CB293415

Overview
NameCB293415
Unique NameCB293415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_BACC0 (ATP synthase subunit beta OS=Bacillus cereus (strain AH820) GN=atpD PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.382e-44
Identity = 98/168 (58.33%), Postives = 120/168 (71.43%), Query Frame = 3 
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDH-----SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G+V Q++G VVDV+FD G LP I  AL V        S+ L  EVA H+G+  VRT+AM  T+GLVRG  V +TG  I+VPVG  TLGR+ NV+G+ ID  G++  +    PIHR+APAF E +T+ +IL TGIKVVDLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    4 GRVTQIMGPVVDVKFDGGKLPEIYNALTVKQSNENGTSINLTFEVALHLGDDTVRTVAMSSTDGLVRGTEVEDTGKAISVPVGDATLGRVFNVLGDAIDLDGEVPADVRRDPIHRQAPAFEELSTKVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIN 171
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_BACAN (ATP synthase subunit beta OS=Bacillus anthracis GN=atpD PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.382e-44
Identity = 98/168 (58.33%), Postives = 120/168 (71.43%), Query Frame = 3 
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDH-----SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G+V Q++G VVDV+FD G LP I  AL V        S+ L  EVA H+G+  VRT+AM  T+GLVRG  V +TG  I+VPVG  TLGR+ NV+G+ ID  G++  +    PIHR+APAF E +T+ +IL TGIKVVDLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    4 GRVTQIMGPVVDVKFDGGKLPEIYNALTVKQSNENGTSINLTFEVALHLGDDTVRTVAMSSTDGLVRGTEVEDTGKAISVPVGDATLGRVFNVLGDAIDLDGEVPADVRRDPIHRQAPAFEELSTKVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIN 171
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_BACAH (ATP synthase subunit beta OS=Bacillus thuringiensis (strain Al Hakam) GN=atpD PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.382e-44
Identity = 98/168 (58.33%), Postives = 120/168 (71.43%), Query Frame = 3 
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDH-----SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G+V Q++G VVDV+FD G LP I  AL V        S+ L  EVA H+G+  VRT+AM  T+GLVRG  V +TG  I+VPVG  TLGR+ NV+G+ ID  G++  +    PIHR+APAF E +T+ +IL TGIKVVDLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    4 GRVTQIMGPVVDVKFDGGKLPEIYNALTVKQSNENGTSINLTFEVALHLGDDTVRTVAMSSTDGLVRGTEVEDTGKAISVPVGDATLGRVFNVLGDAIDLDGEVPADVRRDPIHRQAPAFEELSTKVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIN 171
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_BACAC (ATP synthase subunit beta OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=atpD PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.382e-44
Identity = 98/168 (58.33%), Postives = 120/168 (71.43%), Query Frame = 3 
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDH-----SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G+V Q++G VVDV+FD G LP I  AL V        S+ L  EVA H+G+  VRT+AM  T+GLVRG  V +TG  I+VPVG  TLGR+ NV+G+ ID  G++  +    PIHR+APAF E +T+ +IL TGIKVVDLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    4 GRVTQIMGPVVDVKFDGGKLPEIYNALTVKQSNENGTSINLTFEVALHLGDDTVRTVAMSSTDGLVRGTEVEDTGKAISVPVGDATLGRVFNVLGDAIDLDGEVPADVRRDPIHRQAPAFEELSTKVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIN 171
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_BACAA (ATP synthase subunit beta OS=Bacillus anthracis (strain A0248) GN=atpD PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.382e-44
Identity = 98/168 (58.33%), Postives = 120/168 (71.43%), Query Frame = 3 
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDH-----SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G+V Q++G VVDV+FD G LP I  AL V        S+ L  EVA H+G+  VRT+AM  T+GLVRG  V +TG  I+VPVG  TLGR+ NV+G+ ID  G++  +    PIHR+APAF E +T+ +IL TGIKVVDLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    4 GRVTQIMGPVVDVKFDGGKLPEIYNALTVKQSNENGTSINLTFEVALHLGDDTVRTVAMSSTDGLVRGTEVEDTGKAISVPVGDATLGRVFNVLGDAIDLDGEVPADVRRDPIHRQAPAFEELSTKVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIN 171
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_SYNY3 (ATP synthase subunit beta OS=Synechocystis sp. (strain PCC 6803) GN=atpD PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.225e-43
Identity = 91/168 (54.17%), Postives = 118/168 (70.24%), Query Frame = 3 
Query:  312 IGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            +G++ QVIG V+D +F  G LP I  AL+V       + V +  EV Q +G+  VR +AM  T+GLVRG  V++TG+PI+VPVG  TLGRI NV+GEP+D KG +      PIHR AP  V+  T+ Q+  TGIKV+DLL PY++GGKIGLFGGAGV KTV++MELIN
Sbjct:   10 VGKITQVIGPVIDAQFPSGKLPRIYNALKVQGRNSAGNEVAVTCEVQQLLGDNQVRAVAMSSTDGLVRGMDVVDTGAPISVPVGTGTLGRIFNVLGEPVDNKGPVPAGETFPIHRPAPKLVDLETKPQVFETGIKVIDLLTPYRQGGKIGLFGGAGVGKTVIMMELIN 177
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_STIHE (ATP synthase subunit beta, chloroplastic OS=Stigeoclonium helveticum GN=atpB PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.225e-43
Identity = 91/167 (54.49%), Postives = 115/167 (68.86%), Query Frame = 3 
Query:  315 GQVCQVIGAVVDVRFDEGLPP------ILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ Q+IG VVD+ F  G  P      +++        + +  EV Q +G+  VR +AM+ TEGL+RG    +TG+P+ VPVG+ TLGRI NV+GEP+D  G ++TE  LPIHR APAF +  T   I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   12 GRLIQIIGPVVDIAFPAGNVPNIYNAVVISGKNTAGEDMCVTCEVQQLLGDRCVRAVAMNPTEGLMRGMDATDTGTPLMVPVGKTTLGRIFNVLGEPVDNLGPVETEQKLPIHRSAPAFTDLDTRLAIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 178
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_SALPK (ATP synthase subunit beta OS=Salmonella paratyphi A (strain AKU_12601) GN=atpD PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.225e-43
Identity = 91/163 (55.83%), Postives = 120/163 (73.62%), Query Frame = 3 
Query:  309 AIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELI 794
            A G++ QVIGAVVDV F  + +P +  ALEV + + +LVLEV Q +G G+VRTIAM  ++GL RG  V +   PI VPVG+ TLGRIMNV+GEP+D KG++  E    IHR AP++ E +  Q++L TGIKV+DL+ P+ +GGK+GLFGGAGV KTV +MELI
Sbjct:    2 ATGKIVQVIGAVVDVDFPQDAVPRVYDALEVQNGNEKLVLEVQQQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELI 164
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_SALPA (ATP synthase subunit beta OS=Salmonella paratyphi A GN=atpD PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.225e-43
Identity = 91/163 (55.83%), Postives = 120/163 (73.62%), Query Frame = 3 
Query:  309 AIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELI 794
            A G++ QVIGAVVDV F  + +P +  ALEV + + +LVLEV Q +G G+VRTIAM  ++GL RG  V +   PI VPVG+ TLGRIMNV+GEP+D KG++  E    IHR AP++ E +  Q++L TGIKV+DL+ P+ +GGK+GLFGGAGV KTV +MELI
Sbjct:    2 ATGKIVQVIGAVVDVDFPQDAVPRVYDALEVQNGNEKLVLEVQQQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELI 164
[Close]
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_PELHO (ATP synthase subunit beta, chloroplastic OS=Pelargonium hortorum GN=atpB PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.225e-43
Identity = 94/176 (53.41%), Postives = 118/176 (67.05%), Query Frame = 3 
Query:  288 DEFTGKGAIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            D    K  +G++ Q+IG V+DV F  G +P I  AL V     V   + +  EV Q +G   VR +AM  T+GL+RG  V++TG+P++VPVG  TLGRI NV+GEP+D  G +      PIH+  PAF+E  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGV KTVLIMELIN
Sbjct:   12 DSTLQKKKLGRIVQIIGPVLDVAFPRGKMPYIYNALVVQGRDTVGQQIHVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDNRTTSPIHKSPPAFIELDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELIN 187
The following BLAST results are available for this feature:
BLAST of CB293415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_BACC09.382e-4458.33ATP synthase subunit beta OS=Bacillus cereus (stra... [more]
ATPB_BACAN9.382e-4458.33ATP synthase subunit beta OS=Bacillus anthracis GN... [more]
ATPB_BACAH9.382e-4458.33ATP synthase subunit beta OS=Bacillus thuringiensi... [more]
ATPB_BACAC9.382e-4458.33ATP synthase subunit beta OS=Bacillus anthracis (s... [more]
ATPB_BACAA9.382e-4458.33ATP synthase subunit beta OS=Bacillus anthracis (s... [more]
ATPB_SYNY31.225e-4354.17ATP synthase subunit beta OS=Synechocystis sp. (st... [more]
ATPB_STIHE1.225e-4354.49ATP synthase subunit beta, chloroplastic OS=Stigeo... [more]
ATPB_SALPK1.225e-4355.83ATP synthase subunit beta OS=Salmonella paratyphi ... [more]
ATPB_SALPA1.225e-4355.83ATP synthase subunit beta OS=Salmonella paratyphi ... [more]
ATPB_PELHO1.225e-4353.41ATP synthase subunit beta, chloroplastic OS=Pelarg... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06ac10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293415 ID=CB293415; Name=CB293415; organism=Citrus sinensis; type=EST; length=797bp
GGGCTGAAGGAATTCGGCCCGTGGACATTCTCTCAACATTGAAGCCCTGA
CCAATGGCTCCACGTAGACTCTTATCATCTCTCCTTCGCTCGTCTGTCCG
CCGATCTCCCTCCAAATCTTCGCTTTCTAACTCATCTGTGTTCTCCCCTG
CCGCCACGCGCCGCGCGTCTCCTTATGGGCACCTCCTCTCGCGCGTCTCA
GAGTACGCGACCTCAGCAGCCGCCACTGCCCCACCGGCACAGACTCCGAA
GTCGGATGTAAAGAAAGGCGGCGGTGGTAAAATCACCGATGAGTTTACTG
GAAAGGGCGCGATCGGTCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGAT
GTCAGATTTGACGAGGGGTTGCCTCCGATTTTGACCGCGCTTGAAGTGGT
AGATCACTCCGTTCGGTTAGTGCTTGAGGTGGCTCAGCACATGGGTGAGG
GTGTTGTTAGGACTATTGCTATGGATGGAACTGAAGGGTTGGTTCGTGGC
CAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACCTGTGGGGAGAGT
TACTCTGGGTCGTATTATGAATGTCATTGGAGAGCCTATTGATGAGAAAG
GCGATCTCAAAACTGAACATTACTTGCCCATCCACAGAGAGGCTCCAGCA
TTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCACTGGCATCAAGGT
TGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAAATTGGGCTTTTTG
GTGGTGCTGGTGTANGAAAAACTGTGCTTATTATGGAACTTATTAAC
back to top