CB293415

Overview
NameCB293415
Unique NameCB293415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_CLOAB (ATP synthase subunit beta OS=Clostridium acetobutylicum GN=atpD PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.011e-50
Identity = 96/164 (58.54%), Postives = 126/164 (76.83%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFD-EGLPPILTALEV-VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            +G++ QVIG VVD++FD E LP I  ++E+ +  + +L+ EV QH+G+ +VRTIAM+GT+GL RG   +NTG PI+VPVG   LGR+ NV+G+ IDE GD+  + Y PIHR AP F EQ+ + ++  TGIKV+DLLAPYQ+GGKIGLFGGAGV KTVLI ELIN
Sbjct:    5 VGKIVQVIGPVVDIKFDAENLPDIYNSIEIDMGDNKKLIAEVEQHVGDDIVRTIAMEGTDGLKRGMEAVNTGKPISVPVGENVLGRLFNVLGQTIDEAGDMNADKYYPIHRPAPTFEEQSVQPEMFETGIKVIDLLAPYQKGGKIGLFGGAGVGKTVLIQELIN 168          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_THESQ (ATP synthase subunit beta OS=Thermotoga sp. (strain RQ2) GN=atpD PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.136e-50
Identity = 101/167 (60.48%), Postives = 130/167 (77.84%), Query Frame = 3
Query:  303 KGAIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELI 794
            KG+ G +  ++G VVDV+F +E LP I  ALEVV+     ++VLEV Q +G+GVVRT+AMD T+GL +G  V++TG+PIT PVG+  LGRI+NVIGEP+DE G++K +   PIHR AP  VEQ+TE +IL TGIKV+DLLAP+ +GGKIG FGGAGV KTVL+MELI
Sbjct:    3 KGSKGFIVSIMGPVVDVKFPEEELPDIYNALEVVNPQTGQKVVLEVEQLIGDGVVRTVAMDSTDGLTKGLEVVDTGAPITAPVGKEVLGRILNVIGEPVDEAGEIKAKERWPIHRPAPELVEQSTEIEILETGIKVIDLLAPFPKGGKIGFFGGAGVGKTVLVMELI 169          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_THEP1 (ATP synthase subunit beta OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=atpD PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.136e-50
Identity = 101/167 (60.48%), Postives = 130/167 (77.84%), Query Frame = 3
Query:  303 KGAIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELI 794
            KG+ G +  ++G VVDV+F +E LP I  ALEVV+     ++VLEV Q +G+GVVRT+AMD T+GL +G  V++TG+PIT PVG+  LGRI+NVIGEP+DE G++K +   PIHR AP  VEQ+TE +IL TGIKV+DLLAP+ +GGKIG FGGAGV KTVL+MELI
Sbjct:    3 KGSKGFIVSIMGPVVDVKFPEEELPDIYNALEVVNPQTGQKVVLEVEQLIGDGVVRTVAMDSTDGLTKGLEVVDTGAPITAPVGKEVLGRILNVIGEPVDEAGEIKAKERWPIHRPAPELVEQSTEIEILETGIKVIDLLAPFPKGGKIGFFGGAGVGKTVLVMELI 169          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_THEMA (ATP synthase subunit beta OS=Thermotoga maritima GN=atpD PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.136e-50
Identity = 101/167 (60.48%), Postives = 130/167 (77.84%), Query Frame = 3
Query:  303 KGAIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELI 794
            KG+ G +  ++G VVDV+F +E LP I  ALEVV+     ++VLEV Q +G+GVVRT+AMD T+GL +G  V++TG+PIT PVG+  LGRI+NVIGEP+DE G++K +   PIHR AP  VEQ+TE +IL TGIKV+DLLAP+ +GGKIG FGGAGV KTVL+MELI
Sbjct:    3 KGSKGFIVSIMGPVVDVKFPEEELPDIYNALEVVNPQTGQKVVLEVEQLIGDGVVRTVAMDSTDGLTKGLEVVDTGAPITAPVGKEVLGRILNVIGEPVDEAGEIKAKERWPIHRPAPELVEQSTEIEILETGIKVIDLLAPFPKGGKIGFFGGAGVGKTVLVMELI 169          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_STIAU (ATP synthase subunit beta OS=Stigmatella aurantiaca GN=atpD PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.136e-50
Identity = 101/167 (60.48%), Postives = 124/167 (74.25%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSV-----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELI 794
            +G++ QV+G V+DV F  G LP + TAL+V + S+      L +EVAQH+GE +VR I+MD TEGL RGQ V NTG+PI VPVG+ TLGRI+NVIGEP+DE+G + +    PIHR AP FV+Q    Q   TGIKV+DLL PY RGGKIGLFGGAGV KTVL+MELI
Sbjct:    8 VGKITQVLGPVIDVEFPPGGLPEVYTALKVTNTSISAEADNLTIEVAQHLGENMVRCISMDSTEGLARGQAVKNTGAPIQVPVGQGTLGRILNVIGEPVDERGPITSSQTWPIHRPAPTFVDQDVRVQAFETGIKVIDLLGPYTRGGKIGLFGGAGVGKTVLLMELI 174          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_DESDG (ATP synthase subunit beta OS=Desulfovibrio desulfuricans (strain G20) GN=atpD PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.136e-50
Identity = 103/167 (61.68%), Postives = 126/167 (75.45%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHS----VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            IG++ QVIGAVVDV F +G LP IL AL + + +      L+ EVAQH+G+ VVRTIAMD TEGLVRG  V +TG+PI VPVG  +LGRIMNV+G P+DE GD+     LPIHR AP F EQ T  ++L TGIKVVDLL P+ +GGK+GLFGGAGV KTV++ME+IN
Sbjct:    4 IGKITQVIGAVVDVEFADGNLPNILNALVIKNPNNADCPELICEVAQHLGDNVVRTIAMDATEGLVRGMEVTDTGNPIMVPVGSASLGRIMNVVGRPVDEMGDIDAAKSLPIHRPAPEFNEQNTNVELLETGIKVVDLLIPFPKGGKMGLFGGAGVGKTVILMEMIN 170          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_CLOK5 (ATP synthase subunit beta OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=atpD PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.136e-50
Identity = 91/163 (55.83%), Postives = 129/163 (79.14%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDE-GLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            IG+V QVIG VVD++FDE  LP I  A+ +   + +++ EVAQH+G+ +VRTI+M+ T+GL+RG   L+ G+PI+VPVG+  LGR+ N++G+PIDE G+++ + Y PIHR AP+F +Q+ + ++  TGIKV+DL+APYQ+GGKIGLFGGAGV KTV+I ELIN
Sbjct:    4 IGKVVQVIGPVVDIKFDEENLPDIYNAISIESGNAKIITEVAQHLGDDIVRTISMESTDGLMRGMDALDIGAPISVPVGKPVLGRLFNMLGQPIDENGEVEADEYSPIHRPAPSFEDQSVKPEMFETGIKVIDLIAPYQKGGKIGLFGGAGVGKTVIIQELIN 166          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB1_GLUOX (ATP synthase subunit beta 1 OS=Gluconobacter oxydans GN=atpD1 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.136e-50
Identity = 105/162 (64.81%), Postives = 122/162 (75.31%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            +G+V QV G VVDV+F+  LP IL AL V +    LVLEVAQ +GE  VR IAMD T+GLVRG  V +TG  I VPVG  TLGRI+NV+GEPIDE+G + +E   PIHR AP+F EQA   +ILVTGIKVVDLL PY +GGKIGLFGGAGV KTV+I ELIN
Sbjct:   16 VGRVTQVRGPVVDVQFEGDLPFILNALHVQNGDHTLVLEVAQEIGERQVRCIAMDTTDGLVRGTEVRDTGKQIMVPVGPATLGRILNVVGEPIDERGPISSELRFPIHRPAPSFEEQAAASEILVTGIKVVDLLCPYLKGGKIGLFGGAGVGKTVIIQELIN 177          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_DESVV (ATP synthase subunit beta OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=atpD PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.708e-50
Identity = 101/167 (60.48%), Postives = 126/167 (75.45%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEG-LPPILTALEVVD----HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            IG++ QVIGAVVDV F  G LP IL AL++ +     +  LV EVAQH+G+ +VRTIAMD TEGLVRG    +TG PI VPVG+ +LGRIMNV+G P+DE G +  +  LPIHR AP F EQ T+ ++L TGIKVVDLL P+ +GGK+GLFGGAGV KTV++ME+IN
Sbjct:    5 IGKIVQVIGAVVDVEFPSGQLPNILNALDIKNPNNTDAPDLVCEVAQHLGDNIVRTIAMDATEGLVRGMEASDTGKPIMVPVGKASLGRIMNVVGRPVDELGPINADKSLPIHRAAPEFTEQNTKVELLETGIKVVDLLIPFPKGGKMGLFGGAGVGKTVILMEMIN 171          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_DESVH (ATP synthase subunit beta OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=atpD PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.708e-50
Identity = 101/167 (60.48%), Postives = 126/167 (75.45%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEG-LPPILTALEVVD----HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            IG++ QVIGAVVDV F  G LP IL AL++ +     +  LV EVAQH+G+ +VRTIAMD TEGLVRG    +TG PI VPVG+ +LGRIMNV+G P+DE G +  +  LPIHR AP F EQ T+ ++L TGIKVVDLL P+ +GGK+GLFGGAGV KTV++ME+IN
Sbjct:    5 IGKIVQVIGAVVDVEFPSGQLPNILNALDIKNPNNTDAPDLVCEVAQHLGDNIVRTIAMDATEGLVRGMEASDTGKPIMVPVGKASLGRIMNVVGRPVDELGPINADKSLPIHRAAPEFTEQNTKVELLETGIKVVDLLIPFPKGGKMGLFGGAGVGKTVILMEMIN 171          
The following BLAST results are available for this feature:
BLAST of CB293415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_CLOAB3.011e-5058.54ATP synthase subunit beta OS=Clostridium acetobuty... [more]
ATPB_THESQ5.136e-5060.48ATP synthase subunit beta OS=Thermotoga sp. (strai... [more]
ATPB_THEP15.136e-5060.48ATP synthase subunit beta OS=Thermotoga petrophila... [more]
ATPB_THEMA5.136e-5060.48ATP synthase subunit beta OS=Thermotoga maritima G... [more]
ATPB_STIAU5.136e-5060.48ATP synthase subunit beta OS=Stigmatella aurantiac... [more]
ATPB_DESDG5.136e-5061.68ATP synthase subunit beta OS=Desulfovibrio desulfu... [more]
ATPB_CLOK55.136e-5055.83ATP synthase subunit beta OS=Clostridium kluyveri ... [more]
ATPB1_GLUOX5.136e-5064.81ATP synthase subunit beta 1 OS=Gluconobacter oxyda... [more]
ATPB_DESVV6.708e-5060.48ATP synthase subunit beta OS=Desulfovibrio vulgari... [more]
ATPB_DESVH6.708e-5060.48ATP synthase subunit beta OS=Desulfovibrio vulgari... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293415 ID=CB293415; Name=CB293415; organism=Citrus sinensis; type=EST; length=797bp
GGGCTGAAGGAATTCGGCCCGTGGACATTCTCTCAACATTGAAGCCCTGA
CCAATGGCTCCACGTAGACTCTTATCATCTCTCCTTCGCTCGTCTGTCCG
CCGATCTCCCTCCAAATCTTCGCTTTCTAACTCATCTGTGTTCTCCCCTG
CCGCCACGCGCCGCGCGTCTCCTTATGGGCACCTCCTCTCGCGCGTCTCA
GAGTACGCGACCTCAGCAGCCGCCACTGCCCCACCGGCACAGACTCCGAA
GTCGGATGTAAAGAAAGGCGGCGGTGGTAAAATCACCGATGAGTTTACTG
GAAAGGGCGCGATCGGTCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGAT
GTCAGATTTGACGAGGGGTTGCCTCCGATTTTGACCGCGCTTGAAGTGGT
AGATCACTCCGTTCGGTTAGTGCTTGAGGTGGCTCAGCACATGGGTGAGG
GTGTTGTTAGGACTATTGCTATGGATGGAACTGAAGGGTTGGTTCGTGGC
CAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACCTGTGGGGAGAGT
TACTCTGGGTCGTATTATGAATGTCATTGGAGAGCCTATTGATGAGAAAG
GCGATCTCAAAACTGAACATTACTTGCCCATCCACAGAGAGGCTCCAGCA
TTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCACTGGCATCAAGGT
TGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAAATTGGGCTTTTTG
GTGGTGCTGGTGTANGAAAAACTGTGCTTATTATGGAACTTATTAAC
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