CB293415

Overview
NameCB293415
Unique NameCB293415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_SPHWW (ATP synthase subunit beta OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=atpD PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.947e-57
Identity = 113/162 (69.75%), Postives = 129/162 (79.63%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            +G++ QVIGAVVDV FD  LP IL ALE  ++  RLVLEVAQH+GEG VRTIAMD T+GL RGQ V +TGS I VPVG  TLGRI+NVIGEPIDE+G +      PIH EAP FV+Q+T+  ILVTGIKV+DLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:   10 VGRISQVIGAVVDVSFDGSLPAILNALETTNNGNRLVLEVAQHLGEGTVRTIAMDATDGLTRGQEVTDTGSQIRVPVGPQTLGRILNVIGEPIDERGPVNATQTSPIHAEAPLFVDQSTDASILVTGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELIN 171          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_OLICO (ATP synthase subunit beta OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=atpD PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.947e-57
Identity = 113/162 (69.75%), Postives = 131/162 (80.86%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            +G++ QVIGAVVDV+FD  LP IL A+E  +   RLVLEVAQH+GE  VR IAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMNV+GEP+DE G +K +    IH+EAPA+ EQ+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    8 VGRITQVIGAVVDVQFDGYLPAILNAIETTNQGHRLVLEVAQHLGESTVRAIAMDTTEGLVRGQEVTDTGAPIKVPVGEGTLGRIMNVVGEPVDEGGPVKADGTRAIHQEAPAYTEQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELIN 169          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_NOVAD (ATP synthase subunit beta OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=atpD PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.947e-57
Identity = 115/161 (71.43%), Postives = 130/161 (80.75%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ QVIGAVVDV FD  LP IL+ALE  ++  RLVLEVAQH+GE  VRTIAMD T+GL RGQ V NTG+ I+VPVG  TLGRIMNVIGEPIDE+G +  E   PIH +AP F+EQ+TE  ILVTGIKV+DLLAPY RGGKIGLFGGAGV KTVLI ELIN
Sbjct:    9 GKISQVIGAVVDVTFDGELPAILSALETDNNGNRLVLEVAQHLGENTVRTIAMDSTDGLTRGQPVTNTGAQISVPVGPKTLGRIMNVIGEPIDERGPVGAEQTAPIHAKAPEFIEQSTEAAILVTGIKVIDLLAPYARGGKIGLFGGAGVGKTVLIQELIN 169          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_SILPO (ATP synthase subunit beta OS=Silicibacter pomeroyi GN=atpD PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.338e-57
Identity = 113/163 (69.33%), Postives = 130/163 (79.75%), Query Frame = 3
Query:  309 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            A G+V Q+IGAVVDV+FD+ LP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD TEGLVRG  V +TG PI+VPVG  TLGRI+NVIGEP+DEKG +       IH+ AP+F EQ+T   ILVTGIKV+DLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:    4 AKGKVTQIIGAVVDVQFDDALPEILNALETENNGKRLVLEVAQHLGENTVRTIAMDATEGLVRGAVVTDTGGPISVPVGAATLGRILNVIGEPVDEKGPVNATETRAIHQPAPSFDEQSTSSDILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELIN 166          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_RHOP5 (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisA53) GN=atpD PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.338e-57
Identity = 114/161 (70.81%), Postives = 131/161 (81.37%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ QVIGAVVDV+F+  LP IL A+E  + + RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TGSPI VPVG  TLGRIMNVIGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    9 GRITQVIGAVVDVQFEGHLPAILNAIETKNGNNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGSPIMVPVGLGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPLYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELIN 169          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_MESSB (ATP synthase subunit beta OS=Mesorhizobium sp. (strain BNC1) GN=atpD PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.665e-57
Identity = 115/167 (68.86%), Postives = 130/167 (77.84%), Query Frame = 3
Query:  297 TGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            T  G IG V QVIGAVVDV+F E LP IL ALE  +   RLVLEVAQH+GE  VR IAMD T+GLVRGQ V +TG+PI+VPVG   LGRI+NVIGEP+DE G +    +  IH+ AP +VEQ+TE QILVTGIKV+DLLAPY RGGKIGLFGGAGV KTVLI ELIN
Sbjct:   46 TASGKIGSVRQVIGAVVDVQFQENLPAILNALETDNQGNRLVLEVAQHLGENTVRCIAMDSTDGLVRGQEVRDTGAPISVPVGPEMLGRIINVIGEPVDEAGPITATEFRGIHQPAPEYVEQSTEAQILVTGIKVLDLLAPYARGGKIGLFGGAGVGKTVLIQELIN 212          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_BART1 (ATP synthase subunit beta OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=atpD PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.665e-57
Identity = 113/172 (65.70%), Postives = 136/172 (79.07%), Query Frame = 3
Query:  282 ITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            +  E   KG +G++ QVIGAVVDV+F+  LP IL ALE  +   RLVLEVAQH+GE  VRTIAMD T+GL+RGQ+V++TG+ I+VPVG  TLGRIMNVIGEP+D  G + +     IH+EAP +VEQ+T  +ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:   58 VKKEERAKGTVGEIKQVIGAVVDVQFEGALPNILNALETENLGNRLVLEVAQHLGENTVRTIAMDTTDGLMRGQKVVDTGAQISVPVGEATLGRIMNVIGEPVDNVGPIASTKTRSIHQEAPEYVEQSTVSEILVTGIKVVDLLAPYSKGGKIGLFGGAGVGKTVLIMELIN 229          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB2_DINSH (ATP synthase subunit beta 2 OS=Dinoroseobacter shibae (strain DFL 12) GN=atpD2 PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.665e-57
Identity = 113/163 (69.33%), Postives = 130/163 (79.75%), Query Frame = 3
Query:  309 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            A G+V QVIGAVVDV+F++ LP IL AL   ++  +LVLEVAQH+GE  VRTIAMD TEGLVRG  V +TG PIT+PVG  TLGRIMNVIGEPIDEKG ++      IH+ AP F EQ+T  +ILVTGIKV+DLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:    4 AKGKVTQVIGAVVDVQFEDTLPEILNALNTENNGKKLVLEVAQHLGENTVRTIAMDATEGLVRGAEVTDTGGPITIPVGNATLGRIMNVIGEPIDEKGPVEASESRAIHQPAPEFSEQSTGSEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELIN 166          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB1_BRASB (ATP synthase subunit beta 1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.665e-57
Identity = 114/167 (68.26%), Postives = 133/167 (79.64%), Query Frame = 3
Query:  297 TGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            T    IG++ QVIGAVVDV+F+  LP IL +LE  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRI+NVIGEPIDE G +K +    IH+EAP++ +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    3 TAANQIGRITQVIGAVVDVQFEGHLPAILNSLETKNAGNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGAPIRVPVGEGTLGRIINVIGEPIDEAGPVKADSLRAIHQEAPSYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELIN 169          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPS (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisB5) GN=atpD PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.399e-57
Identity = 114/161 (70.81%), Postives = 130/161 (80.75%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ QVIGAVVDV+F+  LP IL A+E  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TGSPI VPVG  TLGRIMNVIGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    9 GRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGSPIMVPVGIGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPLYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELIN 169          
The following BLAST results are available for this feature:
BLAST of CB293415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_SPHWW1.947e-5769.75ATP synthase subunit beta OS=Sphingomonas wittichi... [more]
ATPB_OLICO1.947e-5769.75ATP synthase subunit beta OS=Oligotropha carboxido... [more]
ATPB_NOVAD1.947e-5771.43ATP synthase subunit beta OS=Novosphingobium aroma... [more]
ATPB_SILPO4.338e-5769.33ATP synthase subunit beta OS=Silicibacter pomeroyi... [more]
ATPB_RHOP54.338e-5770.81ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_MESSB5.665e-5768.86ATP synthase subunit beta OS=Mesorhizobium sp. (st... [more]
ATPB_BART15.665e-5765.70ATP synthase subunit beta OS=Bartonella tribocorum... [more]
ATPB2_DINSH5.665e-5769.33ATP synthase subunit beta 2 OS=Dinoroseobacter shi... [more]
ATPB1_BRASB5.665e-5768.26ATP synthase subunit beta 1 OS=Bradyrhizobium sp. ... [more]
ATPB_RHOPS7.399e-5770.81ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293415 ID=CB293415; Name=CB293415; organism=Citrus sinensis; type=EST; length=797bp
GGGCTGAAGGAATTCGGCCCGTGGACATTCTCTCAACATTGAAGCCCTGA
CCAATGGCTCCACGTAGACTCTTATCATCTCTCCTTCGCTCGTCTGTCCG
CCGATCTCCCTCCAAATCTTCGCTTTCTAACTCATCTGTGTTCTCCCCTG
CCGCCACGCGCCGCGCGTCTCCTTATGGGCACCTCCTCTCGCGCGTCTCA
GAGTACGCGACCTCAGCAGCCGCCACTGCCCCACCGGCACAGACTCCGAA
GTCGGATGTAAAGAAAGGCGGCGGTGGTAAAATCACCGATGAGTTTACTG
GAAAGGGCGCGATCGGTCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGAT
GTCAGATTTGACGAGGGGTTGCCTCCGATTTTGACCGCGCTTGAAGTGGT
AGATCACTCCGTTCGGTTAGTGCTTGAGGTGGCTCAGCACATGGGTGAGG
GTGTTGTTAGGACTATTGCTATGGATGGAACTGAAGGGTTGGTTCGTGGC
CAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACCTGTGGGGAGAGT
TACTCTGGGTCGTATTATGAATGTCATTGGAGAGCCTATTGATGAGAAAG
GCGATCTCAAAACTGAACATTACTTGCCCATCCACAGAGAGGCTCCAGCA
TTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCACTGGCATCAAGGT
TGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAAATTGGGCTTTTTG
GTGGTGCTGGTGTANGAAAAACTGTGCTTATTATGGAACTTATTAAC
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