CB293415

Overview
NameCB293415
Unique NameCB293415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_SODGM (ATP synthase subunit beta OS=Sodalis glossinidius (strain morsitans) GN=atpD PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 93/163 (57.06%), Postives = 118/163 (72.39%), Query Frame = 3
Query:  309 AIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELI 794
            A G V QVIGAVVDV F  + +P +  ALEV + + +LVLEV Q +G GVVR IAM  ++GL RG +V +    I VPVG+ TLGRIMNV+GEP+D KGD+  E    IHR AP++ E A+ Q +L TGIKV+DL+ P+ +GGK+GLFGGAGV KTV +MELI
Sbjct:    2 ATGNVIQVIGAVVDVEFPQDAVPKVYNALEVENGAAKLVLEVEQQLGGGVVRCIAMGSSDGLRRGLKVTDLERAIEVPVGKATLGRIMNVLGEPVDMKGDIGEEERWSIHRPAPSYEELASSQDLLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELI 164          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_PHAVU (ATP synthase subunit beta, chloroplastic OS=Phaseolus vulgaris GN=atpB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 95/171 (55.56%), Postives = 117/171 (68.42%), Query Frame = 3
Query:  303 KGAIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            K  +G + Q+IG V+DV F  G +P I  AL V     V   + +  EV Q +G   VR +AM  T+GL+RG  V++TG+P++VPVG  TLGRI NV+GEPID  G + T    PIHR AP F++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   17 KKNLGHIVQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGTPLSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPTFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_ORYSJ (ATP synthase subunit beta, chloroplastic OS=Oryza sativa subsp. japonica GN=atpB PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 95/167 (56.89%), Postives = 116/167 (69.46%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHS-----VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ Q+IG V+DV F  G LP I  AL V         + +  EV Q +G   VR +AM  T+GL+RG  V++TG+P++VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF+E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   21 GRIDQIIGPVLDVTFPPGKLPYIYNALVVKSRDTDGKQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTSATFPIHRSAPAFIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_ORYSI (ATP synthase subunit beta, chloroplastic OS=Oryza sativa subsp. indica GN=atpB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 95/167 (56.89%), Postives = 116/167 (69.46%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHS-----VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ Q+IG V+DV F  G LP I  AL V         + +  EV Q +G   VR +AM  T+GL+RG  V++TG+P++VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF+E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   21 GRIDQIIGPVLDVTFPPGKLPYIYNALVVKSRDTDGKQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTSATFPIHRSAPAFIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_ORYSA (ATP synthase subunit beta, chloroplastic OS=Oryza sativa GN=atpB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 95/167 (56.89%), Postives = 116/167 (69.46%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHS-----VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ Q+IG V+DV F  G LP I  AL V         + +  EV Q +G   VR +AM  T+GL+RG  V++TG+P++VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF+E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   21 GRIDQIIGPVLDVTFPPGKLPYIYNALVVKSRDTDGKQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTSATFPIHRSAPAFIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_ORYNI (ATP synthase subunit beta, chloroplastic OS=Oryza nivara GN=atpB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 95/167 (56.89%), Postives = 116/167 (69.46%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHS-----VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ Q+IG V+DV F  G LP I  AL V         + +  EV Q +G   VR +AM  T+GL+RG  V++TG+P++VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF+E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   21 GRIDQIIGPVLDVTFPPGKLPYIYNALVVKSRDTDGKQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTSATFPIHRSAPAFIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_OENPA (ATP synthase subunit beta, chloroplastic OS=Oenothera parviflora GN=atpB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 94/167 (56.29%), Postives = 116/167 (69.46%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHS-----VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ Q+IG V+DV F  G +P I  AL V         + +  EV Q +G   VR +AM  T+GL RG  V++TG+P++VPVG  TLGRI NV+GEP+DE G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   21 GRIAQIIGPVLDVTFPPGKMPNIYNALVVKGRDTGGQEINVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDELGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_OENGL (ATP synthase subunit beta, chloroplastic OS=Oenothera glazioviana GN=atpB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 94/167 (56.29%), Postives = 116/167 (69.46%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHS-----VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ Q+IG V+DV F  G +P I  AL V         + +  EV Q +G   VR +AM  T+GL RG  V++TG+P++VPVG  TLGRI NV+GEP+DE G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   21 GRIAQIIGPVLDVTFPPGKMPNIYNALVVKGRDTGGQEINVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDELGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_OENEH (ATP synthase subunit beta, chloroplastic OS=Oenothera elata subsp. hookeri GN=atpB PE=3 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 94/167 (56.29%), Postives = 116/167 (69.46%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHS-----VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ Q+IG V+DV F  G +P I  AL V         + +  EV Q +G   VR +AM  T+GL RG  V++TG+P++VPVG  TLGRI NV+GEP+DE G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   21 GRIAQIIGPVLDVTFPPGKMPNIYNALVVKGRDTGGQEINVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDELGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_OENBI (ATP synthase subunit beta, chloroplastic OS=Oenothera biennis GN=atpB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 94/167 (56.29%), Postives = 116/167 (69.46%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHS-----VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ Q+IG V+DV F  G +P I  AL V         + +  EV Q +G   VR +AM  T+GL RG  V++TG+P++VPVG  TLGRI NV+GEP+DE G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   21 GRIAQIIGPVLDVTFPPGKMPNIYNALVVKGRDTGGQEINVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDELGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
The following BLAST results are available for this feature:
BLAST of CB293415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_SODGM4.211e-4457.06ATP synthase subunit beta OS=Sodalis glossinidius ... [more]
ATPB_PHAVU4.211e-4455.56ATP synthase subunit beta, chloroplastic OS=Phaseo... [more]
ATPB_ORYSJ4.211e-4456.89ATP synthase subunit beta, chloroplastic OS=Oryza ... [more]
ATPB_ORYSI4.211e-4456.89ATP synthase subunit beta, chloroplastic OS=Oryza ... [more]
ATPB_ORYSA4.211e-4456.89ATP synthase subunit beta, chloroplastic OS=Oryza ... [more]
ATPB_ORYNI4.211e-4456.89ATP synthase subunit beta, chloroplastic OS=Oryza ... [more]
ATPB_OENPA4.211e-4456.29ATP synthase subunit beta, chloroplastic OS=Oenoth... [more]
ATPB_OENGL4.211e-4456.29ATP synthase subunit beta, chloroplastic OS=Oenoth... [more]
ATPB_OENEH4.211e-4456.29ATP synthase subunit beta, chloroplastic OS=Oenoth... [more]
ATPB_OENBI4.211e-4456.29ATP synthase subunit beta, chloroplastic OS=Oenoth... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293415 ID=CB293415; Name=CB293415; organism=Citrus sinensis; type=EST; length=797bp
GGGCTGAAGGAATTCGGCCCGTGGACATTCTCTCAACATTGAAGCCCTGA
CCAATGGCTCCACGTAGACTCTTATCATCTCTCCTTCGCTCGTCTGTCCG
CCGATCTCCCTCCAAATCTTCGCTTTCTAACTCATCTGTGTTCTCCCCTG
CCGCCACGCGCCGCGCGTCTCCTTATGGGCACCTCCTCTCGCGCGTCTCA
GAGTACGCGACCTCAGCAGCCGCCACTGCCCCACCGGCACAGACTCCGAA
GTCGGATGTAAAGAAAGGCGGCGGTGGTAAAATCACCGATGAGTTTACTG
GAAAGGGCGCGATCGGTCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGAT
GTCAGATTTGACGAGGGGTTGCCTCCGATTTTGACCGCGCTTGAAGTGGT
AGATCACTCCGTTCGGTTAGTGCTTGAGGTGGCTCAGCACATGGGTGAGG
GTGTTGTTAGGACTATTGCTATGGATGGAACTGAAGGGTTGGTTCGTGGC
CAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACCTGTGGGGAGAGT
TACTCTGGGTCGTATTATGAATGTCATTGGAGAGCCTATTGATGAGAAAG
GCGATCTCAAAACTGAACATTACTTGCCCATCCACAGAGAGGCTCCAGCA
TTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCACTGGCATCAAGGT
TGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAAATTGGGCTTTTTG
GTGGTGCTGGTGTANGAAAAACTGTGCTTATTATGGAACTTATTAAC
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