CB293415

Overview
NameCB293415
Unique NameCB293415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_BRUA2 (ATP synthase subunit beta OS=Brucella abortus (strain 2308) GN=atpD PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 7.906e-59
Identity = 120/165 (72.73%), Postives = 134/165 (81.21%), Query Frame = 3
Query:  306 GAIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            GAIG + QVIGAVVDV+F EG LP IL ALEV +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ   +TG PI VPVG  TLGRIMNVIGEP+DE G +KT+    IH+ AP ++EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:   50 GAIGHITQVIGAVVDVKFPEGQLPLILNALEVDNQGHRLVLEVAQHLGEDTVRTIAMDATEGLVRGQEARDTGEPIMVPVGVETLGRIMNVIGEPVDEAGPIKTKATRAIHQNAPEYIEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 214          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_NEUCR (ATP synthase subunit beta, mitochondrial OS=Neurospora crassa GN=atp-2 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.761e-58
Identity = 114/162 (70.37%), Postives = 135/162 (83.33%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ QVIGAVVDV+FD + LPPIL ALE  ++  +LVLEV+QH+GE VVR IAMDGTEGLVRG +  +TG+PIT+PVG  TLGRI+NV G+PIDE+G +KT+ + PIH EAP FVEQ+T  +ILVTGIKVVDLLAPY RGGKIGLFGGAGV KTV I ELIN
Sbjct:   49 GKIYQVIGAVVDVKFDTDKLPPILNALETQNNGQKLVLEVSQHLGENVVRCIAMDGTEGLVRGAKASDTGAPITIPVGPATLGRIINVTGDPIDERGPIKTDKFRPIHAEAPEFVEQSTTAEILVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELIN 210          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_PARL1 (ATP synthase subunit beta OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=atpD PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.004e-58
Identity = 117/163 (71.78%), Postives = 132/163 (80.98%), Query Frame = 3
Query:  309 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            A+G++ QVIGAVVDV F + LP IL ALE  +   RLVLEVAQH+GE  VRTIAMD TEGL RGQ V +TG+ ITVPVG  TLGRI+NVIGEP+DE G +K E    IH+EAP+FVEQ+TE Q+LVTGIKVVDLLAPY RGGKIGLFGGAGV KTVLI ELIN
Sbjct:    4 AVGKIAQVIGAVVDVTFTDNLPAILNALETTNGGNRLVLEVAQHLGENTVRTIAMDTTEGLTRGQEVRDTGNAITVPVGEGTLGRIINVIGEPVDEAGPVKHEARREIHQEAPSFVEQSTEAQMLVTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIQELIN 166          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_PELUB (ATP synthase subunit beta OS=Pelagibacter ubique GN=atpD PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.692e-58
Identity = 116/161 (72.05%), Postives = 132/161 (81.99%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ Q+IGAVVDV+FD  LP IL+ALE  +   RLVLEVAQH+GE  VRTIAMD TEGL RG  V  TG+PI VPVG  TLGRI+NVIGEPIDEKG++KT+   PIHR AP F +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:    4 GKITQIIGAVVDVKFDGELPEILSALECKNGDNRLVLEVAQHLGESSVRTIAMDATEGLKRGDEVTATGAPIQVPVGPETLGRIINVIGEPIDEKGEVKTKEKWPIHRAAPEFSDQSTETEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 164          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_NITWN (ATP synthase subunit beta OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=atpD PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.692e-58
Identity = 114/167 (68.26%), Postives = 134/167 (80.24%), Query Frame = 3
Query:  297 TGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            T    +G++ QVIGAVVDV+F+  LP IL A+E  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE+G +K +   PIH EAP++ +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    3 TAANQVGRITQVIGAVVDVQFEGHLPAILNAIETKNGENRLVLEVAQHLGESTVRTIAMDTTEGLVRGQDVTDTGAPIRVPVGAGTLGRIMNVIGEPVDEQGPVKADDLRPIHAEAPSYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELIN 169          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_ROSDO (ATP synthase subunit beta OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpD PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 8.741e-58
Identity = 112/163 (68.71%), Postives = 132/163 (80.98%), Query Frame = 3
Query:  309 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            A+G++ QVIGAVVDV+F + LP IL ALE  ++  RLVLEVAQH+GE  VR IAMD TEGLVRGQ V +T  PI++PVG  TLGRIMNV+GEPIDEKG + T+    IH+EAPAF EQ+T  ++L TGIKV+DLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:    4 AVGKITQVIGAVVDVQFADHLPEILNALETNNNGNRLVLEVAQHLGENTVRAIAMDATEGLVRGQTVTDTDGPISIPVGNATLGRIMNVVGEPIDEKGPVATDETRSIHQEAPAFAEQSTSSEVLETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 166          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_RHOS5 (ATP synthase subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=atpD PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 8.741e-58
Identity = 115/161 (71.43%), Postives = 130/161 (80.75%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G+V QVIGAVVDV+FD GLP IL ALE V++  RLVLEVAQH+GE  VRTIAMD TEGLVRG  V + G PI+VPVG  TLGRI+NVIGEPIDEKG +  +    IH+ AP F EQ+T  +ILVTGIKV+DLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:    7 GKVTQVIGAVVDVQFDGGLPAILNALETVNNDKRLVLEVAQHLGENTVRTIAMDATEGLVRGAPVTDLGGPISVPVGDATLGRILNVIGEPIDEKGPVSGDSTRAIHQPAPTFAEQSTTSEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELIN 167          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPA (ATP synthase subunit beta OS=Rhodopseudomonas palustris GN=atpD PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 8.741e-58
Identity = 114/161 (70.81%), Postives = 134/161 (83.23%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ QVIGAVVDV+F+  LP IL A+E  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI+VPVG  TLGRIMNVIGEP+DE+G +K+E    IH+EAPA+ +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    9 GRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGAPISVPVGAGTLGRIMNVIGEPVDEQGPIKSEGLRAIHQEAPAYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELIN 169          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_BARBK (ATP synthase subunit beta OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=atpD PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.142e-57
Identity = 112/165 (67.88%), Postives = 134/165 (81.21%), Query Frame = 3
Query:  303 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            KGA+G++ QVIGA+VDV+F+  LP IL ALE      RL+LEVAQH+GE  VRTIAMD T+GLVRGQ+V +TG+ I VPVG  TLGRIMNVIGEP+DE G + T     IH++AP ++EQ+TE +ILVTGIKVVDLLAPY +GGK+GLFGGAGV KTVLIMELIN
Sbjct:   60 KGAVGEIKQVIGAIVDVQFEGALPNILNALETDRLGSRLILEVAQHLGENTVRTIAMDTTDGLVRGQKVFDTGTQICVPVGEATLGRIMNVIGEPVDEVGPIVTTKTRSIHQKAPEYIEQSTESEILVTGIKVVDLLAPYSKGGKVGLFGGAGVGKTVLIMELIN 224          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_JANSC (ATP synthase subunit beta OS=Jannaschia sp. (strain CCS1) GN=atpD PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.491e-57
Identity = 112/163 (68.71%), Postives = 133/163 (81.60%), Query Frame = 3
Query:  309 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            A+G++ QVIGAVVDV+F++ LP IL ALE  +   RLVLEVAQH+GEG VRTIAMD +EGLVRGQ V +T  PITVPVG  TLGRI+NV+GEP+DE G +  E    IH++AP F +Q+TE ++LVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:    4 AVGKITQVIGAVVDVQFNDHLPEILNALETENDGKRLVLEVAQHLGEGTVRTIAMDSSEGLVRGQEVTDTDGPITVPVGPGTLGRILNVVGEPVDEGGPVDAEERRGIHQDAPEFADQSTEAEVLVTGIKVVDLLAPYSKGGKIGLFGGAGVGKTVLIMELIN 166          
The following BLAST results are available for this feature:
BLAST of CB293415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_BRUA27.906e-5972.73ATP synthase subunit beta OS=Brucella abortus (str... [more]
ATPB_NEUCR1.761e-5870.37ATP synthase subunit beta, mitochondrial OS=Neuros... [more]
ATPB_PARL13.004e-5871.78ATP synthase subunit beta OS=Parvibaculum lavament... [more]
ATPB_PELUB6.692e-5872.05ATP synthase subunit beta OS=Pelagibacter ubique G... [more]
ATPB_NITWN6.692e-5868.26ATP synthase subunit beta OS=Nitrobacter winograds... [more]
ATPB_ROSDO8.741e-5868.71ATP synthase subunit beta OS=Roseobacter denitrifi... [more]
ATPB_RHOS58.741e-5871.43ATP synthase subunit beta OS=Rhodobacter sphaeroid... [more]
ATPB_RHOPA8.741e-5870.81ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_BARBK1.142e-5767.88ATP synthase subunit beta OS=Bartonella bacillifor... [more]
ATPB_JANSC1.491e-5768.71ATP synthase subunit beta OS=Jannaschia sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293415 ID=CB293415; Name=CB293415; organism=Citrus sinensis; type=EST; length=797bp
GGGCTGAAGGAATTCGGCCCGTGGACATTCTCTCAACATTGAAGCCCTGA
CCAATGGCTCCACGTAGACTCTTATCATCTCTCCTTCGCTCGTCTGTCCG
CCGATCTCCCTCCAAATCTTCGCTTTCTAACTCATCTGTGTTCTCCCCTG
CCGCCACGCGCCGCGCGTCTCCTTATGGGCACCTCCTCTCGCGCGTCTCA
GAGTACGCGACCTCAGCAGCCGCCACTGCCCCACCGGCACAGACTCCGAA
GTCGGATGTAAAGAAAGGCGGCGGTGGTAAAATCACCGATGAGTTTACTG
GAAAGGGCGCGATCGGTCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGAT
GTCAGATTTGACGAGGGGTTGCCTCCGATTTTGACCGCGCTTGAAGTGGT
AGATCACTCCGTTCGGTTAGTGCTTGAGGTGGCTCAGCACATGGGTGAGG
GTGTTGTTAGGACTATTGCTATGGATGGAACTGAAGGGTTGGTTCGTGGC
CAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACCTGTGGGGAGAGT
TACTCTGGGTCGTATTATGAATGTCATTGGAGAGCCTATTGATGAGAAAG
GCGATCTCAAAACTGAACATTACTTGCCCATCCACAGAGAGGCTCCAGCA
TTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCACTGGCATCAAGGT
TGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAAATTGGGCTTTTTG
GTGGTGCTGGTGTANGAAAAACTGTGCTTATTATGGAACTTATTAAC
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