CB293415

Overview
NameCB293415
Unique NameCB293415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_OENAR (ATP synthase subunit beta, chloroplastic OS=Oenothera argillicola GN=atpB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 94/167 (56.29%), Postives = 116/167 (69.46%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHS-----VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ Q+IG V+DV F  G +P I  AL V         + +  EV Q +G   VR +AM  T+GL RG  V++TG+P++VPVG  TLGRI NV+GEP+DE G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   21 GRIAQIIGPVLDVTFPPGKMPNIYNALVVKGRDTGGQEINVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDELGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_NITOC (ATP synthase subunit beta OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=atpD PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 93/161 (57.76%), Postives = 119/161 (73.91%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFD-EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELI 794
            G+  Q+IGAVVDV F  E +P +  AL + D  V L LEV Q +G+GVVRTIAM G++GL RG  V NTG+PI+VPVG  TLGRIM+V+GEP+DE G +  E    IHR+APA+ E +   ++L TGIKV+DL+ P+ +GGK+GLFGGAGV KTV +MELI
Sbjct:    4 GKTVQIIGAVVDVEFPRESIPKVYHALRIDD--VGLTLEVQQQLGDGVVRTIAMGGSDGLRRGMAVTNTGAPISVPVGTKTLGRIMDVLGEPVDEAGPVGEEERWSIHRKAPAYEELSPATELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELI 162          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_COFAR (ATP synthase subunit beta, chloroplastic OS=Coffea arabica GN=atpB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 95/171 (55.56%), Postives = 118/171 (69.01%), Query Frame = 3
Query:  303 KGAIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            K  +G++ Q+IG V+DV F  G +P I  AL V     V   + +  EV Q +G   VR +AM  T+GL RG  V++TG+P++VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   17 KKNMGRIVQIIGPVLDVAFPAGKMPNIYNALVVKGRDTVGQPINVTCEVQQLLGNNRVRAVAMSSTDGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGAVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_CARPA (ATP synthase subunit beta, chloroplastic OS=Carica papaya GN=atpB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 94/171 (54.97%), Postives = 118/171 (69.01%), Query Frame = 3
Query:  303 KGAIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            K  +G++ Q+IG V+DV F  G +P I  AL V     V   + +  EV Q +G   VR +AM  T+GL RG  V++TG+P++VPVG  TLGRI NV+GEP+D  G + T    PIH+ APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   17 KKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQINVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHKSAPAFIQLDTKFSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_BEARE (ATP synthase subunit beta, chloroplastic OS=Beaucarnea recurvata GN=atpB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 94/168 (55.95%), Postives = 116/168 (69.05%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            +G + Q+IG V+DV F  G +P I  AL V     V   + +  EV Q +G   VR +AM  T+GL RG  V++TG+P++VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   20 LGHIAQIIGPVLDVVFPPGKMPNIYNALVVKGRDTVGQQINVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_BACV8 (ATP synthase subunit beta OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=atpD PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 99/170 (58.24%), Postives = 116/170 (68.24%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRF-------DEGLPPILTALEVVDHSVR-LVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            IG + QVIG VVDV F       D  LP I  AL +  +  R LV+EV QH+GE  VRT+AMD T+GL RG  V+ TG PIT+PVG    GR+MNV+GE +D    L  E   PIHRE P F E +T Q++L TGIKV+DLL PY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:    5 IGHISQVIGPVVDVYFEGKGIDTDLLLPSIHDALTIKRNDGRILVVEVQQHIGEDTVRTVAMDSTDGLQRGMEVIPTGHPITMPVGNQIKGRLMNVVGEAVDGMRPLSKEGAFPIHREPPKFDELSTVQEVLFTGIKVIDLLEPYSKGGKIGLFGGAGVGKTVLIMELIN 174          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_ATRBE (ATP synthase subunit beta, chloroplastic OS=Atropa belladonna GN=atpB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.211e-44
Identity = 96/171 (56.14%), Postives = 117/171 (68.42%), Query Frame = 3
Query:  303 KGAIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            K  +G+V Q+IG V+DV F  G +P I  AL V     V   + +  EV Q +G   VR +AM  T+GL RG  V++ G+PI+VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   17 KKNLGRVVQIIGPVLDVAFPPGKMPNIYNALVVQGRDSVGQPINVACEVQQLLGNNRVRAVAMSATDGLTRGMEVIDKGAPISVPVGGATLGRIFNVLGEPVDNLGPVDTSTMSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_SOYBN (ATP synthase subunit beta, chloroplastic OS=Glycine max GN=atpB PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.500e-44
Identity = 94/171 (54.97%), Postives = 118/171 (69.01%), Query Frame = 3
Query:  303 KGAIGQVCQVIGAVVDVRFDEG-LPPILTAL-----EVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            K  +G++ Q+IG V+DV F  G +P I  AL     + V   + +  EV Q +G   +R +AM  TEGL+RG  V++TG+ ++VPVG  TLGRI NV+GEPID  G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   17 KKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTVGQQINVTCEVQQLLGNNRIRAVAMSATEGLMRGMEVIDTGAALSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLAIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_SOLTU (ATP synthase subunit beta, chloroplastic OS=Solanum tuberosum GN=atpB PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.500e-44
Identity = 96/167 (57.49%), Postives = 115/167 (68.86%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G+V Q+IG V+DV F  G +P I  AL V     V   + +  EV Q +G   VR +AM  T+GL RG  V++TG+PI VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   21 GRVVQIIGPVLDVAFPPGKMPNIYNALVVQGRDSVGQPINVACEVQQLLGNNRVRAVAMSATDGLTRGMAVIDTGAPIRVPVGGATLGRIFNVLGEPVDNLGPVDTSTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_SERP5 (ATP synthase subunit beta OS=Serratia proteamaculans (strain 568) GN=atpD PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.500e-44
Identity = 93/163 (57.06%), Postives = 119/163 (73.01%), Query Frame = 3
Query:  309 AIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELI 794
            A G++ QVIGAVVDV F  + +P +  ALEV + + +LVLEV Q +G GVVR IAM  ++GL RG +V +   PI VPVG+ TLGRIMNV+GEPID KGD+  E    IHR AP++ + A  Q +L TGIKV+DL+ P+ +GGK+GLFGGAGV KTV +MELI
Sbjct:    2 ATGKIIQVIGAVVDVEFPQDAVPKVYNALEVENGANKLVLEVQQQLGGGVVRCIAMGTSDGLRRGLKVTDLDHPIEVPVGKATLGRIMNVLGEPIDMKGDIGEEERWAIHRPAPSYEDLANSQDLLETGIKVMDLICPFAKGGKVGLFGGAGVGKTVNMMELI 164          
The following BLAST results are available for this feature:
BLAST of CB293415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_OENAR4.211e-4456.29ATP synthase subunit beta, chloroplastic OS=Oenoth... [more]
ATPB_NITOC4.211e-4457.76ATP synthase subunit beta OS=Nitrosococcus oceani ... [more]
ATPB_COFAR4.211e-4455.56ATP synthase subunit beta, chloroplastic OS=Coffea... [more]
ATPB_CARPA4.211e-4454.97ATP synthase subunit beta, chloroplastic OS=Carica... [more]
ATPB_BEARE4.211e-4455.95ATP synthase subunit beta, chloroplastic OS=Beauca... [more]
ATPB_BACV84.211e-4458.24ATP synthase subunit beta OS=Bacteroides vulgatus ... [more]
ATPB_ATRBE4.211e-4456.14ATP synthase subunit beta, chloroplastic OS=Atropa... [more]
ATPB_SOYBN5.500e-4454.97ATP synthase subunit beta, chloroplastic OS=Glycin... [more]
ATPB_SOLTU5.500e-4457.49ATP synthase subunit beta, chloroplastic OS=Solanu... [more]
ATPB_SERP55.500e-4457.06ATP synthase subunit beta OS=Serratia proteamacula... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293415 ID=CB293415; Name=CB293415; organism=Citrus sinensis; type=EST; length=797bp
GGGCTGAAGGAATTCGGCCCGTGGACATTCTCTCAACATTGAAGCCCTGA
CCAATGGCTCCACGTAGACTCTTATCATCTCTCCTTCGCTCGTCTGTCCG
CCGATCTCCCTCCAAATCTTCGCTTTCTAACTCATCTGTGTTCTCCCCTG
CCGCCACGCGCCGCGCGTCTCCTTATGGGCACCTCCTCTCGCGCGTCTCA
GAGTACGCGACCTCAGCAGCCGCCACTGCCCCACCGGCACAGACTCCGAA
GTCGGATGTAAAGAAAGGCGGCGGTGGTAAAATCACCGATGAGTTTACTG
GAAAGGGCGCGATCGGTCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGAT
GTCAGATTTGACGAGGGGTTGCCTCCGATTTTGACCGCGCTTGAAGTGGT
AGATCACTCCGTTCGGTTAGTGCTTGAGGTGGCTCAGCACATGGGTGAGG
GTGTTGTTAGGACTATTGCTATGGATGGAACTGAAGGGTTGGTTCGTGGC
CAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACCTGTGGGGAGAGT
TACTCTGGGTCGTATTATGAATGTCATTGGAGAGCCTATTGATGAGAAAG
GCGATCTCAAAACTGAACATTACTTGCCCATCCACAGAGAGGCTCCAGCA
TTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCACTGGCATCAAGGT
TGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAAATTGGGCTTTTTG
GTGGTGCTGGTGTANGAAAAACTGTGCTTATTATGGAACTTATTAAC
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