCGGATGTAAAGAAAGGCGGCGGTGGTAAAATCACCGATGAGTTTACTG
GAAAGGGCGCGATCGGTCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGAT
GTCAGATTTGACGAGGGGTTGCCTCCGATTTTGACCGCGCTTGAAGTGGT
AGATCACTCCGTTCGGTTAGTGCTTGAGGTGGCTCAGCACATGGGTGAGG
GTGTTGTTAGGACTATTGCTATGGATGGAACTGAAGGGTTGGTTCGTGGC
CAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACCTGTGGGGAGAGT
TACTCTGGGTCGTATTATGAATGTCATTGGAGAGCCTATTGATGAGAAAG
GCGATCTCAAAACTGAACATTACTTGCCCATCCACAGAGAGGCTCCAGCA
TTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCACTGGCATCAAGGT
TGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAAATTGGGCTTTTTG
GTGGTGCTGGTGTANGAAAAACTGTGCTTATTATGGAACTTATTAAC
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