CB293415

Overview
NameCB293415
Unique NameCB293415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_LAWIP (ATP synthase subunit beta OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=atpD PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.645e-51
Identity = 102/167 (61.08%), Postives = 131/167 (78.44%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEG-LPPILTALEVVD----HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            IG++ QVIGAVVDV F  G LPPILTALE+ +     + +L+ EVAQH+G+ +VRTIAMD TEGL RG  VL+TG PI  PVG+ +LGRIMNV+G+PID  G + T+ YLPIHR+ P+F++Q T  + L TGIKV+DLL P+ +GGK+GLFGGAGV KTV++ME+IN
Sbjct:    5 IGKIVQVIGAVVDVSFPNGKLPPILTALEIHNPNSIDAPKLICEVAQHLGDDIVRTIAMDATEGLKRGMDVLDTGHPIMAPVGKASLGRIMNVVGQPIDGLGVIDTKTYLPIHRKPPSFLDQNTSVEPLETGIKVIDLLVPFPKGGKMGLFGGAGVGKTVILMEMIN 171          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_CARHZ (ATP synthase subunit beta OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=atpD PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.645e-51
Identity = 100/171 (58.48%), Postives = 129/171 (75.44%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEG-LPPILTALEV--------VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            +G+V QVIG VVDV F+ G +PPI  AL++         +  + L LEVAQH+G   VR +AM  T+GLVRG +V++TG+PITVPVGR  LGR++NV+GEPID KG ++++HY PIHR AP   EQ+T  +IL TGIKV+DLL P+ +GGKIGLFGGAGV KTV++MELIN
Sbjct:    3 VGRVVQVIGVVVDVEFEPGKVPPIYNALKIRSEDQDTPTEVPINLTLEVAQHLGNNRVRAVAMSSTDGLVRGMKVVDTGAPITVPVGRPVLGRLLNVLGEPIDGKGPVESDHYYPIHRPAPPLEEQSTRAEILETGIKVIDLLVPFLKGGKIGLFGGAGVGKTVIVMELIN 173          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB2_PELPD (ATP synthase subunit beta 2 OS=Pelobacter propionicus (strain DSM 2379) GN=atpD2 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.645e-51
Identity = 108/167 (64.67%), Postives = 126/167 (75.45%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVR-----LVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ QVIGAVVDV F+ G LP I  AL V + ++      LVLEVAQH+GE  VRTIAMD T+GL RGQ VL+TG  I  PVG+ TLGRI+NVIGEP+DE G +  +   PIHREAP F +Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGV KTVLIMELIN
Sbjct:    6 GKITQVIGAVVDVEFEPGKLPEIYHALRVTNPAINDSENNLVLEVAQHLGENSVRTIAMDSTDGLKRGQAVLDTGKQICAPVGKKTLGRIINVIGEPVDEMGPIGNDKENPIHREAPPFEDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELIN 172          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB1_PELPD (ATP synthase subunit beta 1 OS=Pelobacter propionicus (strain DSM 2379) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.645e-51
Identity = 108/167 (64.67%), Postives = 126/167 (75.45%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVR-----LVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ QVIGAVVDV F+ G LP I  AL V + ++      LVLEVAQH+GE  VRTIAMD T+GL RGQ VL+TG  I  PVG+ TLGRI+NVIGEP+DE G +  +   PIHREAP F +Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGV KTVLIMELIN
Sbjct:    6 GKITQVIGAVVDVEFEPGKLPEIYHALRVTNPAINDSENNLVLEVAQHLGENSVRTIAMDSTDGLKRGQAVLDTGKQICAPVGKKTLGRIINVIGEPVDEMGPIGNDKENPIHREAPPFEDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELIN 172          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_GRABC (ATP synthase subunit beta OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=atpD PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.035e-50
Identity = 106/162 (65.43%), Postives = 123/162 (75.93%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            +G+V Q++GAVVDV+FD  LP I  AL+       L+LEVAQ +GE  VR IAMD T+GLVRG  V + G PITVPVG  TLGRI+NVIGEPIDE+G +  +    IHREAP+F EQA   +ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    6 VGRVTQILGAVVDVQFDGELPFIQNALQTRIGDRTLILEVAQELGERTVRAIAMDSTDGLVRGAEVEDLGRPITVPVGPGTLGRILNVIGEPIDERGPVDAKKTYSIHREAPSFEEQAASAEILVTGIKVVDLLAPYLKGGKIGLFGGAGVGKTVLIQELIN 167          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_GLUDA (ATP synthase subunit beta OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=atpD PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.035e-50
Identity = 105/162 (64.81%), Postives = 126/162 (77.78%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            +G+V QV GAVVDV+F+  LP IL AL V  +   +VLEVAQ +GE  VR IAMD T+GL+RG  V+ TG  ITVPVG  TLGRI+NVIGEPIDE+G +K++   PIHR+AP+F EQA   +ILVTGIKVVDLL PY +GGK+GLFGGAGV KTV+I ELIN
Sbjct:   23 VGRVTQVRGAVVDVQFEGTLPHILDALHVTFNGQTVVLEVAQEIGEHEVRCIAMDTTDGLMRGTEVVATGGQITVPVGPGTLGRILNVIGEPIDERGPVKSDKRYPIHRKAPSFDEQAAATEILVTGIKVVDLLCPYLKGGKVGLFGGAGVGKTVIIQELIN 184          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB3_PELCD (ATP synthase subunit beta 3 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=atpD3 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.352e-50
Identity = 107/167 (64.07%), Postives = 128/167 (76.65%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSV-----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ QVIG V+DV F+ G LP I  AL+V + S+      LV EVAQH+GE  VR IAMD T+GLVRGQ VLNTG  I+VPVGR TLGRI+NVIGEP+DE+G ++T+    IHR  P FV+Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGV KTVLIMELI+
Sbjct:    4 GKITQVIGPVIDVEFEAGELPEIYYALKVSNPSLGDEPWNLVAEVAQHLGENTVRAIAMDSTDGLVRGQEVLNTGRQISVPVGRGTLGRILNVIGEPVDEQGPVETDTTWEIHRPTPEFVDQSTKVEAFETGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELIH 170          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB1_PELCD (ATP synthase subunit beta 1 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.352e-50
Identity = 107/167 (64.07%), Postives = 128/167 (76.65%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSV-----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ QVIG V+DV F+ G LP I  AL+V + S+      LV EVAQH+GE  VR IAMD T+GLVRGQ VLNTG  I+VPVGR TLGRI+NVIGEP+DE+G ++T+    IHR  P FV+Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGV KTVLIMELI+
Sbjct:    4 GKITQVIGPVIDVEFEAGELPEIYYALKVSNPSLGDEPWNLVAEVAQHLGENTVRAIAMDSTDGLVRGQEVLNTGRQISVPVGRGTLGRILNVIGEPVDEQGPVETDTTWEIHRPTPEFVDQSTKVEAFETGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELIH 170          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_THENN (ATP synthase subunit beta OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=atpD PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.306e-50
Identity = 101/167 (60.48%), Postives = 131/167 (78.44%), Query Frame = 3
Query:  303 KGAIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELI 794
            KG+ G +  V+G VVDV+F +E LP I  ALEVV+     ++VLEV Q +G+GVVRT+AMD T+GL++G  V++TG PIT PVG+  LGRI+NVIGEP+DE G++K++   PIHR AP  +EQ+TE +IL TGIKV+DLLAP+ +GGKIG FGGAGV KTVL+MELI
Sbjct:    3 KGSKGYIVGVMGPVVDVKFPEEELPDIFNALEVVNPQTGQKIVLEVEQLIGDGVVRTVAMDSTDGLMKGLEVVDTGEPITAPVGKEVLGRILNVIGEPVDEAGEIKSKERWPIHRPAPELIEQSTEIEILETGIKVIDLLAPFPKGGKIGFFGGAGVGKTVLVMELI 169          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_SORC5 (ATP synthase subunit beta OS=Sorangium cellulosum (strain So ce56) GN=atpD PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.011e-50
Identity = 103/168 (61.31%), Postives = 127/168 (75.60%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSV-----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            +G++ QVIG VVDV F  G LP IL AL++ + S+      LVLEVAQH+GE  VRTIAMD T+GLVRG  V +TG PI VPVG   LGRI+NV+G PIDE G +  +   PIHRE P F+EQ+T+ ++  TGIKV+DL+APY++GGKIGLFGGAGV KTVLI+ELIN
Sbjct:    3 VGKITQVIGPVVDVDFPAGQLPKILNALKLSNPSISAEPDNLVLEVAQHLGESSVRTIAMDSTDGLVRGMEVRDTGKPIMVPVGNECLGRILNVVGVPIDEAGPVHAKKVAPIHREPPPFIEQSTKVEVFETGIKVIDLIAPYRKGGKIGLFGGAGVGKTVLILELIN 170          
The following BLAST results are available for this feature:
BLAST of CB293415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_LAWIP4.645e-5161.08ATP synthase subunit beta OS=Lawsonia intracellula... [more]
ATPB_CARHZ4.645e-5158.48ATP synthase subunit beta OS=Carboxydothermus hydr... [more]
ATPB2_PELPD4.645e-5164.67ATP synthase subunit beta 2 OS=Pelobacter propioni... [more]
ATPB1_PELPD4.645e-5164.67ATP synthase subunit beta 1 OS=Pelobacter propioni... [more]
ATPB_GRABC1.035e-5065.43ATP synthase subunit beta OS=Granulibacter bethesd... [more]
ATPB_GLUDA1.035e-5064.81ATP synthase subunit beta OS=Gluconacetobacter dia... [more]
ATPB3_PELCD1.352e-5064.07ATP synthase subunit beta 3 OS=Pelobacter carbinol... [more]
ATPB1_PELCD1.352e-5064.07ATP synthase subunit beta 1 OS=Pelobacter carbinol... [more]
ATPB_THENN2.306e-5060.48ATP synthase subunit beta OS=Thermotoga neapolitan... [more]
ATPB_SORC53.011e-5061.31ATP synthase subunit beta OS=Sorangium cellulosum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293415 ID=CB293415; Name=CB293415; organism=Citrus sinensis; type=EST; length=797bp
GGGCTGAAGGAATTCGGCCCGTGGACATTCTCTCAACATTGAAGCCCTGA
CCAATGGCTCCACGTAGACTCTTATCATCTCTCCTTCGCTCGTCTGTCCG
CCGATCTCCCTCCAAATCTTCGCTTTCTAACTCATCTGTGTTCTCCCCTG
CCGCCACGCGCCGCGCGTCTCCTTATGGGCACCTCCTCTCGCGCGTCTCA
GAGTACGCGACCTCAGCAGCCGCCACTGCCCCACCGGCACAGACTCCGAA
GTCGGATGTAAAGAAAGGCGGCGGTGGTAAAATCACCGATGAGTTTACTG
GAAAGGGCGCGATCGGTCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGAT
GTCAGATTTGACGAGGGGTTGCCTCCGATTTTGACCGCGCTTGAAGTGGT
AGATCACTCCGTTCGGTTAGTGCTTGAGGTGGCTCAGCACATGGGTGAGG
GTGTTGTTAGGACTATTGCTATGGATGGAACTGAAGGGTTGGTTCGTGGC
CAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACCTGTGGGGAGAGT
TACTCTGGGTCGTATTATGAATGTCATTGGAGAGCCTATTGATGAGAAAG
GCGATCTCAAAACTGAACATTACTTGCCCATCCACAGAGAGGCTCCAGCA
TTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCACTGGCATCAAGGT
TGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAAATTGGGCTTTTTG
GTGGTGCTGGTGTANGAAAAACTGTGCTTATTATGGAACTTATTAAC
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