CB293415

Overview
NameCB293415
Unique NameCB293415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_FERIS (ATP synthase subunit beta OS=Fervidobacterium islandicum GN=atpD PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.144e-49
Identity = 100/167 (59.88%), Postives = 127/167 (76.05%), Query Frame = 3
Query:  303 KGAIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELI 794
            K ++G++ ++IG VVDV+F EG LP I  AL V++     +L+LEV Q +G+ +VRT+AMD T+GLVRG  V NTG PI  PVGR  LGR+ NVIGEPIDE+G+LK   Y PIHR AP+  EQ TE +IL TG+KV+DLLAP+ +GGKIG FGGAGV KTVL+ME+I
Sbjct:    3 KKSVGKIVRIIGPVVDVKFQEGDLPDIYDALVVINPQTGKKLILEVEQLIGDNIVRTVAMDSTDGLVRGLEVENTGEPIKAPVGRGVLGRMFNVIGEPIDEQGELKDIEYWPIHRPAPSMTEQKTEIEILETGLKVIDLLAPFPKGGKIGFFGGAGVGKTVLVMEMI 169          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_MYXXD (ATP synthase subunit beta OS=Myxococcus xanthus (strain DK 1622) GN=atpD PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.329e-49
Identity = 102/166 (61.45%), Postives = 120/166 (72.29%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSV-----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELI 794
            G++ QV+G VVDV F  G LP + TAL+V + ++      L LEVAQH+GE  VRTIAMD TEGL RG  V NTG+PI VPVG+ TLGRI+NV GEP+DE G +K + Y  IHR  P F EQ    Q+  TGIKV+DLLAPY RGGKIGLFGGAGV KTVL+ ELI
Sbjct:    9 GRIIQVLGPVVDVEFPPGGLPEVYTALKVTNANLSAAADNLTLEVAQHLGENTVRTIAMDSTEGLGRGMAVTNTGAPIQVPVGKATLGRILNVTGEPVDEMGPVKAQEYWSIHRAPPPFTEQDVRVQMFETGIKVIDLLAPYTRGGKIGLFGGAGVGKTVLLQELI 174          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_CLONN (ATP synthase subunit beta OS=Clostridium novyi (strain NT) GN=atpD PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.348e-49
Identity = 97/163 (59.51%), Postives = 122/163 (74.85%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            +G+V QVIG V+D++FD   LP I  A+E+      L+ EV QH+G+ VVRTIAM+ TEGL RG + +NT  PI+VPVG   LGR+ NV+G+ IDE+G+ K E Y PIHR AP F EQ+ E ++  TGIKV+DL+APYQ+GGKIGLFGGAGV KTVLI ELIN
Sbjct:    6 VGRVVQVIGPVIDIKFDSDCLPNIYNAIEIDMGDRILITEVEQHIGDDVVRTIAMESTEGLKRGMKAVNTEKPISVPVGSEILGRLFNVLGKTIDEEGEFKAEEYYPIHRPAPTFEEQSVEPEMFETGIKVIDLIAPYQKGGKIGLFGGAGVGKTVLIQELIN 168          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_DESOH (ATP synthase subunit beta OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=atpD PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.679e-49
Identity = 99/168 (58.93%), Postives = 127/168 (75.60%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEG-LPPILTALEVV-----DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            IG+V QV+G VVDV F+ G LP ILTAL +      D +  LV+EVAQH+G+ VVRTIAMD T+GLVRG  V +TG+PIT+PVG  +LGR++NV+G+P+D  G +  E  +PIHR AP F EQ T   +L TGIKV+DLL P+ RGGK+GLFGGAGV KTV++ME++N
Sbjct:    5 IGKVVQVMGPVVDVEFEPGKLPAILTALLITNTVINDEADNLVVEVAQHLGDNVVRTIAMDVTDGLVRGMPVKDTGAPITMPVGAASLGRVLNVVGKPVDGLGPVSREKTMPIHRPAPLFTEQDTSVNVLETGIKVIDLLVPFPRGGKMGLFGGAGVGKTVIMMEMVN 172          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_FERNB (ATP synthase subunit beta OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=atpD PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.417e-49
Identity = 100/167 (59.88%), Postives = 125/167 (74.85%), Query Frame = 3
Query:  303 KGAIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELI 794
            K +IG++ ++IG VVDV+F EG LP I  AL V +     +L+LEV Q +G+  VRT+AMD T+GL+RG  V NTG PI  PVGR  LGR++NVIGEPIDE G+LK   Y PIHR AP+  EQ TE +IL TG+KV+DLLAP+ +GGKIG FGGAGV KTVL+ME+I
Sbjct:    3 KKSIGKIVRIIGPVVDVKFSEGELPDIYDALVVNNPQTGKKLILEVEQLIGDNTVRTVAMDSTDGLIRGMEVENTGEPIKAPVGRGILGRMINVIGEPIDENGELKDVEYWPIHRPAPSMAEQKTEIEILETGLKVIDLLAPFPKGGKIGFFGGAGVGKTVLVMEMI 169          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_CLOB8 (ATP synthase subunit beta OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=atpD PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.417e-49
Identity = 96/165 (58.18%), Postives = 124/165 (75.15%), Query Frame = 3
Query:  306 GAIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G +G+V QVIG V+D++FD + LP +  A+ +      LV EV QH+G+ +VRTIAM  TEGL RG   ++TG+PI+VPVG   LGR+ NV+G+PID+ GD++ +   PIHR AP+F +Q+ E ++  TGIKVVDLLAPYQRGGKIGLFGGAGV KTVLI ELIN
Sbjct:    3 GKMGKVVQVIGPVIDIKFDSDSLPDLYNAIVIKAGDYELVAEVEQHVGDDIVRTIAMSATEGLKRGMDAVDTGAPISVPVGEEVLGRLFNVLGKPIDKCGDIEVKQEYPIHRPAPSFKDQSVEPEMFETGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIQELIN 167          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_PHATR (ATP synthase subunit beta, chloroplastic OS=Phaeodactylum tricornutum GN=atpB PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 9.686e-49
Identity = 97/163 (59.51%), Postives = 125/163 (76.69%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVV-DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G V Q+IG V+D++F EG LPPI +A++++ D +   ++EV Q +G+  VR ++M  T+GL RG   ++ G+PI VPVG  TLGRI NVIGEP+DE+G++K +  LPIHR+APAF E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:    9 GYVTQIIGPVLDIKFSEGNLPPIYSAIKIILDDNTETIVEVQQLLGDNKVRAVSMRSTDGLKRGVEAIDLGTPINVPVGTPTLGRIFNVIGEPVDEQGEVKYDETLPIHRDAPAFTELETKPSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 171          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_ALKMQ (ATP synthase subunit beta OS=Alkaliphilus metalliredigens (strain QYMF) GN=atpD PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 9.686e-49
Identity = 96/165 (58.18%), Postives = 125/165 (75.76%), Query Frame = 3
Query:  306 GAIGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G +G++ Q+IGAVVD+RF  E +P +L+A+ +      + +EVAQH+G+   R +AM  T+GLVRG   ++TG+PITVPVGR TLGRI NV+GE +DE   ++ + +LPIHREAP+F EQ    +I  TGIKVVDL+APY RGGK+GLFGGAGV KTVLIMELIN
Sbjct:    4 GNVGKLVQIIGAVVDIRFSSEEIPALLSAITIQGPDGLVTVEVAQHIGDDTARCVAMRSTDGLVRGMEAIDTGAPITVPVGRETLGRIFNVLGEVVDEGKPVEAKMHLPIHREAPSFEEQEAATEIFETGIKVVDLIAPYARGGKVGLFGGAGVGKTVLIMELIN 168          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_ORITI (ATP synthase subunit beta OS=Orientia tsutsugamushi (strain Ikeda) GN=atpD PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.265e-48
Identity = 94/174 (54.02%), Postives = 132/174 (75.86%), Query Frame = 3
Query:  279 KITDEFTGKGAIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            K+  ++  +  +G+V QV+ AVVDV F  + LP IL ALE   ++ ++VLEV QH+G+ +VR +AM+ T+GL RG  V++TG  I VPVG+  LGRI+NV+G+PID+ G +K +++  IH++AP F+ Q+T ++IL+TGIKV+DLL PY  GGKIGLFGGAGV KTVLIME+IN
Sbjct:    2 KLKAKYKQQSKVGKVVQVVSAVVDVSFAGKDLPHILNALECTINNEKIVLEVVQHIGDDIVRCLAMNSTDGLFRGAEVIDTGEQIKVPVGKSILGRILNVVGQPIDDLGPIKCDNFSQIHKDAPKFINQSTSRKILITGIKVIDLLTPYISGGKIGLFGGAGVGKTVLIMEIIN 175          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_SYNFM (ATP synthase subunit beta OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=atpD PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.652e-48
Identity = 98/168 (58.33%), Postives = 126/168 (75.00%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEG-LPPILTALEVV-----DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            +G++ QVIG VVDV F EG LPP+LTAL V      D    LVLEVAQH+G+ VVRTI MD T+GLVRG  V +TG+PI +PVG   LGR++NV+G  +D  G + T+ Y+PIHR APAF EQ T  ++L TG+KV+DLL P+ RGGK+G+FGGAGV KTV++ME+I+
Sbjct:    3 LGKIVQVIGNVVDVEFGEGKLPPLLTALFVSNPGLNDQEDNLVLEVAQHLGDNVVRTIGMDLTDGLVRGMPVKDTGNPIMMPVGAAVLGRVINVVGRTVDGLGPVNTDTYMPIHRTAPAFTEQDTSVKVLETGVKVIDLLVPFPRGGKMGMFGGAGVGKTVVMMEMIH 170          
The following BLAST results are available for this feature:
BLAST of CB293415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_FERIS1.144e-4959.88ATP synthase subunit beta OS=Fervidobacterium isla... [more]
ATPB_MYXXD3.329e-4961.45ATP synthase subunit beta OS=Myxococcus xanthus (s... [more]
ATPB_CLONN4.348e-4959.51ATP synthase subunit beta OS=Clostridium novyi (st... [more]
ATPB_DESOH5.679e-4958.93ATP synthase subunit beta OS=Desulfococcus oleovor... [more]
ATPB_FERNB7.417e-4959.88ATP synthase subunit beta OS=Fervidobacterium nodo... [more]
ATPB_CLOB87.417e-4958.18ATP synthase subunit beta OS=Clostridium beijerinc... [more]
ATPB_PHATR9.686e-4959.51ATP synthase subunit beta, chloroplastic OS=Phaeod... [more]
ATPB_ALKMQ9.686e-4958.18ATP synthase subunit beta OS=Alkaliphilus metallir... [more]
ATPB_ORITI1.265e-4854.02ATP synthase subunit beta OS=Orientia tsutsugamush... [more]
ATPB_SYNFM1.652e-4858.33ATP synthase subunit beta OS=Syntrophobacter fumar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293415 ID=CB293415; Name=CB293415; organism=Citrus sinensis; type=EST; length=797bp
GGGCTGAAGGAATTCGGCCCGTGGACATTCTCTCAACATTGAAGCCCTGA
CCAATGGCTCCACGTAGACTCTTATCATCTCTCCTTCGCTCGTCTGTCCG
CCGATCTCCCTCCAAATCTTCGCTTTCTAACTCATCTGTGTTCTCCCCTG
CCGCCACGCGCCGCGCGTCTCCTTATGGGCACCTCCTCTCGCGCGTCTCA
GAGTACGCGACCTCAGCAGCCGCCACTGCCCCACCGGCACAGACTCCGAA
GTCGGATGTAAAGAAAGGCGGCGGTGGTAAAATCACCGATGAGTTTACTG
GAAAGGGCGCGATCGGTCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGAT
GTCAGATTTGACGAGGGGTTGCCTCCGATTTTGACCGCGCTTGAAGTGGT
AGATCACTCCGTTCGGTTAGTGCTTGAGGTGGCTCAGCACATGGGTGAGG
GTGTTGTTAGGACTATTGCTATGGATGGAACTGAAGGGTTGGTTCGTGGC
CAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACCTGTGGGGAGAGT
TACTCTGGGTCGTATTATGAATGTCATTGGAGAGCCTATTGATGAGAAAG
GCGATCTCAAAACTGAACATTACTTGCCCATCCACAGAGAGGCTCCAGCA
TTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCACTGGCATCAAGGT
TGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAAATTGGGCTTTTTG
GTGGTGCTGGTGTANGAAAAACTGTGCTTATTATGGAACTTATTAAC
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