CB293415

Overview
NameCB293415
Unique NameCB293415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_DESAA (ATP synthase subunit beta OS=Desulfatibacillum alkenivorans (strain AK-01) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.386e-47
Identity = 95/168 (56.55%), Postives = 125/168 (74.40%), Query Frame = 3 
Query:  312 IGQVCQVIGAVVDVRFDEG-LPPILTALEVV-----DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            IG++ QV+G VVDV F++G LP ILTAL +      D +  LV+EVAQH+G+ VVRTIAMD T+GLVRG  V +TG PI +PVG   LGR++NV+G P+D  G +  E  LPIHR AP F EQ T  ++L TG+KV+DLL P+ RGGK+G+FGGAGV KTV++ME+++
Sbjct:    5 IGKITQVMGPVVDVEFEQGNLPNILTALLITNPTINDEADNLVVEVAQHLGDNVVRTIAMDVTDGLVRGMPVKDTGDPIMMPVGEAVLGRVLNVVGRPVDGLGPVSQEKMLPIHRLAPKFTEQDTTVRVLETGVKVIDLLVPFPRGGKMGMFGGAGVGKTVIMMEMVH 172
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_CLOBH (ATP synthase subunit beta OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.386e-47
Identity = 91/163 (55.83%), Postives = 121/163 (74.23%), Query Frame = 3 
Query:  312 IGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            +G+V Q+IG ++D++FD E LP +  ALE+     +++ EV QH+G+  +R IAM+ TEGL RG   L+TG  ++VPVG+  LGR+ NV+G+PID  G+  +E   PIHR AP+F EQ+ E +I  TGIKV+DLLAPYQ+GGKIGLFGGAGV KTVLI ELIN
Sbjct:    4 LGKVIQIIGPIIDIKFDSENLPDLFNALEINAGDRKVIAEVEQHIGDDTIRAIAMEDTEGLKRGMEALDTGKSVSVPVGKEVLGRLFNVLGKPIDGAGEFISEESYPIHRPAPSFEEQSVEPEIFETGIKVIDLLAPYQKGGKIGLFGGAGVGKTVLIQELIN 166
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_CLOB6 (ATP synthase subunit beta OS=Clostridium botulinum (strain 657 / Type Ba4) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.386e-47
Identity = 91/163 (55.83%), Postives = 121/163 (74.23%), Query Frame = 3 
Query:  312 IGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            +G+V Q+IG ++D++FD E LP +  ALE+     +++ EV QH+G+  +R IAM+ TEGL RG   L+TG  ++VPVG+  LGR+ NV+G+PID  G+  +E   PIHR AP+F EQ+ E +I  TGIKV+DLLAPYQ+GGKIGLFGGAGV KTVLI ELIN
Sbjct:    4 LGKVIQIIGPIIDIKFDSENLPDLFNALEINAGDRKVIAEVEQHIGDDTIRAIAMEDTEGLKRGMEALDTGKSVSVPVGKEVLGRLFNVLGKPIDGAGEFISEESYPIHRPAPSFEEQSVEPEIFETGIKVIDLLAPYQKGGKIGLFGGAGVGKTVLIQELIN 166
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_CLOB1 (ATP synthase subunit beta OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=atpD PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.386e-47
Identity = 91/163 (55.83%), Postives = 121/163 (74.23%), Query Frame = 3 
Query:  312 IGQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            +G+V Q+IG ++D++FD E LP +  ALE+     +++ EV QH+G+  +R IAM+ TEGL RG   L+TG  ++VPVG+  LGR+ NV+G+PID  G+  +E   PIHR AP+F EQ+ E +I  TGIKV+DLLAPYQ+GGKIGLFGGAGV KTVLI ELIN
Sbjct:    4 LGKVIQIIGPIIDIKFDSENLPDLFNALEINAGDRKVIAEVEQHIGDDTIRAIAMEDTEGLKRGMEALDTGKSVSVPVGKEVLGRLFNVLGKPIDGAGEFISEESYPIHRPAPSFEEQSVEPEIFETGIKVIDLLAPYQKGGKIGLFGGAGVGKTVLIQELIN 166
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_WOLWR (ATP synthase subunit beta OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=atpD PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.116e-47
Identity = 98/165 (59.39%), Postives = 126/165 (76.36%), Query Frame = 3 
Query:  312 IGQVCQVIGAVVDVRFDEGLPPILTALE--VVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYL-PIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            IG+  +V  AVVD++F+  LP I  AL+  +      LVLEV+QH+G+ +VR IAMD T+G+ RG   ++TG+PI+VP+GR TLGRI NV+GE IDE G LK ++ L PIHR  P+F EQ  ++++LVTGIKV+DLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:    3 IGRAIKVTQAVVDIKFEGELPKIFNALKSKLKYKDKELVLEVSQHIGDNIVRCIAMDSTDGMSRGDEFVDTGAPISVPIGRSTLGRIFNVVGELIDECGPLKGKYNLEPIHRAPPSFTEQRIQEEVLVTGIKVIDLLAPYLKGGKIGLFGGAGVGKTVLIMELIN 167
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_WOLPM (ATP synthase subunit beta OS=Wolbachia pipientis wMel GN=atpD PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.116e-47
Identity = 98/165 (59.39%), Postives = 126/165 (76.36%), Query Frame = 3 
Query:  312 IGQVCQVIGAVVDVRFDEGLPPILTALE--VVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYL-PIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            IG+  +V  AVVD++F+  LP I  AL+  +      LVLEV+QH+G+ +VR IAMD T+G+ RG   ++TG+PI+VP+GR TLGRI NV+GE IDE G LK ++ L PIHR  P+F EQ  ++++LVTGIKV+DLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:    3 IGRAIKVTQAVVDIKFEGELPKIFNALKSKLKYKDKELVLEVSQHIGDNIVRCIAMDSTDGMSRGDEFVDTGAPISVPIGRSTLGRIFNVVGELIDECGPLKGKYNLEPIHRAPPSFTEQRIQEEVLVTGIKVIDLLAPYLKGGKIGLFGGAGVGKTVLIMELIN 167
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_VIBPA (ATP synthase subunit beta OS=Vibrio parahaemolyticus GN=atpD PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.116e-47
Identity = 95/164 (57.93%), Postives = 122/164 (74.39%), Query Frame = 3 
Query:  309 AIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            A G++ Q+IGAVVDV F +  +P +  AL V D   RLVLEV Q +G GVVR I M  ++GL RG  V+NTG+PI+VPVG  TLGRIMNV+G+ IDE+G++  E    IHREAP++ EQ+ E  +L TG+KV+DL+ P+ +GGKIGLFGGAGV KTV +MELIN
Sbjct:    2 ATGKIVQIIGAVVDVEFPQSEVPSVYDALNVTDSKERLVLEVQQQLGGGVVRCIVMGSSDGLRRGVEVVNTGAPISVPVGTKTLGRIMNVLGDAIDERGEIGAEEVYSIHREAPSYEEQSNETALLETGVKVIDLVCPFAKGGKIGLFGGAGVGKTVNMMELIN 165
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_VIBFM (ATP synthase subunit beta OS=Vibrio fischeri (strain MJ11) GN=atpD PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.116e-47
Identity = 96/162 (59.26%), Postives = 122/162 (75.31%), Query Frame = 3 
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ Q+IGAVVDV F +G +P +  AL VVD   RLVLEV Q +G GVVR I M  ++GL RG  V NTG+PI+VPVG  TLGRIMNV+G+ IDE GD+  E +  IHREAP++ EQ+   ++L TG+KV+DL+ P+ +GGKIGLFGGAGV KTV +MELIN
Sbjct:    4 GKIVQIIGAVVDVEFPQGEVPRVYDALNVVDAQERLVLEVQQQIGGGVVRCIVMGSSDGLRRGLTVENTGAPISVPVGTKTLGRIMNVLGDAIDECGDIDAEEHYAIHREAPSYEEQSNSTELLETGVKVIDLVCPFAKGGKIGLFGGAGVGKTVNMMELIN 165
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_VIBF1 (ATP synthase subunit beta OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=atpD PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.116e-47
Identity = 96/162 (59.26%), Postives = 122/162 (75.31%), Query Frame = 3 
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ Q+IGAVVDV F +G +P +  AL VVD   RLVLEV Q +G GVVR I M  ++GL RG  V NTG+PI+VPVG  TLGRIMNV+G+ IDE GD+  E +  IHREAP++ EQ+   ++L TG+KV+DL+ P+ +GGKIGLFGGAGV KTV +MELIN
Sbjct:    4 GKIVQIIGAVVDVEFPQGEVPRVYDALNVVDAQERLVLEVQQQIGGGVVRCIVMGSSDGLRRGLTVENTGAPISVPVGTKTLGRIMNVLGDAIDECGDIDAEEHYAIHREAPSYEEQSNSTELLETGVKVIDLVCPFAKGGKIGLFGGAGVGKTVNMMELIN 165
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_NITSB (ATP synthase subunit beta OS=Nitratiruptor sp. (strain SB155-2) GN=atpD PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.116e-47
Identity = 102/166 (61.45%), Postives = 122/166 (73.49%), Query Frame = 3 
Query:  312 IGQVCQVIGAVVDVRFDEGLPPILTALE----VVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            IG++ QV+G VVDV F++ LP I  ALE    V D  +RLVLEVA H+G+  VRTIAMD T+GLVRG  V  TG  I VPVG   LGRI NVIG+ IDE   L+ + Y  IHR AP F EQ+T+++I  TGIKVVDLLAPY++GGK GLFGGAGV KTV+IMELI+
Sbjct:    5 IGKIIQVMGPVVDVDFEDYLPAINEALEMELEVEDKKIRLVLEVAAHLGDNRVRTIAMDMTDGLVRGMEVKATGDSIKVPVGEEVLGRIFNVIGDTIDEGEPLQAKTYWSIHRSAPPFEEQSTKEEIFETGIKVVDLLAPYKKGGKTGLFGGAGVGKTVIIMELIH 170
The following BLAST results are available for this feature:
BLAST of CB293415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_DESAA2.386e-4756.55ATP synthase subunit beta OS=Desulfatibacillum alk... [more]
ATPB_CLOBH2.386e-4755.83ATP synthase subunit beta OS=Clostridium botulinum... [more]
ATPB_CLOB62.386e-4755.83ATP synthase subunit beta OS=Clostridium botulinum... [more]
ATPB_CLOB12.386e-4755.83ATP synthase subunit beta OS=Clostridium botulinum... [more]
ATPB_WOLWR3.116e-4759.39ATP synthase subunit beta OS=Wolbachia sp. subsp. ... [more]
ATPB_WOLPM3.116e-4759.39ATP synthase subunit beta OS=Wolbachia pipientis w... [more]
ATPB_VIBPA3.116e-4757.93ATP synthase subunit beta OS=Vibrio parahaemolytic... [more]
ATPB_VIBFM3.116e-4759.26ATP synthase subunit beta OS=Vibrio fischeri (stra... [more]
ATPB_VIBF13.116e-4759.26ATP synthase subunit beta OS=Vibrio fischeri (stra... [more]
ATPB_NITSB3.116e-4761.45ATP synthase subunit beta OS=Nitratiruptor sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293415 ID=CB293415; Name=CB293415; organism=Citrus sinensis; type=EST; length=797bp
GGGCTGAAGGAATTCGGCCCGTGGACATTCTCTCAACATTGAAGCCCTGA
CCAATGGCTCCACGTAGACTCTTATCATCTCTCCTTCGCTCGTCTGTCCG
CCGATCTCCCTCCAAATCTTCGCTTTCTAACTCATCTGTGTTCTCCCCTG
CCGCCACGCGCCGCGCGTCTCCTTATGGGCACCTCCTCTCGCGCGTCTCA
GAGTACGCGACCTCAGCAGCCGCCACTGCCCCACCGGCACAGACTCCGAA
GTCGGATGTAAAGAAAGGCGGCGGTGGTAAAATCACCGATGAGTTTACTG
GAAAGGGCGCGATCGGTCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGAT
GTCAGATTTGACGAGGGGTTGCCTCCGATTTTGACCGCGCTTGAAGTGGT
AGATCACTCCGTTCGGTTAGTGCTTGAGGTGGCTCAGCACATGGGTGAGG
GTGTTGTTAGGACTATTGCTATGGATGGAACTGAAGGGTTGGTTCGTGGC
CAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACCTGTGGGGAGAGT
TACTCTGGGTCGTATTATGAATGTCATTGGAGAGCCTATTGATGAGAAAG
GCGATCTCAAAACTGAACATTACTTGCCCATCCACAGAGAGGCTCCAGCA
TTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCACTGGCATCAAGGT
TGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAAATTGGGCTTTTTG
GTGGTGCTGGTGTANGAAAAACTGTGCTTATTATGGAACTTATTAAC
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