CB293418

Overview
NameCB293418
Unique NameCB293418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9848 contig Csv1_Contig9848:336..1155. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293418 vs. ExPASy Swiss-Prot
Match: ACCO2_MALDO (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.120e-13
Identity = 56/196 (28.57%), Postives = 102/196 (52.04%), Query Frame = -2
Query:  241 DASPHQRETIEKYAQAIQELALDLAHKLAESMGL-----MDSVFQDWPCQF--RINKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRSGAFVPVDPLPGTLLVNLGDIATQVWSNGRLLNVKHRVQCKESAIRVSIATFLLGPKEAAVEAPAEFVDAEHPRL---YVPITFEDYRKLRLSTNLQAGE 798
            D     R+T++++A  +++LA  L   L E++GL       + +      F  +++ Y   P+     G++ HTD+G + +L  D+ V GL+++ + G ++ V P+  ++++NLGD   +V +NG+  ++ HRV  +    R+SIA+F   P + A  +PA  +  E   +   Y    F+DY KL      QA E
Sbjct:  105 DLEEDYRKTMKEFAVELEKLAEKLLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLL-KDGEWMDVPPVHHSIVINLGD-QIEVITNGKYKSIMHRVIAQSDGTRMSIASF-YNPGDDAFISPAPALLEEKSEVSPTYPKFLFDDYMKLYSGLKFQAKE 297          
BLAST of CB293418 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.951e-13
Identity = 53/175 (30.29%), Postives = 84/175 (48.00%), Query Frame = -2
Query:  280 ETIEKYAQAIQELALDLAHKLAESMGLMD---------SVFQDWPCQFRINKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRSGAFVPVDPLPGTLLVNLGDIATQVWSNGRLLNVKHRVQCKESAIRVSIATFLLGPKEAAVEAPAEFVDAEHPRLYVPITFEDY 777
            E IE+Y + +Q+LA  L      S+G+ +         S FQ      ++N Y   PE   + G+  HTDS  +TIL  + N  GL+V      +V   P+PG+L+VN+GD+   + +NG   +V HR +      R S+A     P +  +    + VD     LY  +T++ Y
Sbjct:  158 EIIEEYEEHMQKLAAKLMWFALGSLGVEEKDIQWAGPNSDFQGTQAVIQLNHYPKCPEPDRAMGLAAHTDSTLMTILYQN-NTAGLQVFRDDVGWVTAPPVPGSLVVNVGDL-LHILTNGIFPSVLHRARVNHVRSRFSMAYLWGPPSDIMISPLPKLVDPLQSPLYPSLTWKQY 330          
BLAST of CB293418 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.951e-13
Identity = 58/188 (30.85%), Postives = 99/188 (52.66%), Query Frame = -2
Query:  235 ETIEKYAQAIQELALDLAHKLAESMGLMDSVFQDWPCQFRI----NKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRSGAFVPVDPLPGTLLVNLGDIATQVWSNGRLLNVKHRVQCKESAIRVSIATFL-LGPKEAA-VEAP-AEFVDAEHPRLYVPITFEDYRKLRLSTNLQAGEAL 777
            E++  +++ +++L   L   L+E +GL  S  +D+   F +    N Y   P+   + G   HTD GF+TIL  D+ +GGL+V+ ++  +V V P PG+L+VN+GD   Q+ SN + L+V+HR        R+SI  F    P +++ +  P  E +  ++P  Y   T +D+     +  L    AL
Sbjct:  174 ESLIDFSKDVKKLGFTLLELLSEGLGLDRSYLKDYMDCFHLFCSCNYYPPCPQPELTMGTIQHTDIGFVTILLQDD-MGGLQVLHQN-HWVDVPPTPGSLVVNIGDF-LQLLSNDKYLSVEHRAISNNVGSRMSITCFFGESPYQSSKLYGPITELLSEDNPPKYRATTVKDHTSYLHNRGLDGTSAL 358          
BLAST of CB293418 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.951e-13
Identity = 57/188 (30.32%), Postives = 96/188 (51.06%), Query Frame = -2
Query:  235 ETIEKYAQAIQELALDLAHKLAESMGLMDSVFQDWPCQFRI----NKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRSGAFVPVDPLPGTLLVNLGDIATQVWSNGRLLNVKHRVQCKESAIRVSIATFLLGPKEA--AVEAP-AEFVDAEHPRLYVPITFEDYRKLRLSTNLQAGEAL 777
            E + +Y++ + +L   L   L+E++GL  +  +D  C   +    + Y   P+   + G+  H+D+ FLTIL  D ++GGL+V+     +V V P+PG L+VN+GD+  Q+ +N + ++V+HRV    +  R+S+A F      A   V  P  E +  E+P  Y   T  +Y K   S        L
Sbjct:  176 EMMIEYSKEVMKLGKLLFELLSEALGLNTNHLKDMDCTNSLLLLGHYYPPCPQPDLTLGLTKHSDNSFLTILLQD-HIGGLQVL-HDQYWVDVPPVPGALVVNVGDL-LQLITNDKFISVEHRVLANVAGPRISVACFFSSYLMANPRVYGPIKEILSEENPPNYRDTTITEYAKFYRSKGFDGTSGL 360          
BLAST of CB293418 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.186e-12
Identity = 63/187 (33.69%), Postives = 89/187 (47.59%), Query Frame = -2
Query:  283 VADFCSHL---DASPHQRETIEKYAQAIQELALDLAHKLAESMGL----MDSVFQDWPCQFRINKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRSGAFVPVDPLPGTLLVNLGDIATQVWSNGRLLNVKHRVQCKESAIRVSIATFLLGPKEAAVEAPAEFVDAEHPRLYVPITFED 822
            VAD+ S     D +P  R   +KY + ++EL+L +   L  S+G+        F D     R N Y   PE   + G   H D   LTIL  D+ VGGLEV+   G + PV P+PG +++N+GD      SNGR  +  HR    +   R S+A FL   ++  V  P     A  P+ Y   T+ D
Sbjct:  170 VADYFSSTLGPDFAPMGR-VYQKYCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQDD-VGGLEVLV-DGEWRPVSPVPGAMVINIGD-TFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPP---SAATPQHYPDFTWAD 349          
BLAST of CB293418 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.186e-12
Identity = 63/187 (33.69%), Postives = 89/187 (47.59%), Query Frame = -2
Query:  283 VADFCSHL---DASPHQRETIEKYAQAIQELALDLAHKLAESMGL----MDSVFQDWPCQFRINKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRSGAFVPVDPLPGTLLVNLGDIATQVWSNGRLLNVKHRVQCKESAIRVSIATFLLGPKEAAVEAPAEFVDAEHPRLYVPITFED 822
            VAD+ S     D +P  R   +KY + ++EL+L +   L  S+G+        F D     R N Y   PE   + G   H D   LTIL  D+ VGGLEV+   G + PV P+PG +++N+GD      SNGR  +  HR    +   R S+A FL   ++  V  P     A  P+ Y   T+ D
Sbjct:  170 VADYFSSTLGPDFAPMGR-VYQKYCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQDD-VGGLEVLV-DGEWRPVSPVPGAMVINIGD-TFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPP---SAATPQHYPDFTWAD 349          
BLAST of CB293418 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.450e-12
Identity = 53/181 (29.28%), Postives = 95/181 (52.49%), Query Frame = -2
Query:  262 RETIEKYAQAIQELALDLAHKLAESMGLMDSVFQDWPCQFRINKYNFAP------ESVGSPGVQLHTDSGFLTILQDDENVGGLE-VMDRSGAFVPVDPLPGTLLVNLGDIATQVWSNGRLLNVKHRVQCKESAIRVSIATFLLGPKEAAVEAPA-EFVDAEHPRLYVPITFEDYRKLRLS 780
            RE + KY+  +++L + +   + E +GL    F +   Q ++   N+ P       ++GS G   H D   +T+LQ D  + GL+ ++ +   ++ V P+P   +VNLG +  +V +N +     HRV    +  RVSIAT L+GP  +    PA E ++ ++P LY P ++ ++  + LS
Sbjct:  155 REVVAKYSVEVRKLTMRMLDYICEGLGLKLGYFDNELSQIQMMLTNYYPPCPDPSSTLGSGG---HYDGNLITLLQQD--LPGLQQLIVKDATWIAVQPIPTAFVVNLG-LTLKVITNEKFEGSIHRVVTDPTRDRVSIAT-LIGPDYSCTIEPAKELLNQDNPPLYKPYSYSEFADIYLS 328          
BLAST of CB293418 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.450e-12
Identity = 58/192 (30.21%), Postives = 97/192 (50.52%), Query Frame = -2
Query:  223 RETIEKYAQAIQELALDLAHKLAESMGL----MDSVFQDWPCQFRINKYNFAPESVGSP--GVQLHTDSGFLTILQDDENVGGLEVMDRSGAFVPVDPLPGTLLVNLGDIATQVWSNGRLLNVKHRVQCKESAIRVSIATFLLGPKEAAVEAPAEFVDAEHPRLYVPITFEDYRKLRLSTNLQAGEALELVR 780
            R  +E Y Q I  +A  +   L + + +     +++F+      R+NKY+  P   GS   G+  HTD+ FLTIL  D+ +GGLE ++ +G ++ V P    L VN+GD+  Q  SNG   +V+HRV    +  R+SIA F+    E  ++         +P+ Y   +F +Y++       + G+ + L R
Sbjct:  153 RTIVETYVQEIARVAQMICEILGKQVNVSSEYFENIFELENSFLRLNKYH--PSVFGSEVFGLVPHTDTSFLTILSQDQ-IGGLE-LENNGQWISVKPCLEALTVNIGDM-FQALSNGVYQSVRHRVISPANIERMSIAFFVCPYLETEIDC------FGYPKKYRRFSFREYKEQSEHDVKETGDKVGLSR 333          
BLAST of CB293418 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.450e-12
Identity = 56/182 (30.77%), Postives = 89/182 (48.90%), Query Frame = -2
Query:  280 PHQRETIEKYAQAIQELALDLAHKLAESMGLMDSVFQ-------DWPCQF--RINKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRSGAFVPVDPLPGTLLVNLGDIATQVWSNGRLLNVKHRVQCKESAIRVSIATFLLGPKEAAVEAPAEFV---DAEHPRLYVPITFEDY 789
            P   ET+++Y + I++LA  +   + E++G      +         P  F  +++ Y   P      G++ HTD+G + +L  D+ VGGL+++ + G ++ V PL   +++N GD   +V SNGR  +  HRV       R SIA+F   P   A  APA      +A  P LY    F DY
Sbjct:  106 PDFEETMKEYREEIRKLAEKMMEVMDENLGFEKGCIKKAFSGDGQHPPFFGTKVSHYPPCPRLDLVKGLRAHTDAGGVILLFQDDQVGGLQML-KDGRWIDVQPLADAIVINTGD-QIEVLSNGRYKSAWHRVLATSHGNRRSIASF-YNPSLKATIAPAAGAATEEAAPPALYPKFLFGDY 284          
BLAST of CB293418 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.450e-12
Identity = 57/198 (28.79%), Postives = 100/198 (50.51%), Query Frame = -2
Query:  241 DASPHQRETIEKYAQAIQELALDLAHKLAESMGL----MDSVFQDWPCQF---RINKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRSGAFVPVDPLPGTLLVNLGDIATQVWSNGRLLNVKHRVQCK-ESAIRVSIATFLLGPKEAAVEAPAEFV----DAEHPRLYVPITFEDYRKLRLSTNLQAGE 798
            D     R  ++ +A  I++L+ +L   L E++GL    +  VF          +++ Y   P      G++ HTD+G + +L  D+ V GL+++ + G +V V P+  +++VNLGD   +V +NG+  +V+HRV  + +   R+SIA+F     ++ +    E +    + E    Y    FEDY KL  +   QA E
Sbjct:  105 DLDDDYRTLMKDFAGKIEKLSEELLDLLCENLGLEKGYLKKVFYGSKRPTFGTKVSNYPPCPNPDLVKGLRAHTDAGGIILLFQDDKVSGLQLL-KDGEWVDVPPVKHSIVVNLGD-QLEVITNGKYKSVEHRVLSQTDGEGRMSIASFYNPGSDSVIFPAPELIGKEAEKEKKENYPRFVFEDYMKLYSAVKFQAKE 300          
The following BLAST results are available for this feature:
BLAST of CB293418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ACCO2_MALDO3.120e-1328.571-aminocyclopropane-1-carboxylate oxidase 2 OS=Mal... [more]
G3OX2_ARATH6.951e-1330.29Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
ACCH3_SOLLC6.951e-1330.851-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH1_ARATH6.951e-1330.321-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GAOX2_ORYSJ1.186e-1233.69Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI1.186e-1233.69Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
HY6H_HYONI3.450e-1229.28Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]
G2OX7_ARATH3.450e-1230.21Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
ACCO_MUSAC3.450e-1230.771-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]
ACCO1_ARATH3.450e-1228.791-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293418 ID=CB293418; Name=CB293418; organism=Citrus sinensis; type=EST; length=823bp
TTTTTTTTTTTTCGATCATCTCTCGTGGGCTTATGATTGCTTTATACCAT
TCTTGAAATATGAAAGCTATTACAGATACCTGAATTCTAGAAATTGAATC
CCATTTAGGCACATTTAATTTGCAGTATGGATAAAGACGGGGAGTTGCGC
ATGAGCTGTGTTATTTAAAATGTCAGTCAGCTATGCAATGTAATTTTCTT
GCTTATTGTTTCAGGAATGGGAACGTACAAGTTCAAGAGCTTCACCCGCC
TGCAAATTCGTGGACAGTCGGAGCTTTCTGTAGTCTTCAAAAGTAATTGG
TACATAAAGACGTGGGTGTTCTGCATCAACAAACTCTGCTGGAGCTTCCA
CTGCTGCCTCCTTTGGTCCCAATAGAAATGTGGCAATCGATACTCTTATT
GCTGATTCCTTGCACTGCACTCTATGCTTCACATTGAGCAACCTTCCGTT
ACTCCATACCTGCGTGGCAATGTCTCCAAGATTGACAAGGAGGGTGCCGG
GCAAGGGATCAACAGGTACAAATGCACCAGATCTGTCCATCACTTCGAGG
CCACCAACATTTTCATCATCTTGAAGAATAGTAAGGAACCCTGAATCTGT
GTGTAATTGCACTCCAGGGGAGCCTACGCTTTCTGGAGCGAAGTTGTACT
TGTTTATCCTAAACTGGCAAGGCCAATCCTGGAACACACTGTCCATCAAC
CCCATACTCTCGGCCAATTTATGCGCCAAATCCAAGGCCAACTCTTGTAT
TGCTTGAGCATATTTCTCTATTGTCTCTCTCTGATGAGGAGAGGCATCCA
GGTGAGAACAAAAGTCAGCAACA
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