CB293415

Overview
NameCB293415
Unique NameCB293415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_RICB8 (ATP synthase subunit beta OS=Rickettsia bellii (strain OSU 85-389) GN=atpD PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.217e-52
Identity = 106/167 (63.47%), Postives = 130/167 (77.84%), Query Frame = 3
Query:  303 KGAIGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            K  IG++ Q+I AVVDV+F     LP IL ALE  +   R+VLE+AQH+G+  VR IAM+ TEGLVRG  V++TGSPI++PVG  TLGRIMNV+GEPID KG +K      I++ AP+F +Q+T++ ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:    2 KKNIGKITQIISAVVDVKFTNKGKLPQILNALECYNDKQRIVLEIAQHIGDDTVRCIAMNSTEGLVRGMEVVDTGSPISIPVGIETLGRIMNVVGEPIDGKGKIKGSSISSIYKSAPSFTQQSTDRNILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELIN 168          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_FUSNN (ATP synthase subunit beta OS=Fusobacterium nucleatum subsp. nucleatum GN=atpD PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.217e-52
Identity = 101/161 (62.73%), Postives = 122/161 (75.78%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G + Q+I AVVD+ F + LP I  AL+V      LVLEV QH+G  VVRT+AMD T+GL RG  V++TG PIT+PVG+  LGRI+NV+GEP+D +G L  E +LPIHREAP F +  TE +I  TGIKV+DLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:    4 GTITQIISAVVDIAFKDELPAIYNALKVKLEDKELVLEVEQHLGNNVVRTVAMDSTDGLKRGMEVIDTGKPITIPVGKAVLGRILNVLGEPVDNQGPLNAETFLPIHREAPEFDDLETETEIFETGIKVIDLLAPYIKGGKIGLFGGAGVGKTVLIMELIN 164          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_MARMM (ATP synthase subunit beta OS=Maricaulis maris (strain MCS10) GN=atpD PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.202e-52
Identity = 107/161 (66.46%), Postives = 120/161 (74.53%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ Q+ GAVVDV FD  LP IL ALE  +    L LEVAQH+GE  VRTIAMD TEGL RG  V +TG PI VPVG  TLGRIM+V G+PIDE GD+      PIHR AP+F EQATE ++L TGIKVVDLL PY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    6 GRIVQITGAVVDVEFDGTLPDILNALETTNDDKTLTLEVAQHLGENTVRTIAMDATEGLQRGTVVTDTGGPIMVPVGPGTLGRIMSVTGQPIDEAGDVPHTMKAPIHRPAPSFDEQATEAEVLPTGIKVVDLLCPYAKGGKIGLFGGAGVGKTVLIQELIN 166          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_GEOLS (ATP synthase subunit beta OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=atpD PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.202e-52
Identity = 110/168 (65.48%), Postives = 127/168 (75.60%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSV-----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            IG++ QVIGAV+DV F+ G LP I  AL V + ++      LVLEVAQH+GE  VRTIAMD T+GL RGQ V++TG  I  PVGR TLGRIMNVIGEP+DE G +  E    IHREAPAF +Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGV KTVLIMELIN
Sbjct:    5 IGKISQVIGAVIDVEFEPGKLPEIYHALRVTNPAIDDRENNLVLEVAQHLGENSVRTIAMDSTDGLKRGQAVIDTGKQICAPVGRKTLGRIMNVIGEPVDEMGPIGNEKEYGIHREAPAFEDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELIN 172          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_ACICJ (ATP synthase subunit beta OS=Acidiphilium cryptum (strain JF-5) GN=atpD PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.202e-52
Identity = 108/165 (65.45%), Postives = 124/165 (75.15%), Query Frame = 3
Query:  303 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            K   G++ Q++G VVDV+F+  LP IL ALE      RLVLEVAQ +GE  VR IAMD T+GL RG  V +TG  I VPVG  TLGRI+NVIGEPIDE+G + T    PIHR+AP+F EQAT  +ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    3 KNVTGRITQIMGPVVDVQFEGELPYILNALETRVGDRRLVLEVAQEIGERTVRCIAMDSTDGLARGDEVRDTGEAIAVPVGPETLGRILNVIGEPIDERGPIPTTRTAPIHRQAPSFDEQATSAEILVTGIKVVDLLAPYLKGGKIGLFGGAGVGKTVLIQELIN 167          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_RICCK (ATP synthase subunit beta OS=Rickettsia canadensis (strain McKiel) GN=atpD PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.487e-52
Identity = 105/164 (64.02%), Postives = 128/164 (78.05%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            IG++ Q+I AVVDV+F     LP IL ALE    + R+VLEV QH+G+  VR IAMD TEGLVRG  V++TGSPI +PVG  TLGRIMNV+GE ID KG++K+ +   I++ AP+F  Q++E+ ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:    5 IGKITQIISAVVDVKFTNNSKLPAILNALECYSDNQRIVLEVVQHIGDDTVRCIAMDSTEGLVRGLEVVDTGSPICIPVGTATLGRIMNVVGESIDGKGEIKSSNVSSIYKPAPSFTNQSSERTILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELIN 168          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_RICTY (ATP synthase subunit beta OS=Rickettsia typhi GN=atpD PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.360e-52
Identity = 105/164 (64.02%), Postives = 128/164 (78.05%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            IG++ QVI AVVDV+F     LP IL ALE  +   R+VLEVAQH+G+  VR I+M  TEGL+RG  V++TG+PI +PVG  TLGRIMNV+GEPID KG++K+     I++ AP F+ Q+TE+ ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:    5 IGKITQVISAVVDVKFTNNSKLPEILNALECYNAKQRIVLEVAQHIGDDTVRCISMGSTEGLIRGLEVIDTGNPIHIPVGIATLGRIMNVVGEPIDGKGEIKSSTISSIYKPAPDFINQSTERDILVTGIKVVDLLAPYTKGGKIGLFGGAGVGKTVLIMELIN 168          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_PROMO (ATP synthase subunit beta, sodium ion specific OS=Propionigenium modestum GN=atpD PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 9.360e-52
Identity = 102/162 (62.96%), Postives = 124/162 (76.54%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEGLPPILTALEVV-DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G + Q+IG VVDV F+  LP I  AL++   +   LV EV QH+G  VVR +AMD T+GL RG  V++TG  ITVPVG+  LGRI+NV+GEP+DE G++K E Y PIHREAPAF +Q TE+++  TGIKVVDLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:    5 GVITQIIGPVVDVTFENELPRIYNALKIDRGNGEYLVAEVQQHLGNSVVRAVAMDATDGLQRGMEVVDTGPAITVPVGKAVLGRILNVLGEPVDEAGEVKAEEYAPIHREAPAFEDQGTEKEVFETGIKVVDLLAPYVKGGKIGLFGGAGVGKTVLIMELIN 166          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_CAUSK (ATP synthase subunit beta OS=Caulobacter sp. (strain K31) GN=atpD PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.222e-51
Identity = 106/169 (62.72%), Postives = 126/169 (74.56%), Query Frame = 3
Query:  297 TGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            T +   G++ QVIGAVVDV F   LP IL ALE V+ +   RLV EVAQH+G+  VR IAMD TEGLVRGQ V +TG  I VPVG  TLGRIMNVIGEPIDE+G +K++ +  IHR+AP F EQ    ++LVTGIKV+DL+ PY +GGKIGLFGGAGV KTV + ELIN
Sbjct:   63 TIRAGTGKLVQVIGAVVDVEFTGELPAILNALETVNIATGQRLVFEVAQHLGQNTVRAIAMDATEGLVRGQEVRDTGQSIRVPVGPGTLGRIMNVIGEPIDEQGPIKSDIFRTIHRDAPTFAEQTNTAEVLVTGIKVIDLMCPYTKGGKIGLFGGAGVGKTVTMQELIN 231          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_DESDA (ATP synthase subunit beta OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=atpD PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.597e-51
Identity = 102/167 (61.08%), Postives = 129/167 (77.25%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEG-LPPILTALEVVD----HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            IG++ QVIGAVVDV F +G LP I TALE+ +     +  L+ EVAQH+G+ VVRTIAMD TEGLVRG   ++TG PI VPVG+ ++GRI+NVIG P+DE G +  E Y PIHR APAF +Q T+ ++L TGIKVVDLL P+ +GGK+GLFGGAGV KTV++ME+IN
Sbjct:    5 IGKIVQVIGAVVDVEFSDGNLPNIFTALEIKNPNNTDAPELICEVAQHLGDNVVRTIAMDATEGLVRGMDAVDTGQPIMVPVGKPSVGRILNVIGRPVDEMGPINAEKYYPIHRPAPAFTDQNTKVELLETGIKVVDLLVPFPKGGKMGLFGGAGVGKTVILMEMIN 171          
The following BLAST results are available for this feature:
BLAST of CB293415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_RICB83.217e-5263.47ATP synthase subunit beta OS=Rickettsia bellii (st... [more]
ATPB_FUSNN3.217e-5262.73ATP synthase subunit beta OS=Fusobacterium nucleat... [more]
ATPB_MARMM4.202e-5266.46ATP synthase subunit beta OS=Maricaulis maris (str... [more]
ATPB_GEOLS4.202e-5265.48ATP synthase subunit beta OS=Geobacter lovleyi (st... [more]
ATPB_ACICJ4.202e-5265.45ATP synthase subunit beta OS=Acidiphilium cryptum ... [more]
ATPB_RICCK5.487e-5264.02ATP synthase subunit beta OS=Rickettsia canadensis... [more]
ATPB_RICTY9.360e-5264.02ATP synthase subunit beta OS=Rickettsia typhi GN=a... [more]
ATPB_PROMO9.360e-5262.96ATP synthase subunit beta, sodium ion specific OS=... [more]
ATPB_CAUSK1.222e-5162.72ATP synthase subunit beta OS=Caulobacter sp. (stra... [more]
ATPB_DESDA1.597e-5161.08ATP synthase subunit beta OS=Desulfovibrio desulfu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06ac10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293415 ID=CB293415; Name=CB293415; organism=Citrus sinensis; type=EST; length=797bp
GGGCTGAAGGAATTCGGCCCGTGGACATTCTCTCAACATTGAAGCCCTGA
CCAATGGCTCCACGTAGACTCTTATCATCTCTCCTTCGCTCGTCTGTCCG
CCGATCTCCCTCCAAATCTTCGCTTTCTAACTCATCTGTGTTCTCCCCTG
CCGCCACGCGCCGCGCGTCTCCTTATGGGCACCTCCTCTCGCGCGTCTCA
GAGTACGCGACCTCAGCAGCCGCCACTGCCCCACCGGCACAGACTCCGAA
GTCGGATGTAAAGAAAGGCGGCGGTGGTAAAATCACCGATGAGTTTACTG
GAAAGGGCGCGATCGGTCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGAT
GTCAGATTTGACGAGGGGTTGCCTCCGATTTTGACCGCGCTTGAAGTGGT
AGATCACTCCGTTCGGTTAGTGCTTGAGGTGGCTCAGCACATGGGTGAGG
GTGTTGTTAGGACTATTGCTATGGATGGAACTGAAGGGTTGGTTCGTGGC
CAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACCTGTGGGGAGAGT
TACTCTGGGTCGTATTATGAATGTCATTGGAGAGCCTATTGATGAGAAAG
GCGATCTCAAAACTGAACATTACTTGCCCATCCACAGAGAGGCTCCAGCA
TTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCACTGGCATCAAGGT
TGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAAATTGGGCTTTTTG
GTGGTGCTGGTGTANGAAAAACTGTGCTTATTATGGAACTTATTAAC
back to top