CB293415

Overview
NameCB293415
Unique NameCB293415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_POPTM (ATP synthase subunit beta, chloroplastic OS=Populus tremuloides GN=atpB PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.183e-44
Identity = 95/171 (55.56%), Postives = 118/171 (69.01%), Query Frame = 3
Query:  303 KGAIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            K  +G + Q+IG V+DV F  G +P I  AL V     V   + +  EV Q +G   VR +AM  TEGL+RG  V++TG+P++VPVG  TLGRI NV+GEP+D+   + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   17 KKNLGHIAQIIGPVLDVVFPPGKMPNIYNALVVKGRDTVSQQINVTCEVQQLLGNNRVRAVAMSATEGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDDLRPVDTGTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_MESVI (ATP synthase subunit beta, chloroplastic OS=Mesostigma viride GN=atpB PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.183e-44
Identity = 92/168 (54.76%), Postives = 118/168 (70.24%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            IG + Q+IG V+D +F  G +P I  AL V         + +  EV Q +G+  VR +AM  T+GL+RG  +L+TG+P++VPVG +TLGRI NV+GEP+D  GD+  +   PIHR +P F+E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:    9 IGSITQIIGPVLDAKFPPGQMPNIYNALIVKAKNEAGEDLSVTCEVQQLLGDNQVRAVAMSATDGLMRGLEILDTGAPLSVPVGEITLGRIFNVLGEPVDGLGDVVAKTKSPIHRNSPTFIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 176          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_MANSM (ATP synthase subunit beta OS=Mannheimia succiniciproducens (strain MBEL55E) GN=atpD PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.183e-44
Identity = 90/161 (55.90%), Postives = 118/161 (73.29%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELI 794
            G++ Q+IGAV+DV F E  +P +  AL+V +    L LEV Q +G G+VR IAM  ++GL RG  V NTG PI+VPVG  TLGRIMNV+GEP+DE+G +  E    IHREAP++ EQ+   ++L TGIKV+DL+ P+ +GGK+GLFGGAGV KTV +MELI
Sbjct:    4 GKIVQIIGAVIDVEFPENAVPKVYDALKVAEGG--LTLEVQQQLGGGIVRCIAMGSSDGLKRGLSVSNTGKPISVPVGTKTLGRIMNVLGEPVDEQGPIGAEEEWAIHREAPSYEEQSNSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELI 162          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_LOTJA (ATP synthase subunit beta, chloroplastic OS=Lotus japonicus GN=atpB PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.183e-44
Identity = 94/167 (56.29%), Postives = 116/167 (69.46%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTAL-----EVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ Q+IG V+DV F  G +P I  AL     + V   + +  EV Q +G   VR +AM  T+GL RG  V++TG+ ++VPVG VTLGRI NV+GEPID  G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   21 GRIAQIIGPVLDVTFPPGKMPNIYNALIVKGRDTVGQQINVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAALSVPVGGVTLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_LOLPR (ATP synthase subunit beta, chloroplastic OS=Lolium perenne GN=atpB PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.183e-44
Identity = 89/167 (53.29%), Postives = 117/167 (70.06%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEGLPP------ILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ Q+IG V+DV F  G  P      ++ +++  +  + +  EV Q +G   VR +AM  T+GL+RG  V++TG+P++VPVG  TLGRI NV+GEP+D  G + +    PIHR APAF+E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   21 GRIDQIIGPVLDVTFPPGKLPYIYNALVVQSIDTANKQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDSSATFPIHRSAPAFIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_ENT38 (ATP synthase subunit beta OS=Enterobacter sp. (strain 638) GN=atpD PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.183e-44
Identity = 92/163 (56.44%), Postives = 120/163 (73.62%), Query Frame = 3
Query:  309 AIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELI 794
            A G++ QVIGAVVDV F  + +P +  ALEV + +  LVLEV Q +G G+VRTIAM  ++GL RG  V +   PI VPVG+ TLGRIMNV+G+PID KGD+  E    IHR AP++ E ++ Q++L TGIKV+DL+ P+ +GGK+GLFGGAGV KTV +MELI
Sbjct:    2 ATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNESLVLEVQQQLGGGIVRTIAMGSSDGLRRGLAVKDLEHPIEVPVGKATLGRIMNVLGQPIDMKGDIGEEDRWAIHRAAPSYEELSSSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELI 164          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_DAUCA (ATP synthase subunit beta, chloroplastic OS=Daucus carota GN=atpB PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.183e-44
Identity = 94/171 (54.97%), Postives = 116/171 (67.84%), Query Frame = 3
Query:  303 KGAIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            K  +G + Q+IG V+DV F  G +P I  AL V         + +  EV Q +G   VR +AM  T+GL RG  V++TG+P++VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   17 KKNLGNITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQQINVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVMDTGAPLSVPVGGTTLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_BRASC (ATP synthase subunit beta, chloroplastic OS=Brasenia schreberi GN=atpB PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.183e-44
Identity = 91/172 (52.91%), Postives = 115/172 (66.86%), Query Frame = 3
Query:  300 GKGAIGQVCQVIGAVVDVRFDEGLPP------ILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            GK   G++ Q+IG V+DV F  G  P      ++   +     + +  EV Q +G   VR +AM  T+GL RG  V++TG+P++VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   16 GKKIPGRIAQIIGPVLDVAFPPGKMPNIYNSLVVXGRDTAGQQINVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGCTLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_BARSC (ATP synthase subunit beta, chloroplastic OS=Barnardia scilloides GN=atpB PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 7.183e-44
Identity = 94/168 (55.95%), Postives = 117/168 (69.64%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            +G++ Q+IG V+DV F  G +P I  AL V     V   + ++ EV Q +G   VR +AM  T+GL RG  VL+TG+ ++VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   20 LGRIAQIIGPVLDVVFPPGKMPNIYNALVVKGRDTVGQQINVICEVQQLLGNNRVRAVAMSATDGLTRGMEVLDTGAALSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_BACFR (ATP synthase subunit beta OS=Bacteroides fragilis GN=atpD PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 7.183e-44
Identity = 95/168 (56.55%), Postives = 117/168 (69.64%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRF-----DEGLPPILTALEVVDHS-VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            IG + QVIG VVDV F     D  LP I  ALE+  H+  +L++EV QH+GE  VRT+AMD T+GL RG +V  TG PIT+PVG    GR+MNV+G+ ID   +L  +    IHR+ P F +  T Q++L TGIKV+DLL PY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:    5 IGHISQVIGPVVDVYFEGTESDLILPSIHDALEIKRHNGKKLIVEVQQHIGENTVRTVAMDSTDGLQRGMKVFPTGGPITMPVGEQIKGRLMNVVGDSIDGMKELNRDGAYSIHRDPPKFEDLTTVQEVLFTGIKVIDLLEPYSKGGKIGLFGGAGVGKTVLIMELIN 172          
The following BLAST results are available for this feature:
BLAST of CB293415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_POPTM7.183e-4455.56ATP synthase subunit beta, chloroplastic OS=Populu... [more]
ATPB_MESVI7.183e-4454.76ATP synthase subunit beta, chloroplastic OS=Mesost... [more]
ATPB_MANSM7.183e-4455.90ATP synthase subunit beta OS=Mannheimia succinicip... [more]
ATPB_LOTJA7.183e-4456.29ATP synthase subunit beta, chloroplastic OS=Lotus ... [more]
ATPB_LOLPR7.183e-4453.29ATP synthase subunit beta, chloroplastic OS=Lolium... [more]
ATPB_ENT387.183e-4456.44ATP synthase subunit beta OS=Enterobacter sp. (str... [more]
ATPB_DAUCA7.183e-4454.97ATP synthase subunit beta, chloroplastic OS=Daucus... [more]
ATPB_BRASC7.183e-4452.91ATP synthase subunit beta, chloroplastic OS=Brasen... [more]
ATPB_BARSC7.183e-4455.95ATP synthase subunit beta, chloroplastic OS=Barnar... [more]
ATPB_BACFR7.183e-4456.55ATP synthase subunit beta OS=Bacteroides fragilis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293415 ID=CB293415; Name=CB293415; organism=Citrus sinensis; type=EST; length=797bp
GGGCTGAAGGAATTCGGCCCGTGGACATTCTCTCAACATTGAAGCCCTGA
CCAATGGCTCCACGTAGACTCTTATCATCTCTCCTTCGCTCGTCTGTCCG
CCGATCTCCCTCCAAATCTTCGCTTTCTAACTCATCTGTGTTCTCCCCTG
CCGCCACGCGCCGCGCGTCTCCTTATGGGCACCTCCTCTCGCGCGTCTCA
GAGTACGCGACCTCAGCAGCCGCCACTGCCCCACCGGCACAGACTCCGAA
GTCGGATGTAAAGAAAGGCGGCGGTGGTAAAATCACCGATGAGTTTACTG
GAAAGGGCGCGATCGGTCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGAT
GTCAGATTTGACGAGGGGTTGCCTCCGATTTTGACCGCGCTTGAAGTGGT
AGATCACTCCGTTCGGTTAGTGCTTGAGGTGGCTCAGCACATGGGTGAGG
GTGTTGTTAGGACTATTGCTATGGATGGAACTGAAGGGTTGGTTCGTGGC
CAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACCTGTGGGGAGAGT
TACTCTGGGTCGTATTATGAATGTCATTGGAGAGCCTATTGATGAGAAAG
GCGATCTCAAAACTGAACATTACTTGCCCATCCACAGAGAGGCTCCAGCA
TTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCACTGGCATCAAGGT
TGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAAATTGGGCTTTTTG
GTGGTGCTGGTGTANGAAAAACTGTGCTTATTATGGAACTTATTAAC
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