CB293415

Overview
NameCB293415
Unique NameCB293415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_MAGSM (ATP synthase subunit beta OS=Magnetococcus sp. (strain MC-1) GN=atpD PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.672e-56
Identity = 111/161 (68.94%), Postives = 128/161 (79.50%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G+V QV+G VVDVRF+  LP IL AL +V +  RLVLEVA HMGEG VR IAMD T+G+VRG  V +TG  I VPVGR TLGRI+NV+GEP DEKG ++T   LPIHR APAF +QAT  +IL TGIKV+DLLAPY +GGK+GLFGGAGV KTVLIMELIN
Sbjct:    7 GKVVQVVGPVVDVRFEGELPNILNALHMVRNGERLVLEVATHMGEGTVRAIAMDSTDGVVRGMEVTDTGDTIRVPVGRQTLGRILNVVGEPQDEKGPVETTETLPIHRPAPAFAQQATSAEILETGIKVIDLLAPYAKGGKVGLFGGAGVGKTVLIMELIN 167          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_BARHE (ATP synthase subunit beta OS=Bartonella henselae GN=atpD PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.796e-56
Identity = 112/165 (67.88%), Postives = 132/165 (80.00%), Query Frame = 3
Query:  303 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            + A+G + QVIGAVVDV+F+  LP IL ALE  +   RLVLEVAQH+GE  VRTIAMD T+GLVRGQ+V +TG+ I+VPVG  TLGRIMNVIGEP+D  G + T     IH+EAP +VEQ+T  +ILVTGIKVVDLLAPY +GGK+GLFGGAGV KTVLIMELIN
Sbjct:   54 EAAVGVIKQVIGAVVDVQFEGPLPNILNALETDNLGNRLVLEVAQHLGENTVRTIAMDTTDGLVRGQKVFDTGTQISVPVGEATLGRIMNVIGEPVDNVGPIATSKTRSIHQEAPEYVEQSTASEILVTGIKVVDLLAPYSKGGKVGLFGGAGVGKTVLIMELIN 218          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_RHILO (ATP synthase subunit beta OS=Rhizobium loti GN=atpD PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.068e-55
Identity = 112/164 (68.29%), Postives = 130/164 (79.27%), Query Frame = 3
Query:  306 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G +G+V QVIGAVVDV+F + LP IL ALE  +   RLVLEVAQH+GE  VR IAMD TEGLVRGQ V +TG+PITVPVG   LGRI+NVIGEP+DE+G +       IH+ AP +VEQ+TE QIL+TGIKV+DLLAPY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:    7 GVVGKVRQVIGAVVDVQFGDHLPAILNALETTNVGNRLVLEVAQHLGENTVRCIAMDSTEGLVRGQEVRDTGAPITVPVGPGMLGRIINVIGEPVDEEGPVDAIEMRSIHQPAPTYVEQSTEAQILITGIKVLDLLAPYAKGGKIGLFGGAGVGKTVLIQELIN 170          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_SCHPO (ATP synthase subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=atp2 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.823e-55
Identity = 114/164 (69.51%), Postives = 132/164 (80.49%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG--LPPILTALEV-VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G + QVIGAVVD +F++   LP IL ALEV +  + RLVLEVAQH+GE  VRTIAMDGTEGLVRG  V++TGSPI++PVG  TLGRIMNVIGEP+DE+G +K   Y PIH +AP+F EQ+T  +IL TGIKVVDLLAPY RGGKIGLFGGAGV KTV I ELIN
Sbjct:   55 GSIKQVIGAVVDCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELIN 218          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_BARQU (ATP synthase subunit beta OS=Bartonella quintana GN=atpD PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.823e-55
Identity = 110/165 (66.67%), Postives = 131/165 (79.39%), Query Frame = 3
Query:  303 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            KGA+G++ QVIGAVVDV+F+  LP IL ALE  +   RLVLEVAQH+GE  VRTIAMD T+GL RGQ+V +T + I VPVG  TLGRIMNVIGEP+D  G + T     IH++AP +V+Q+T  +ILVTGIKVVDLLAPY +GGK+GLFGGAGV KTVLIMELIN
Sbjct:   59 KGAVGEIKQVIGAVVDVQFEGALPNILNALETENLGNRLVLEVAQHLGENTVRTIAMDTTDGLTRGQKVFDTETQICVPVGEATLGRIMNVIGEPVDNVGPIATTKTRSIHQKAPEYVDQSTASEILVTGIKVVDLLAPYSKGGKVGLFGGAGVGKTVLIMELIN 223          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_KLULA (ATP synthase subunit beta, mitochondrial OS=Kluyveromyces lactis GN=ATP2 PE=3 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 2.380e-55
Identity = 111/162 (68.52%), Postives = 132/162 (81.48%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G+V  VIGA+VDV+F++G LP IL ALE+     +LVLEVAQH+GE  VRTIAMDGTEGLVRG+ V +TG+PI+VPVGR TLGRI+NVIGEPIDE+G + ++   PIH + P FVEQ+T  ++L TGIKVVDLLAPY RGGKIGLFGGAGV KTV I ELIN
Sbjct:   38 GKVRAVIGAIVDVQFEQGQLPAILNALEIDTPEGKLVLEVAQHLGENTVRTIAMDGTEGLVRGENVSDTGAPISVPVGRETLGRIINVIGEPIDERGPINSKMRKPIHADPPLFVEQSTAAEVLETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELIN 199          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_SPHAL (ATP synthase subunit beta OS=Sphingopyxis alaskensis GN=atpD PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.109e-55
Identity = 110/163 (67.48%), Postives = 131/163 (80.37%), Query Frame = 3
Query:  309 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            A G++ QVIGAVVDV+F   LP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD T+GL RGQ V +TG+ I+VPVG  TLGRI+NVIGEPIDE+G + ++   PIH +AP FV+Q+TE  ILVTGIKV+DL+APY +GGKIGLFGGAGV KTVLI ELIN
Sbjct:   39 ATGRIAQVIGAVVDVQFTGELPAILNALETDNNGNRLVLEVAQHLGENTVRTIAMDATDGLTRGQPVRDTGAQISVPVGPQTLGRILNVIGEPIDERGPVNSDMTAPIHAKAPEFVDQSTEASILVTGIKVIDLIAPYAKGGKIGLFGGAGVGKTVLIQELIN 201          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_PARDP (ATP synthase subunit beta OS=Paracoccus denitrificans (strain Pd 1222) GN=atpD PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.109e-55
Identity = 111/163 (68.10%), Postives = 128/163 (78.53%), Query Frame = 3
Query:  309 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            A G++ QVIGAVVDV+FD  LP IL ALE  ++  RLVLEVAQH+GE  VRTIAMD TEGLVRG  V +TG PI VPVG  TLGRI+NV+GEP+DE G ++      IH++AP F  QAT  +ILVTGIKV+DLLAPY +GGKIGLFGGAGV KTVLIMELIN
Sbjct:    4 ANGKITQVIGAVVDVQFDGQLPAILNALETENNGKRLVLEVAQHLGENTVRTIAMDATEGLVRGLPVKDTGGPIMVPVGDATLGRILNVVGEPVDEGGPVEATQTRAIHQQAPDFAAQATASEILVTGIKVIDLLAPYSKGGKIGLFGGAGVGKTVLIMELIN 166          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_GEOSL (ATP synthase subunit beta OS=Geobacter sulfurreducens GN=atpD PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.109e-55
Identity = 114/167 (68.26%), Postives = 129/167 (77.25%), Query Frame = 3
Query:  315 GQVCQVIGAVVDVRFDEG-LPPILTALEVV-----DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            G++ QVIGAV+DV F+ G LPPI  AL V      D    LVLEVAQH+GE  VRTIAMD T+GLVRGQ VL+TG  I+VPVGR TLGRI+NVIGEP+DE G +  E    IHREAPAFV+Q+T+ +   TGIKVVDLLAPY RGGKIGLFGGAGV KTVLIMELIN
Sbjct:    6 GKISQVIGAVIDVEFEPGKLPPIYNALRVTNPAIDDKEYNLVLEVAQHLGENAVRTIAMDSTDGLVRGQAVLDTGKQISVPVGRKTLGRILNVIGEPVDEMGPVNAEKEYGIHREAPAFVDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELIN 172          
BLAST of CB293415 vs. ExPASy Swiss-Prot
Match: ATPB_MAGSA (ATP synthase subunit beta OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=atpD PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.543e-54
Identity = 108/162 (66.67%), Postives = 130/162 (80.25%), Query Frame = 3
Query:  312 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVXKTVLIMELIN 797
            +G + QV+GAVVDVRFD  LP IL+AL +     +LVLEVAQH+GE  VRTIAMD T+GL RG  V++TG+ I +PVG  TLGRI+NVIGEPIDE+G +  +  LPIH +AP FV+Q+TE +ILVTGIKV+DLLAPY +GGKIGL GGAGV KTVLIMELIN
Sbjct:    6 VGTITQVLGAVVDVRFDGQLPAILSALHLEHQGKKLVLEVAQHLGESTVRTIAMDSTDGLTRGTEVVDTGAAIQMPVGPETLGRIINVIGEPIDERGPIGNKTTLPIHADAPEFVDQSTETEILVTGIKVIDLLAPYCKGGKIGLCGGAGVGKTVLIMELIN 167          
The following BLAST results are available for this feature:
BLAST of CB293415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_MAGSM3.672e-5668.94ATP synthase subunit beta OS=Magnetococcus sp. (st... [more]
ATPB_BARHE4.796e-5667.88ATP synthase subunit beta OS=Bartonella henselae G... [more]
ATPB_RHILO1.068e-5568.29ATP synthase subunit beta OS=Rhizobium loti GN=atp... [more]
ATPB_SCHPO1.823e-5569.51ATP synthase subunit beta, mitochondrial OS=Schizo... [more]
ATPB_BARQU1.823e-5566.67ATP synthase subunit beta OS=Bartonella quintana G... [more]
ATPB_KLULA2.380e-5568.52ATP synthase subunit beta, mitochondrial OS=Kluyve... [more]
ATPB_SPHAL3.109e-5567.48ATP synthase subunit beta OS=Sphingopyxis alaskens... [more]
ATPB_PARDP3.109e-5568.10ATP synthase subunit beta OS=Paracoccus denitrific... [more]
ATPB_GEOSL3.109e-5568.26ATP synthase subunit beta OS=Geobacter sulfurreduc... [more]
ATPB_MAGSA1.543e-5466.67ATP synthase subunit beta OS=Magnetospirillum magn... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293415 ID=CB293415; Name=CB293415; organism=Citrus sinensis; type=EST; length=797bp
GGGCTGAAGGAATTCGGCCCGTGGACATTCTCTCAACATTGAAGCCCTGA
CCAATGGCTCCACGTAGACTCTTATCATCTCTCCTTCGCTCGTCTGTCCG
CCGATCTCCCTCCAAATCTTCGCTTTCTAACTCATCTGTGTTCTCCCCTG
CCGCCACGCGCCGCGCGTCTCCTTATGGGCACCTCCTCTCGCGCGTCTCA
GAGTACGCGACCTCAGCAGCCGCCACTGCCCCACCGGCACAGACTCCGAA
GTCGGATGTAAAGAAAGGCGGCGGTGGTAAAATCACCGATGAGTTTACTG
GAAAGGGCGCGATCGGTCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGAT
GTCAGATTTGACGAGGGGTTGCCTCCGATTTTGACCGCGCTTGAAGTGGT
AGATCACTCCGTTCGGTTAGTGCTTGAGGTGGCTCAGCACATGGGTGAGG
GTGTTGTTAGGACTATTGCTATGGATGGAACTGAAGGGTTGGTTCGTGGC
CAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACCTGTGGGGAGAGT
TACTCTGGGTCGTATTATGAATGTCATTGGAGAGCCTATTGATGAGAAAG
GCGATCTCAAAACTGAACATTACTTGCCCATCCACAGAGAGGCTCCAGCA
TTCGTTGAGCAGGCAACTGAACAACAGATTCTAGTCACTGGCATCAAGGT
TGTTGATCTCCTTGCTCCATACCAAAGAGGAGGGAAAATTGGGCTTTTTG
GTGGTGCTGGTGTANGAAAAACTGTGCTTATTATGGAACTTATTAAC
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