CB293415

Overview
NameCB293415
Unique NameCB293415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11971 contig Csv1_Contig11971:9..804. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_BRAJA (ATP synthase subunit beta OS=Bradyrhizobium japonicum GN=atpD PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.399e-57
Identity = 115/161 (71.43%), Postives = 131/161 (81.37%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G+V QVIGAVVDV+F+  LP IL +LE  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TGSPI VPVG  TLGRI+NVIGEPIDE G +K+E    IH+EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    6 GRVTQVIGAVVDVQFEGHLPAILNSLETKNGGNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGSPIRVPVGEGTLGRIINVIGEPIDEAGPVKSEGLRAIHQEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELIN 166          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_XANP2 (ATP synthase subunit beta OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=atpD PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.664e-57
Identity = 113/162 (69.75%), Postives = 130/162 (80.25%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            +G++ QVIGAVVDV+FD  LP IL ALE  +   RLVLEVAQH+GE  VR IAMD TEGLVRG  V +TG+PI VPVG  TLGRIMNVIGEP+DE G ++ E    IH+ AP++ EQATE +ILVTGIKVVDLLAPY +GGK+GLFGGAGV KTVLIMELIN
Sbjct:    5 VGRITQVIGAVVDVQFDGHLPEILNALETTNQGNRLVLEVAQHLGESTVRCIAMDATEGLVRGLEVTDTGAPIQVPVGAGTLGRIMNVIGEPVDELGPIEAEATRGIHQPAPSYAEQATEAEILVTGIKVVDLLAPYAKGGKVGLFGGAGVGKTVLIMELIN 166          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_ERYLH (ATP synthase subunit beta OS=Erythrobacter litoralis (strain HTCC2594) GN=atpD PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.664e-57
Identity = 113/161 (70.19%), Postives = 130/161 (80.75%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G + QVIGAVVDV+F   LP ILTALE  +    LVLEVAQH+GE  VRTIAMDGT+GLVRGQ V+NTG+ I+VPVG  TLGRIMNV+GEPID +G +  +   PIH EAPAFV+Q+T+  ILVTGIKV+DLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:   13 GTISQVIGAVVDVQFPGELPAILTALETENGDTTLVLEVAQHLGENTVRTIAMDGTDGLVRGQEVINTGAQISVPVGPKTLGRIMNVVGEPIDMRGPVGADKANPIHAEAPAFVDQSTDAAILVTGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELIN 173          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_RHOPB (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain BisB18) GN=atpD PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.262e-56
Identity = 113/161 (70.19%), Postives = 131/161 (81.37%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ QVIGAVVDV+F+  LP IL A+E  + + RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    9 GRITQVIGAVVDVQFEGHLPAILNAVETKNGNNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGNPIMVPVGVGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELIN 169          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_RHOP2 (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain HaA2) GN=atpD PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.262e-56
Identity = 113/161 (70.19%), Postives = 130/161 (80.75%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ QVIGAVVDV+F+  LP IL A+E  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE+G +  E   PIH EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    9 GRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGNPIMVPVGVGTLGRIMNVIGEPVDEQGPVANEGLRPIHAEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELIN 169          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_BRASO (ATP synthase subunit beta OS=Bradyrhizobium sp. (strain ORS278) GN=atpD PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.262e-56
Identity = 114/167 (68.26%), Postives = 132/167 (79.04%), Query Frame = 3
Query:  297 TGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            T    IG+V QVIGAVVDV+F+  LP IL +LE  +   RLVLEVAQH+GE  VR IAMD TEGLVRGQ V +TG+PI VPVG  TLGRI+NVIGEPIDE G +K ++   IH+EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    3 TAANQIGRVTQVIGAVVDVQFEGHLPAILNSLETKNGGNRLVLEVAQHLGESTVRAIAMDTTEGLVRGQEVTDTGAPIRVPVGEGTLGRIINVIGEPIDEAGPVKADNVRAIHQEAPTYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELIN 169          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_ZYMMO (ATP synthase subunit beta OS=Zymomonas mobilis GN=atpD PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.648e-56
Identity = 108/167 (64.67%), Postives = 133/167 (79.64%), Query Frame = 3
Query:  297 TGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            + K  IG++ QVIG VVDV F+E LPP+LTALE  +    +VLEVAQH+GE VVRTI+MD T+GLVRGQ V++TGS I VPVG  TLGRIMNV+G P+DE+G + ++  +PIH +AP F EQ+T+  IL TGIKV+DLLAPY +GGK+GLFGGAGV KTVLI ELIN
Sbjct:    5 SSKKNIGRISQVIGPVVDVLFEEKLPPLLTALETKNQDATVVLEVAQHLGENVVRTISMDTTDGLVRGQEVVDTGSEIRVPVGPETLGRIMNVVGRPVDERGPIGSKQTMPIHADAPPFTEQSTDTAILTTGIKVIDLLAPYSKGGKVGLFGGAGVGKTVLIQELIN 171          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_NITHX (ATP synthase subunit beta OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=atpD PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.648e-56
Identity = 113/161 (70.19%), Postives = 131/161 (81.37%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ QVIGAVVDV+F+  LP IL A+E  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG+PI VPVG  TLGRIMNVIGEP+DE+G +K E    IH+EAP + +Q+TE +ILVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    9 GRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVKDTGNPILVPVGVGTLGRIMNVIGEPVDEQGPVKAEDMRAIHQEAPLYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIQELIN 169          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_AZOC5 (ATP synthase subunit beta OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=atpD PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.812e-56
Identity = 113/161 (70.19%), Postives = 129/161 (80.12%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ QVIGAVVDV+FD  LP IL ALE  +   RLVLEVAQH+GE  VRTIAMD TEGLVRGQ V +TG PI VPVG  TLGRIMNVIGE +DE G +  E    IH++AP++ EQ+TE ++LVTGIKVVDLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:    6 GRITQVIGAVVDVQFDSHLPEILNALETTNQGNRLVLEVAQHLGENTVRTIAMDSTEGLVRGQAVEDTGGPIMVPVGEATLGRIMNVIGEAVDELGPVVGEAKRAIHQQAPSYSEQSTEAEMLVTGIKVVDLLAPYSKGGKIGLFGGAGVGKTVLIMELIN 166          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_YEAST (ATP synthase subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=ATP2 PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 3.672e-56
Identity = 112/162 (69.14%), Postives = 132/162 (81.48%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G+V  VIGA+VDV F++  LP IL ALE+     +LVLEVAQH+GE  VRTIAMDGTEGLVRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++   PIH + P+F EQ+T  +IL TGIKVVDLLAPY RGGKIGLFGGAGV KTV I ELIN
Sbjct:   44 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELIN 205          
The following BLAST results are available for this feature:
BLAST of CB293415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_BRAJA7.399e-5771.43ATP synthase subunit beta OS=Bradyrhizobium japoni... [more]
ATPB_XANP29.664e-5769.75ATP synthase subunit beta OS=Xanthobacter autotrop... [more]
ATPB_ERYLH9.664e-5770.19ATP synthase subunit beta OS=Erythrobacter litoral... [more]
ATPB_RHOPB1.262e-5670.19ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_RHOP21.262e-5670.19ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_BRASO1.262e-5668.26ATP synthase subunit beta OS=Bradyrhizobium sp. (s... [more]
ATPB_ZYMMO1.648e-5664.67ATP synthase subunit beta OS=Zymomonas mobilis GN=... [more]
ATPB_NITHX1.648e-5670.19ATP synthase subunit beta OS=Nitrobacter hamburgen... [more]
ATPB_AZOC52.812e-5670.19ATP synthase subunit beta OS=Azorhizobium caulinod... [more]
ATPB_YEAST3.672e-5669.14ATP synthase subunit beta, mitochondrial OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293415 ID=CB293415; Name=CB293415; organism=Citrus sinensis; type=EST; length=797bp
GGGCTGAAGGAATTCGGCCCGTGGACATTCTCTCAACATTGAAGCCCTGA
CCAATGGCTCCACGTAGACTCTTATCATCTCTCCTTCGCTCGTCTGTCCG
CCGATCTCCCTCCAAATCTTCGCTTTCTAACTCATCTGTGTTCTCCCCTG
CCGCCACGCGCCGCGCGTCTCCTTATGGGCACCTCCTCTCGCGCGTCTCA
GAGTACGCGACCTCAGCAGCCGCCACTGCCCCACCGGCACAGACTCCGAA
GTCGGATGTAAAGAAAGGCGGCGGTGGTAAAATCACCGATGAGTTTACTG
GAAAGGGCGCGATCGGTCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGAT
GTCAGATTTGACGAGGGGTTGCCTCCGATTTTGACCGCGCTTGAAGTGGT
AGATCACTCCGTTCGGTTAGTGCTTGAGGTGGCTCAGCACATGGGTGAGG
GTGTTGTTAGGACTATTGCTATGGATGGAACTGAAGGGTTGGTTCGTGGC
CAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACCTGTGGGGAGAGT
TACTCTGGGTCGTATTATGAATGTCATTGGAGAGCCTATTGATGAGAAAG
GCGATCTCAAAACTGAACATTACTTGCCCATCCACAGAGAGGCTCCAGCA
TTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCACTGGCATCAAGGT
TGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAAATTGGGCTTTTTG
GTGGTGCTGGTGTANGAAAAACTGTGCTTATTATGGAACTTATTAAC
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